Wall clock time and date at job start Wed Apr 1 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34669 * 126.59462 * 2 1 4 4 N 1.34130 * 108.01998 * 180.28236 * 3 2 1 5 5 C 1.30502 * 109.25737 * 359.73508 * 4 3 2 6 6 N 1.35040 * 108.69774 * 0.02562 * 5 4 3 7 7 C 1.46506 * 126.39407 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46941 * 265.01788 * 7 6 5 9 9 O 1.21280 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99885 * 180.02562 * 8 7 6 11 11 C 1.44568 * 118.75865 * 0.02562 * 10 8 7 12 12 C 1.54705 * 109.58752 * 270.60673 * 11 10 8 13 13 C 1.47039 * 110.64034 * 288.21325 * 12 11 10 14 14 C 1.53004 * 114.34591 * 62.93840 * 13 12 11 15 15 C 1.50564 * 109.11967 * 276.07723 * 14 13 12 16 16 C 1.53991 * 111.44094 * 214.06662 * 15 14 13 17 17 C 1.54137 * 104.90868 * 98.65843 * 16 15 14 18 18 N 1.47536 * 107.06946 * 358.27030 * 17 16 15 19 19 C 1.36942 * 126.97212 * 205.18826 * 18 17 16 20 20 H 1.08001 * 120.00003 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00048 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99991 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47374 * 60.00060 * 23 21 19 25 25 H 1.48500 * 109.47290 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47252 * 299.99770 * 23 21 19 27 27 C 1.48219 * 106.05090 * 25.20440 * 18 17 16 28 28 C 1.47612 * 118.76093 * 180.02562 * 10 8 7 29 29 H 1.08999 * 109.46831 * 270.16129 * 1 2 3 30 30 H 1.08998 * 109.46771 * 30.16006 * 1 2 3 31 31 H 1.08995 * 109.46981 * 150.16203 * 1 2 3 32 32 H 1.07997 * 125.99208 * 0.05469 * 3 2 1 33 33 H 1.07995 * 125.64767 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46894 * 145.02042 * 7 6 5 35 35 H 1.08994 * 109.47105 * 25.02477 * 7 6 5 36 36 H 1.08999 * 109.45659 * 150.56540 * 11 10 8 37 37 H 1.09003 * 109.44991 * 30.63808 * 11 10 8 38 38 H 1.08996 * 109.24687 * 167.91483 * 12 11 10 39 39 H 1.08996 * 109.24505 * 48.50757 * 12 11 10 40 40 H 1.09004 * 108.50744 * 301.68357 * 13 12 11 41 41 H 1.09002 * 108.51077 * 184.20209 * 13 12 11 42 42 H 1.08998 * 109.53200 * 156.17890 * 14 13 12 43 43 H 1.09008 * 109.52701 * 35.96486 * 14 13 12 44 44 H 1.09001 * 110.35472 * 339.79715 * 16 15 14 45 45 H 1.09000 * 110.35304 * 217.52180 * 16 15 14 46 46 H 1.09000 * 109.91500 * 117.62319 * 17 16 15 47 47 H 1.09001 * 109.91363 * 238.90842 * 17 16 15 48 48 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 49 49 H 1.09002 * 110.65853 * 79.98233 * 27 18 17 50 50 H 1.08999 * 110.65732 * 202.93027 * 27 18 17 51 51 H 1.08998 * 108.97518 * 17.39505 * 28 10 8 52 52 H 1.09003 * 108.97680 * 258.67967 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5813 0.6540 -0.0063 5 6 3.5968 -0.6509 -0.0045 6 7 2.3230 -1.0991 0.0025 7 6 1.8943 -2.5000 0.0072 8 6 1.6225 -2.9468 -1.4061 9 8 1.7726 -2.1717 -2.3267 10 7 1.2127 -4.2080 -1.6471 11 6 1.0421 -5.1094 -0.5298 12 6 2.3729 -5.8473 -0.2509 13 6 2.6487 -6.8348 -1.3049 14 6 2.8431 -6.2328 -2.6980 15 6 1.4961 -6.0247 -3.3377 16 6 1.5555 -6.2474 -4.8602 17 6 1.0386 -7.6841 -5.0713 18 7 0.7509 -8.2414 -3.7359 19 6 0.7383 -9.5639 -3.3807 20 1 0.5111 -9.8477 -2.3637 21 6 1.0176 -10.5397 -4.3276 22 7 1.2950 -10.1938 -5.5669 23 14 0.9998 -12.3436 -3.8432 24 1 -0.3490 -12.7078 -3.3400 25 1 1.3287 -13.1774 -5.0271 26 1 2.0063 -12.5798 -2.7771 27 6 0.4778 -7.0796 -2.8571 28 6 0.9550 -4.6167 -3.0419 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 1.9867 2.1117 0.0008 33 1 4.4819 -1.2698 -0.0080 34 1 0.9857 -2.5999 0.6009 35 1 2.6805 -3.1191 0.4392 36 1 0.2659 -5.8373 -0.7658 37 1 0.7501 -4.5414 0.3535 38 1 2.3065 -6.3570 0.7103 39 1 3.1857 -5.1219 -0.2168 40 1 1.8178 -7.5391 -1.3452 41 1 3.5509 -7.3845 -1.0365 42 1 3.4358 -6.9131 -3.3095 43 1 3.3577 -5.2756 -2.6127 44 1 2.5816 -6.1575 -5.2168 45 1 0.9112 -5.5334 -5.3732 46 1 0.1281 -7.6668 -5.6704 47 1 1.8014 -8.2840 -5.5677 48 1 1.4898 -10.8757 -6.2287 49 1 -0.5421 -6.7218 -2.9984 50 1 0.6521 -7.3381 -1.8127 51 1 1.4334 -3.9045 -3.7141 52 1 -0.1200 -4.6048 -3.2219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045951668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:37 Heat of formation + Delta-G solvation = 78.358701 kcal Electronic energy + Delta-G solvation = -32320.962587 eV Core-core repulsion = 28323.232358 eV Total energy + Delta-G solvation = -3997.730230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.31659 -40.76590 -38.76392 -36.21729 -34.28754 -33.69026 -33.12808 -32.11431 -30.73975 -28.99101 -28.34512 -26.99111 -26.58525 -25.57333 -25.04975 -23.17887 -21.85900 -21.50995 -20.45033 -19.94776 -19.14553 -18.19578 -17.66736 -17.27470 -17.00740 -16.18494 -15.90435 -15.41087 -14.94246 -14.75504 -14.48218 -14.33108 -14.00950 -13.82614 -13.68195 -13.35700 -13.24094 -13.18787 -13.07488 -12.89583 -12.79107 -12.58835 -12.38864 -12.04519 -11.86858 -11.83176 -11.49647 -11.14238 -10.91248 -10.87968 -10.57194 -10.49806 -10.22124 -10.19570 -10.07635 -9.93158 -9.77243 -9.63781 -9.49831 -9.35469 -8.73043 -8.70673 -8.40646 -6.92417 -5.71321 -3.12430 1.79032 2.29045 2.41774 2.94169 3.09810 3.34492 3.39014 3.40904 4.10374 4.26595 4.42377 4.48686 4.55322 4.59866 4.70325 4.80618 4.84650 4.93953 5.06927 5.15861 5.25893 5.27658 5.33099 5.44047 5.46059 5.55381 5.59061 5.61322 5.63312 5.71794 5.81829 5.90085 5.96596 6.04799 6.14229 6.18624 6.20020 6.30490 6.32328 6.41210 6.57440 6.61746 6.62435 6.79368 6.86870 6.90945 6.97452 7.20869 7.45636 7.51826 7.79133 7.90794 7.95891 8.29436 9.13277 9.74955 10.44989 11.33319 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.002548 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.198930 B =10987.551889 C =11261.989384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.014 4.014 3 C -0.031 4.031 4 N -0.492 5.492 5 C 0.189 3.811 6 N -0.442 5.442 7 C 0.085 3.915 8 C 0.491 3.509 9 O -0.524 6.524 10 N -0.591 5.591 11 C 0.096 3.904 12 C -0.130 4.130 13 C -0.146 4.146 14 C -0.081 4.081 15 C -0.082 4.082 16 C -0.130 4.130 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.122 3.878 28 C 0.127 3.873 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.167 0.833 33 H 0.202 0.798 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.009 0.991 47 H 0.104 0.896 48 H 0.253 0.747 49 H 0.017 0.983 50 H 0.070 0.930 51 H 0.086 0.914 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 14.662 13.817 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C -0.178 4.178 4 N -0.209 5.209 5 C -0.093 4.093 6 N -0.125 5.125 7 C -0.042 4.042 8 C 0.276 3.724 9 O -0.400 6.400 10 N -0.323 5.323 11 C -0.028 4.028 12 C -0.168 4.168 13 C -0.182 4.182 14 C -0.118 4.118 15 C -0.085 4.085 16 C -0.169 4.169 17 C 0.022 3.978 18 N -0.320 5.320 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.004 4.004 28 C 0.005 3.995 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.184 0.816 33 H 0.219 0.781 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.122 0.878 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.088 0.912 51 H 0.104 0.896 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.155 15.172 13.202 20.112 hybrid contribution -0.709 -1.682 0.089 1.828 sum -0.554 13.490 13.290 18.945 Atomic orbital electron populations 1.20202 0.87436 1.03559 1.02263 1.21205 0.94491 0.86723 1.10419 1.21989 0.88430 0.98299 1.09093 1.70256 1.22438 1.08742 1.19510 1.24855 0.86940 0.91834 1.05657 1.44915 1.07457 1.05340 1.54807 1.21807 1.04347 0.81318 0.96718 1.20689 0.78078 0.82777 0.90873 1.90776 1.51180 1.52783 1.45250 1.47710 1.65845 1.10375 1.08373 1.21841 0.99038 0.93757 0.88117 1.21249 0.96787 0.99047 0.99758 1.20847 1.03855 0.99200 0.94312 1.20815 0.95845 0.99641 0.95531 1.21452 0.96928 0.92950 0.97133 1.22729 1.00730 1.00377 0.93049 1.21683 0.99470 0.88934 0.87717 1.44756 1.81115 1.00490 1.05643 1.18957 1.40593 0.80369 0.94978 0.90581 1.24773 1.02176 0.97996 0.95608 1.69767 1.53789 1.31412 1.01841 0.86202 0.77760 0.84701 0.77105 1.21268 1.21611 1.21201 1.22374 0.94094 0.88220 0.95734 1.22106 1.00357 0.96771 0.80255 0.91045 0.89902 0.91950 0.81557 0.78141 0.86417 0.85783 0.88851 0.90901 0.90830 0.92633 0.88462 0.92702 0.91242 0.93401 0.92257 0.92913 0.97301 0.87818 0.93658 0.96530 0.91245 0.89584 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.08 36.01 0.36 -0.25 16 2 C -0.01 -0.16 6.95 -81.60 -0.57 -0.73 16 3 C -0.03 -0.38 11.79 -17.81 -0.21 -0.59 16 4 N -0.49 -6.77 11.25 -14.67 -0.17 -6.93 16 5 C 0.19 2.19 12.56 -90.38 -1.13 1.06 16 6 N -0.44 -4.72 2.24 -115.27 -0.26 -4.98 16 7 C 0.08 0.69 4.77 -5.19 -0.02 0.66 16 8 C 0.49 5.78 7.70 -10.99 -0.08 5.70 16 9 O -0.52 -8.55 15.72 5.56 0.09 -8.46 16 10 N -0.59 -6.63 2.29 -172.79 -0.40 -7.03 16 11 C 0.10 0.84 5.10 -4.18 -0.02 0.82 16 12 C -0.13 -1.19 5.60 -28.69 -0.16 -1.35 16 13 C -0.15 -1.92 5.01 -29.59 -0.15 -2.06 16 14 C -0.08 -1.23 4.89 -27.95 -0.14 -1.37 16 15 C -0.08 -1.30 0.56 -154.16 -0.09 -1.39 16 16 C -0.13 -2.35 5.91 -25.62 -0.15 -2.50 16 17 C 0.15 3.41 6.01 -2.88 -0.02 3.39 16 18 N -0.60 -13.95 3.36 -169.51 -0.57 -14.52 16 19 C -0.22 -5.72 10.37 -15.06 -0.16 -5.87 16 20 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.00 10.21 55.49 0.57 -25.44 16 23 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.12 2.19 4.54 -2.42 -0.01 2.18 16 28 C 0.13 1.76 4.80 -3.06 -0.01 1.74 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 32 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 0.66 7.19 -51.93 -0.37 0.29 16 35 H 0.12 0.70 7.11 -51.93 -0.37 0.33 16 36 H 0.09 0.91 5.81 -51.93 -0.30 0.61 16 37 H 0.07 0.40 6.26 -51.93 -0.33 0.08 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.48 7.30 -51.93 -0.38 0.10 16 40 H 0.10 1.50 4.44 -51.93 -0.23 1.27 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 43 H 0.05 0.70 7.58 -51.92 -0.39 0.31 16 44 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 45 H 0.05 0.88 7.77 -51.93 -0.40 0.48 16 46 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.10 2.74 5.87 -51.93 -0.30 2.43 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 49 H 0.02 0.31 7.65 -51.93 -0.40 -0.08 16 50 H 0.07 1.15 3.49 -51.93 -0.18 0.97 16 51 H 0.09 1.33 6.87 -51.93 -0.36 0.97 16 52 H 0.06 0.90 7.63 -51.93 -0.40 0.50 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -33.46 389.36 -10.68 -44.14 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.13 Total: 2.06 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.66 Total: -0.90 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.82 Total: -58.90 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.46 -10.68 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045951668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.497 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds