Wall clock time and date at job start Wed Apr 1 2020 04:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33319 * 126.11152 * 2 1 4 4 C 1.30854 * 109.68861 * 180.27968 * 3 2 1 5 5 N 1.34498 * 109.16260 * 359.76056 * 4 3 2 6 6 C 1.46504 * 126.47298 * 180.02562 * 5 4 3 7 7 C 1.36671 * 126.10588 * 179.87936 * 2 1 3 8 8 C 1.46764 * 126.84136 * 359.97438 * 7 2 1 9 9 O 1.21688 * 119.99736 * 89.34996 * 8 7 2 10 10 N 1.34768 * 120.00223 * 269.34341 * 8 7 2 11 11 C 1.47558 * 118.64343 * 354.40092 * 10 8 7 12 12 C 1.53938 * 112.18550 * 137.88424 * 11 10 8 13 13 C 1.50881 * 110.18373 * 319.35288 * 12 11 10 14 14 C 1.52632 * 109.39505 * 91.83301 * 13 12 11 15 15 C 1.47104 * 114.23694 * 275.32066 * 14 13 12 16 16 C 1.54240 * 112.30951 * 183.85133 * 15 14 13 17 17 C 1.54411 * 104.91873 * 122.26173 * 16 15 14 18 18 N 1.48173 * 104.54024 * 24.12481 * 17 16 15 19 19 C 1.36941 * 127.88076 * 140.10489 * 18 17 16 20 20 H 1.08005 * 119.99556 * 204.45676 * 19 18 17 21 21 C 1.38808 * 119.99766 * 24.45417 * 19 18 17 22 22 N 1.31615 * 120.00429 * 5.21217 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 185.21549 * 21 19 18 24 24 H 1.48501 * 109.47059 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47319 * 120.00038 * 23 21 19 26 26 H 1.48503 * 109.47168 * 240.00228 * 23 21 19 27 27 C 1.48170 * 104.24157 * 320.10331 * 18 17 16 28 28 C 1.44601 * 118.64438 * 174.41992 * 10 8 7 29 29 H 1.08999 * 109.47316 * 270.12427 * 1 2 3 30 30 H 1.08997 * 109.46995 * 30.12021 * 1 2 3 31 31 H 1.08998 * 109.47322 * 150.11746 * 1 2 3 32 32 H 1.07999 * 125.42264 * 179.74496 * 4 3 2 33 33 H 1.08998 * 109.46990 * 274.96337 * 6 5 4 34 34 H 1.08994 * 109.46917 * 34.96758 * 6 5 4 35 35 H 1.09000 * 109.46738 * 154.96371 * 6 5 4 36 36 H 1.08999 * 108.93754 * 258.58332 * 11 10 8 37 37 H 1.09000 * 108.93596 * 17.19098 * 11 10 8 38 38 H 1.09003 * 109.35204 * 79.56889 * 12 11 10 39 39 H 1.09004 * 109.35030 * 199.13074 * 12 11 10 40 40 H 1.08998 * 109.47808 * 331.85602 * 13 12 11 41 41 H 1.09004 * 109.49471 * 211.81701 * 13 12 11 42 42 H 1.08998 * 108.53070 * 154.09855 * 14 13 12 43 43 H 1.08998 * 108.41426 * 36.46856 * 14 13 12 44 44 H 1.08996 * 110.35049 * 241.12344 * 16 15 14 45 45 H 1.09000 * 110.35106 * 3.39882 * 16 15 14 46 46 H 1.08995 * 110.42267 * 142.89494 * 17 16 15 47 47 H 1.09000 * 110.42269 * 265.36092 * 17 16 15 48 48 H 0.97001 * 120.00441 * 179.97438 * 22 21 19 49 49 H 1.09007 * 110.42066 * 281.05733 * 27 18 17 50 50 H 1.08997 * 110.42370 * 158.59039 * 27 18 17 51 51 H 1.08998 * 109.47129 * 30.58360 * 28 10 8 52 52 H 1.08998 * 109.47260 * 150.59627 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0060 5 7 3.6121 -0.6363 -0.0048 6 6 4.8305 -1.4499 -0.0096 7 6 2.3123 -1.1042 0.0023 8 6 1.8819 -2.5073 0.0058 9 8 1.6917 -3.0880 -1.0466 10 7 1.6975 -3.1527 1.1744 11 6 2.0561 -2.4621 2.4281 12 6 1.0069 -2.6812 3.5331 13 6 -0.3837 -2.6100 2.9520 14 6 -0.8366 -4.0106 2.5481 15 6 -0.3891 -4.4276 1.2103 16 6 -0.9491 -5.8077 0.8094 17 6 -1.7223 -5.5570 -0.5034 18 7 -1.1042 -4.3361 -1.0718 19 6 -0.8151 -4.0729 -2.3842 20 1 -0.0397 -3.3640 -2.6346 21 6 -1.5185 -4.7173 -3.3925 22 7 -2.5307 -5.5026 -3.0906 23 14 -1.0284 -4.4701 -5.1780 24 1 0.1324 -3.5466 -5.2494 25 1 -0.6583 -5.7783 -5.7755 26 1 -2.1700 -3.8883 -5.9287 27 6 -0.8704 -3.4649 0.1037 28 6 1.1568 -4.4936 1.1480 29 1 -0.3634 0.0022 1.0276 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8910 -0.5120 32 1 4.3970 1.3743 -0.0114 33 1 5.1772 -1.5789 -1.0349 34 1 5.6030 -0.9507 0.5752 35 1 4.6176 -2.4255 0.4274 36 1 3.0191 -2.8366 2.7754 37 1 2.1442 -1.3938 2.2308 38 1 1.1591 -3.6606 3.9867 39 1 1.1195 -1.9108 4.2959 40 1 -0.3785 -1.9626 2.0751 41 1 -1.0693 -2.2071 3.6975 42 1 -1.9257 -4.0436 2.5750 43 1 -0.4514 -4.7212 3.2794 44 1 -0.1350 -6.5127 0.6412 45 1 -1.6225 -6.1821 1.5804 46 1 -1.5980 -6.3987 -1.1847 47 1 -2.7788 -5.3872 -0.2961 48 1 -3.0224 -5.9526 -3.7953 49 1 -1.7963 -2.9737 0.4032 50 1 -0.1010 -2.7253 -0.1180 51 1 1.4625 -4.9905 0.2272 52 1 1.5315 -5.0534 2.0048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045946332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:29 Heat of formation + Delta-G solvation = 48.825513 kcal Electronic energy + Delta-G solvation = -34204.797946 eV Core-core repulsion = 30205.787061 eV Total energy + Delta-G solvation = -3999.010885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.31965 -41.70999 -39.24720 -37.52836 -35.43172 -35.03671 -34.24677 -32.61942 -32.08063 -30.42830 -29.54100 -27.83621 -27.63738 -26.94966 -26.30226 -24.70324 -23.30995 -22.20052 -21.66450 -21.49812 -20.09219 -19.38311 -18.86920 -18.56283 -17.49932 -16.96717 -16.84498 -16.70065 -16.44778 -15.96615 -15.70248 -15.36778 -15.27323 -14.88351 -14.60650 -14.46599 -14.25473 -14.08265 -13.95687 -13.83062 -13.50980 -13.37895 -13.32523 -13.24734 -13.12476 -12.96763 -12.84437 -12.67445 -12.58042 -12.11064 -11.94165 -11.78450 -11.67998 -11.59852 -11.41517 -11.24162 -11.10115 -11.06281 -10.79414 -10.61525 -10.54213 -9.55450 -9.35765 -8.63932 -7.85687 -5.19847 0.73359 1.26096 1.37050 1.37745 1.50344 1.76372 2.00156 2.28362 2.50367 3.34208 3.40670 3.61362 3.65342 3.83546 3.87530 3.87675 4.02419 4.06389 4.14233 4.16278 4.27688 4.33441 4.36565 4.46290 4.54199 4.60624 4.63847 4.65719 4.66424 4.75311 4.79518 4.83005 4.91030 4.94974 5.01518 5.10921 5.14632 5.18608 5.22437 5.28824 5.33333 5.39664 5.47956 5.51943 5.56280 5.61218 5.69132 5.73129 5.81329 6.19605 6.32233 6.34132 6.97266 7.11394 7.22779 7.80574 8.62898 9.29732 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010174 B = 0.005429 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.419856 B = 5156.578434 C = 6753.124176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.038 3.962 3 N -0.524 5.524 4 C 0.212 3.788 5 N -0.439 5.439 6 C 0.066 3.934 7 C -0.082 4.082 8 C 0.580 3.420 9 O -0.539 6.539 10 N -0.585 5.585 11 C 0.108 3.892 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.094 4.094 15 C -0.077 4.077 16 C -0.118 4.118 17 C 0.162 3.838 18 N -0.602 5.602 19 C -0.195 4.195 20 H 0.062 0.938 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.962 3.038 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.130 3.870 28 C 0.139 3.861 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.032 0.968 47 H -0.007 1.007 48 H 0.245 0.755 49 H -0.009 1.009 50 H 0.065 0.935 51 H 0.050 0.950 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.685 8.285 19.937 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 N -0.243 5.243 4 C -0.070 4.070 5 N -0.122 5.122 6 C -0.075 4.075 7 C -0.199 4.199 8 C 0.366 3.634 9 O -0.415 6.415 10 N -0.317 5.317 11 C -0.014 4.014 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.132 4.132 15 C -0.079 4.079 16 C -0.157 4.157 17 C 0.037 3.963 18 N -0.325 5.325 19 C -0.325 4.325 20 H 0.080 0.920 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.791 3.209 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.216 1.216 27 C 0.005 3.995 28 C 0.016 3.984 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.273 0.727 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.051 0.949 47 H 0.011 0.989 48 H 0.054 0.946 49 H 0.009 0.991 50 H 0.083 0.917 51 H 0.068 0.932 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.444 8.593 19.167 26.676 hybrid contribution -0.258 -0.943 -1.939 2.171 sum 16.187 7.650 17.228 24.846 Atomic orbital electron populations 1.20144 0.87890 1.02107 1.02919 1.20839 0.96387 0.87562 1.04671 1.69968 1.01802 1.30223 1.22313 1.25848 0.97371 0.81845 1.01889 1.45496 1.05609 1.08207 1.52920 1.22416 0.83961 0.96082 1.05021 1.20603 0.86312 0.94294 1.18680 1.17282 0.77565 0.84174 0.84392 1.91071 1.50617 1.67087 1.32704 1.47704 1.62483 1.15449 1.06046 1.22171 0.99096 0.97033 0.83060 1.21735 0.92881 1.04421 0.96726 1.21090 0.97597 0.96321 1.00507 1.20382 1.00537 0.97845 0.94403 1.21007 0.95654 0.95516 0.95770 1.22646 0.99680 0.96020 0.97356 1.21276 0.92895 0.89951 0.92224 1.44938 1.71181 1.14568 1.01824 1.19180 1.10754 1.20945 0.81635 0.92012 1.25686 0.97243 1.01903 1.01229 1.70084 1.22813 1.35587 1.31419 0.85245 0.77098 0.77105 0.81431 1.20515 1.21530 1.21570 1.22127 0.96188 0.93865 0.87325 1.21555 0.92087 0.82405 1.02318 0.89486 0.90631 0.93745 0.72657 0.90112 0.84477 0.90422 0.89589 0.90960 0.89614 0.88472 0.93873 0.90249 0.93282 0.89509 0.91892 0.89948 0.94937 0.98892 0.94627 0.99130 0.91727 0.93187 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.40 10.15 71.23 0.72 -1.68 16 2 C 0.04 1.21 7.01 41.96 0.29 1.50 16 3 N -0.52 -14.93 11.20 -187.59 -2.10 -17.03 16 4 C 0.21 4.18 12.52 180.33 2.26 6.44 16 5 N -0.44 -9.45 3.17 -539.81 -1.71 -11.16 16 6 C 0.07 0.84 11.07 127.77 1.41 2.25 16 7 C -0.08 -2.50 4.50 40.01 0.18 -2.32 16 8 C 0.58 20.38 4.40 86.47 0.38 20.76 16 9 O -0.54 -25.61 13.17 -4.31 -0.06 -25.67 16 10 N -0.58 -16.01 2.00 -822.89 -1.65 -17.65 16 11 C 0.11 1.92 6.02 86.49 0.52 2.44 16 12 C -0.12 -1.70 5.70 30.22 0.17 -1.53 16 13 C -0.12 -2.43 5.45 29.78 0.16 -2.27 16 14 C -0.09 -2.31 3.83 28.64 0.11 -2.20 16 15 C -0.08 -2.57 0.67 -52.50 -0.04 -2.60 16 16 C -0.12 -4.39 6.24 31.49 0.20 -4.20 16 17 C 0.16 8.45 5.76 86.54 0.50 8.95 16 18 N -0.60 -33.62 3.34 -688.01 -2.30 -35.92 16 19 C -0.19 -12.21 9.74 84.03 0.82 -11.39 16 20 H 0.06 4.05 6.55 -2.91 -0.02 4.03 16 21 C -0.07 -4.27 5.41 84.86 0.46 -3.81 16 22 N -0.95 -61.62 11.24 21.65 0.24 -61.37 16 23 Si 0.96 51.32 29.56 68.60 2.03 53.35 16 24 H -0.28 -14.81 7.11 99.48 0.71 -14.11 16 25 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 26 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 27 C 0.13 5.86 4.31 86.52 0.37 6.23 16 28 C 0.14 4.20 4.23 87.37 0.37 4.57 16 29 H 0.09 2.45 7.49 -2.39 -0.02 2.43 16 30 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.78 6.04 -2.39 -0.01 1.76 16 32 H 0.26 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 1.13 7.79 -2.39 -0.02 1.11 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.43 6.12 -2.39 -0.01 1.42 16 38 H 0.09 0.97 7.32 -2.39 -0.02 0.95 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.04 1.15 5.77 -2.39 -0.01 1.14 16 41 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.62 7.38 -2.39 -0.02 1.60 16 44 H 0.06 2.25 7.53 -2.39 -0.02 2.24 16 45 H 0.08 2.58 7.79 -2.39 -0.02 2.57 16 46 H 0.03 1.90 7.03 -2.39 -0.02 1.88 16 47 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 48 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 49 H -0.01 -0.43 7.96 -2.38 -0.02 -0.45 16 50 H 0.06 2.90 1.87 -2.39 0.00 2.90 16 51 H 0.05 1.97 7.02 -2.39 -0.02 1.95 16 52 H 0.11 2.33 8.08 -2.39 -0.02 2.31 16 Total: -1.00 -88.75 385.26 4.28 -84.48 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.92 Total: 9.82 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 8.90 Total: 21.16 kcal Atomic # 7 Polarization: -135.62 SS G_CDS: -7.51 Total: -143.13 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.03 Total: 53.35 kcal Total: -88.75 4.28 -84.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045946332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.303 kcal (2) G-P(sol) polarization free energy of solvation -88.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds