Wall clock time and date at job start Wed Apr 1 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34669 * 126.59462 * 2 1 4 4 N 1.34130 * 108.01998 * 180.28236 * 3 2 1 5 5 C 1.30502 * 109.25737 * 359.73508 * 4 3 2 6 6 N 1.35040 * 108.69774 * 0.02562 * 5 4 3 7 7 C 1.46506 * 126.39407 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46941 * 265.01788 * 7 6 5 9 9 O 1.21280 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99885 * 180.02562 * 8 7 6 11 11 C 1.44568 * 118.75865 * 0.02562 * 10 8 7 12 12 C 1.54705 * 109.58752 * 270.60673 * 11 10 8 13 13 C 1.47039 * 110.64034 * 288.21325 * 12 11 10 14 14 C 1.53004 * 114.34591 * 62.93840 * 13 12 11 15 15 C 1.50564 * 109.11967 * 276.07723 * 14 13 12 16 16 C 1.53991 * 111.44094 * 214.06662 * 15 14 13 17 17 C 1.54137 * 104.90868 * 98.65843 * 16 15 14 18 18 N 1.47536 * 107.06946 * 358.27030 * 17 16 15 19 19 C 1.36942 * 126.97212 * 205.18826 * 18 17 16 20 20 H 1.08001 * 120.00003 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00048 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99991 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47374 * 60.00060 * 23 21 19 25 25 H 1.48500 * 109.47290 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47252 * 299.99770 * 23 21 19 27 27 C 1.48219 * 106.05090 * 25.20440 * 18 17 16 28 28 C 1.47612 * 118.76093 * 180.02562 * 10 8 7 29 29 H 1.08999 * 109.46831 * 270.16129 * 1 2 3 30 30 H 1.08998 * 109.46771 * 30.16006 * 1 2 3 31 31 H 1.08995 * 109.46981 * 150.16203 * 1 2 3 32 32 H 1.07997 * 125.99208 * 0.05469 * 3 2 1 33 33 H 1.07995 * 125.64767 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46894 * 145.02042 * 7 6 5 35 35 H 1.08994 * 109.47105 * 25.02477 * 7 6 5 36 36 H 1.08999 * 109.45659 * 150.56540 * 11 10 8 37 37 H 1.09003 * 109.44991 * 30.63808 * 11 10 8 38 38 H 1.08996 * 109.24687 * 167.91483 * 12 11 10 39 39 H 1.08996 * 109.24505 * 48.50757 * 12 11 10 40 40 H 1.09004 * 108.50744 * 301.68357 * 13 12 11 41 41 H 1.09002 * 108.51077 * 184.20209 * 13 12 11 42 42 H 1.08998 * 109.53200 * 156.17890 * 14 13 12 43 43 H 1.09008 * 109.52701 * 35.96486 * 14 13 12 44 44 H 1.09001 * 110.35472 * 339.79715 * 16 15 14 45 45 H 1.09000 * 110.35304 * 217.52180 * 16 15 14 46 46 H 1.09000 * 109.91500 * 117.62319 * 17 16 15 47 47 H 1.09001 * 109.91363 * 238.90842 * 17 16 15 48 48 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 49 49 H 1.09002 * 110.65853 * 79.98233 * 27 18 17 50 50 H 1.08999 * 110.65732 * 202.93027 * 27 18 17 51 51 H 1.08998 * 108.97518 * 17.39505 * 28 10 8 52 52 H 1.09003 * 108.97680 * 258.67967 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5813 0.6540 -0.0063 5 6 3.5968 -0.6509 -0.0045 6 7 2.3230 -1.0991 0.0025 7 6 1.8943 -2.5000 0.0072 8 6 1.6225 -2.9468 -1.4061 9 8 1.7726 -2.1717 -2.3267 10 7 1.2127 -4.2080 -1.6471 11 6 1.0421 -5.1094 -0.5298 12 6 2.3729 -5.8473 -0.2509 13 6 2.6487 -6.8348 -1.3049 14 6 2.8431 -6.2328 -2.6980 15 6 1.4961 -6.0247 -3.3377 16 6 1.5555 -6.2474 -4.8602 17 6 1.0386 -7.6841 -5.0713 18 7 0.7509 -8.2414 -3.7359 19 6 0.7383 -9.5639 -3.3807 20 1 0.5111 -9.8477 -2.3637 21 6 1.0176 -10.5397 -4.3276 22 7 1.2950 -10.1938 -5.5669 23 14 0.9998 -12.3436 -3.8432 24 1 -0.3490 -12.7078 -3.3400 25 1 1.3287 -13.1774 -5.0271 26 1 2.0063 -12.5798 -2.7771 27 6 0.4778 -7.0796 -2.8571 28 6 0.9550 -4.6167 -3.0419 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 1.9867 2.1117 0.0008 33 1 4.4819 -1.2698 -0.0080 34 1 0.9857 -2.5999 0.6009 35 1 2.6805 -3.1191 0.4392 36 1 0.2659 -5.8373 -0.7658 37 1 0.7501 -4.5414 0.3535 38 1 2.3065 -6.3570 0.7103 39 1 3.1857 -5.1219 -0.2168 40 1 1.8178 -7.5391 -1.3452 41 1 3.5509 -7.3845 -1.0365 42 1 3.4358 -6.9131 -3.3095 43 1 3.3577 -5.2756 -2.6127 44 1 2.5816 -6.1575 -5.2168 45 1 0.9112 -5.5334 -5.3732 46 1 0.1281 -7.6668 -5.6704 47 1 1.8014 -8.2840 -5.5677 48 1 1.4898 -10.8757 -6.2287 49 1 -0.5421 -6.7218 -2.9984 50 1 0.6521 -7.3381 -1.8127 51 1 1.4334 -3.9045 -3.7141 52 1 -0.1200 -4.6048 -3.2219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045951668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:36 Heat of formation + Delta-G solvation = 59.836445 kcal Electronic energy + Delta-G solvation = -32321.765773 eV Core-core repulsion = 28323.232358 eV Total energy + Delta-G solvation = -3998.533415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.10060 -41.82945 -39.96758 -37.44763 -35.24895 -34.84434 -34.50486 -32.82814 -32.39912 -30.52838 -29.21788 -28.25882 -27.29220 -27.02912 -26.20301 -24.57193 -23.03240 -22.36820 -21.70664 -21.14525 -19.97322 -19.47081 -18.84931 -18.37824 -18.19868 -17.27354 -16.87627 -16.70198 -16.34115 -15.95294 -15.51545 -15.38279 -15.10638 -15.01299 -14.65962 -14.60769 -14.47915 -14.08910 -13.91026 -13.82996 -13.58239 -13.57246 -13.35328 -13.23967 -13.19282 -13.04086 -12.90012 -12.68023 -12.54846 -12.18793 -12.05593 -11.96609 -11.75159 -11.48158 -11.37572 -11.25683 -11.14665 -10.91227 -10.70809 -10.62217 -10.37274 -9.67016 -9.19576 -8.87285 -7.73995 -5.16168 0.99407 1.44613 1.47953 1.50313 1.56352 1.69622 2.10815 2.25149 2.51868 3.33934 3.37279 3.55063 3.71445 3.76380 3.81391 3.88409 3.90453 3.93860 4.03604 4.07480 4.15620 4.27907 4.29138 4.38963 4.53931 4.55472 4.57269 4.64981 4.68284 4.76546 4.81021 4.84917 4.87671 4.91996 4.94314 5.01213 5.05460 5.16928 5.24052 5.27457 5.40160 5.41408 5.44350 5.52346 5.61028 5.64721 5.73120 5.83101 5.85044 6.20133 6.32277 6.39286 7.04292 7.10969 7.14711 7.80002 8.50671 9.29660 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.002548 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.198930 B =10987.551889 C =11261.989384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.062 4.062 4 N -0.532 5.532 5 C 0.179 3.821 6 N -0.443 5.443 7 C 0.088 3.912 8 C 0.492 3.508 9 O -0.576 6.576 10 N -0.586 5.586 11 C 0.090 3.910 12 C -0.126 4.126 13 C -0.137 4.137 14 C -0.077 4.077 15 C -0.067 4.067 16 C -0.123 4.123 17 C 0.152 3.848 18 N -0.615 5.615 19 C -0.221 4.221 20 H 0.089 0.911 21 C -0.073 4.073 22 N -0.954 5.954 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.302 1.302 26 H -0.275 1.275 27 C 0.123 3.877 28 C 0.138 3.862 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.177 0.823 33 H 0.226 0.774 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.066 0.934 46 H -0.021 1.021 47 H 0.066 0.934 48 H 0.243 0.757 49 H 0.019 0.981 50 H 0.094 0.906 51 H 0.070 0.930 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 15.232 17.734 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C -0.208 4.208 4 N -0.250 5.250 5 C -0.103 4.103 6 N -0.127 5.127 7 C -0.038 4.038 8 C 0.279 3.721 9 O -0.455 6.455 10 N -0.317 5.317 11 C -0.032 4.032 12 C -0.165 4.165 13 C -0.174 4.174 14 C -0.115 4.115 15 C -0.070 4.070 16 C -0.162 4.162 17 C 0.027 3.973 18 N -0.339 5.339 19 C -0.350 4.350 20 H 0.107 0.893 21 C -0.265 4.265 22 N -0.604 5.604 23 Si 0.804 3.196 24 H -0.205 1.205 25 H -0.229 1.229 26 H -0.201 1.201 27 C -0.002 4.002 28 C 0.015 3.985 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.194 0.806 33 H 0.242 0.758 34 H 0.171 0.829 35 H 0.176 0.824 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.085 0.915 46 H -0.003 1.003 47 H 0.085 0.915 48 H 0.053 0.947 49 H 0.036 0.964 50 H 0.111 0.889 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.523 15.748 17.183 23.314 hybrid contribution -0.515 -1.838 -1.157 2.232 sum -1.038 13.910 16.027 21.247 Atomic orbital electron populations 1.20286 0.85347 1.03644 1.03835 1.21674 0.95813 0.86608 1.08971 1.22341 0.88489 0.99522 1.10419 1.70198 1.23594 1.10313 1.20944 1.25373 0.88195 0.91678 1.05049 1.45064 1.07070 1.06287 1.54241 1.22104 1.07179 0.80228 0.94242 1.21323 0.76684 0.82046 0.92007 1.90771 1.53349 1.54130 1.47251 1.47703 1.65455 1.10899 1.07690 1.22121 0.98583 0.93873 0.88652 1.21239 0.97455 0.98487 0.99274 1.20775 1.02701 0.99847 0.94098 1.20755 0.94789 0.99312 0.96600 1.21262 0.96892 0.93836 0.94971 1.22595 1.00646 0.97369 0.95572 1.21420 0.97013 0.91307 0.87605 1.45009 1.81101 1.01248 1.06563 1.19405 1.38600 0.81618 0.95344 0.89287 1.25593 1.03160 1.01980 0.95762 1.70039 1.55719 1.31866 1.02804 0.85195 0.78069 0.79964 0.76393 1.20454 1.22872 1.20076 1.22593 0.94522 0.86774 0.96264 1.21725 1.00019 0.94456 0.82308 0.88596 0.89462 0.92214 0.80623 0.75768 0.82868 0.82389 0.89675 0.86114 0.87833 0.91128 0.90740 0.93091 0.94801 0.92511 0.92304 0.91516 1.00334 0.91546 0.94730 0.96352 0.88895 0.91154 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.08 71.24 0.72 -0.22 16 2 C -0.02 -0.32 6.95 40.95 0.28 -0.03 16 3 C -0.06 -1.44 11.79 83.52 0.98 -0.46 16 4 N -0.53 -14.22 11.25 -200.32 -2.25 -16.48 16 5 C 0.18 3.78 12.56 180.26 2.26 6.04 16 6 N -0.44 -8.06 2.24 -518.61 -1.16 -9.23 16 7 C 0.09 0.97 4.77 85.63 0.41 1.38 16 8 C 0.49 9.86 7.70 87.66 0.67 10.53 16 9 O -0.58 -17.79 15.72 -3.03 -0.05 -17.84 16 10 N -0.59 -11.05 2.29 -818.97 -1.88 -12.93 16 11 C 0.09 1.10 5.10 87.32 0.45 1.54 16 12 C -0.13 -1.67 5.60 29.32 0.16 -1.50 16 13 C -0.14 -3.26 5.01 28.74 0.14 -3.12 16 14 C -0.08 -2.27 4.89 29.81 0.15 -2.12 16 15 C -0.07 -2.09 0.56 -51.96 -0.03 -2.12 16 16 C -0.12 -4.58 5.91 31.31 0.18 -4.39 16 17 C 0.15 7.42 6.01 86.57 0.52 7.94 16 18 N -0.61 -29.31 3.36 -690.21 -2.32 -31.63 16 19 C -0.22 -11.51 10.37 84.03 0.87 -10.64 16 20 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 22 N -0.95 -56.48 10.21 21.65 0.22 -56.26 16 23 Si 0.97 44.25 29.55 68.60 2.03 46.27 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.12 4.30 4.54 86.49 0.39 4.69 16 28 C 0.14 3.60 4.80 86.41 0.41 4.01 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.81 7.95 -2.39 -0.02 0.79 16 32 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.23 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.15 0.67 7.19 -2.39 -0.02 0.65 16 35 H 0.16 0.74 7.11 -2.39 -0.02 0.72 16 36 H 0.08 1.26 5.81 -2.39 -0.01 1.24 16 37 H 0.12 0.42 6.26 -2.39 -0.01 0.40 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.79 7.30 -2.39 -0.02 0.77 16 40 H 0.07 2.12 4.44 -2.38 -0.01 2.11 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.03 1.22 7.69 -2.39 -0.02 1.21 16 43 H 0.06 1.57 7.58 -2.38 -0.02 1.55 16 44 H 0.06 2.18 7.71 -2.39 -0.02 2.16 16 45 H 0.07 2.28 7.77 -2.39 -0.02 2.26 16 46 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 47 H 0.07 3.75 5.87 -2.39 -0.01 3.74 16 48 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 49 H 0.02 0.66 7.65 -2.39 -0.02 0.64 16 50 H 0.09 2.88 3.49 -2.39 -0.01 2.87 16 51 H 0.07 2.12 6.87 -2.39 -0.02 2.10 16 52 H 0.07 1.73 7.63 -2.39 -0.02 1.71 16 Total: -1.00 -78.86 389.36 4.57 -74.29 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.92 Total: 15.79 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 9.05 Total: 8.01 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -7.39 Total: -126.52 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.05 Total: -17.84 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -78.86 4.57 -74.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045951668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.128 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds