Wall clock time and date at job start Wed Apr 1 2020 03:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30452 * 125.99219 * 2 1 4 4 N 1.39932 * 108.89892 * 180.26350 * 3 2 1 5 5 H 0.96998 * 125.75554 * 179.77591 * 4 3 2 6 6 C 1.34260 * 108.48881 * 359.75247 * 4 3 2 7 7 C 1.50707 * 126.28744 * 179.97438 * 6 4 3 8 8 C 1.38038 * 107.42156 * 359.97438 * 6 4 3 9 9 C 1.47432 * 126.41641 * 179.97438 * 8 6 4 10 10 O 1.21599 * 119.99697 * 90.00076 * 9 8 6 11 11 N 1.35010 * 120.00035 * 270.00454 * 9 8 6 12 12 C 1.43636 * 119.94731 * 1.45274 * 11 9 8 13 13 C 1.54974 * 115.59537 * 265.24491 * 12 11 9 14 14 C 1.55210 * 108.96523 * 337.36710 * 13 12 11 15 15 C 1.49325 * 110.60360 * 302.35090 * 14 13 12 16 16 C 1.53286 * 108.22824 * 101.43838 * 15 14 13 17 17 C 1.55940 * 105.48591 * 155.79443 * 16 15 14 18 18 C 1.55656 * 100.63098 * 293.39187 * 17 16 15 19 19 N 1.48234 * 106.45970 * 340.82802 * 18 17 16 20 20 C 1.35525 * 127.58116 * 164.22935 * 19 18 17 21 21 H 1.08002 * 119.99654 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00175 * 0.02562 * 20 19 18 23 23 N 1.31622 * 119.99870 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99938 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47131 * 90.00424 * 24 22 20 26 26 H 1.48505 * 109.46746 * 210.00414 * 24 22 20 27 27 H 1.48503 * 109.46799 * 329.99951 * 24 22 20 28 28 C 1.48348 * 104.53970 * 343.78979 * 19 18 17 29 29 C 1.44487 * 114.11135 * 285.24017 * 16 15 14 30 30 H 1.09000 * 109.47061 * 270.14041 * 1 2 3 31 31 H 1.09000 * 109.46830 * 30.14099 * 1 2 3 32 32 H 1.09003 * 109.47560 * 150.14389 * 1 2 3 33 33 H 1.08993 * 109.47029 * 270.02696 * 7 6 4 34 34 H 1.09005 * 109.46760 * 30.02801 * 7 6 4 35 35 H 1.08996 * 109.46758 * 150.02356 * 7 6 4 36 36 H 1.08840 * 108.34517 * 26.96056 * 12 11 9 37 37 H 1.08944 * 108.01373 * 143.90290 * 12 11 9 38 38 H 1.08973 * 109.47950 * 96.89450 * 13 12 11 39 39 H 1.08840 * 109.70337 * 217.10518 * 13 12 11 40 40 H 1.08441 * 108.53850 * 64.95356 * 14 13 12 41 41 H 1.09450 * 108.45854 * 182.89439 * 14 13 12 42 42 H 1.09562 * 110.13510 * 341.95948 * 15 14 13 43 43 H 1.09122 * 110.44198 * 222.33598 * 15 14 13 44 44 H 1.08453 * 110.99913 * 176.55475 * 17 16 15 45 45 H 1.08293 * 111.26740 * 50.52532 * 17 16 15 46 46 H 1.08572 * 109.32877 * 222.22535 * 18 17 16 47 47 H 1.08430 * 109.75492 * 100.06337 * 18 17 16 48 48 H 0.96992 * 119.99641 * 179.97438 * 23 22 20 49 49 H 1.07235 * 112.09795 * 164.59258 * 28 19 18 50 50 H 1.08928 * 109.97265 * 290.42810 * 28 19 18 51 51 H 1.09841 * 110.03926 * 173.72124 * 29 16 15 52 52 H 1.09848 * 110.06457 * 292.14050 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0061 5 1 4.3842 1.2300 -0.0105 6 6 3.6438 -0.6980 -0.0043 7 6 4.8800 -1.5601 -0.0098 8 6 2.3372 -1.1433 0.0034 9 6 1.8915 -2.5486 0.0073 10 8 1.7135 -3.1270 1.0620 11 7 1.6809 -3.1932 -1.1601 12 6 1.9216 -2.5188 -2.4052 13 6 0.6836 -1.8494 -3.0542 14 6 -0.6007 -2.5343 -2.5153 15 6 -0.5730 -4.0002 -2.7987 16 6 -0.1740 -4.7300 -1.5111 17 6 -0.7498 -6.1721 -1.6544 18 6 -2.2776 -5.8761 -1.6188 19 7 -2.4309 -4.5318 -1.0134 20 6 -3.5253 -3.7329 -1.0408 21 1 -3.5021 -2.7684 -0.5554 22 6 -4.6762 -4.1543 -1.6926 23 7 -4.7047 -5.3300 -2.2837 24 14 -6.1844 -3.0528 -1.7310 25 1 -6.1264 -2.1756 -2.9277 26 1 -7.4084 -3.8915 -1.7908 27 1 -6.2173 -2.2158 -0.5047 28 6 -1.1242 -4.2645 -0.3639 29 6 1.2283 -4.6200 -1.1806 30 1 -0.3633 0.0025 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8913 -0.5116 33 1 5.1726 -1.7690 -1.0387 34 1 5.6897 -1.0373 0.4993 35 1 4.6715 -2.4973 0.5061 36 1 2.6767 -1.7527 -2.2395 37 1 2.3242 -3.2456 -3.1098 38 1 0.6644 -0.7914 -2.7941 39 1 0.7331 -1.9572 -4.1361 40 1 -0.6764 -2.3368 -1.4517 41 1 -1.4665 -2.0911 -3.0171 42 1 0.1610 -4.2190 -3.5821 43 1 -1.5517 -4.3409 -3.1403 44 1 -0.4652 -6.7900 -0.8098 45 1 -0.4705 -6.6141 -2.6028 46 1 -2.7730 -6.6178 -0.9997 47 1 -2.6752 -5.8797 -2.6276 48 1 -5.5089 -5.6246 -2.7388 49 1 -1.0019 -3.2287 -0.1149 50 1 -0.9972 -4.9171 0.4990 51 1 1.4192 -5.0680 -0.1960 52 1 1.8330 -5.1665 -1.9171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045975143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:34 Heat of formation + Delta-G solvation = 67.688232 kcal Electronic energy + Delta-G solvation = -33733.509858 eV Core-core repulsion = 29735.316923 eV Total energy + Delta-G solvation = -3998.192936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61248 -41.54943 -39.63244 -37.31402 -34.89165 -34.57639 -33.97080 -32.83940 -31.96524 -30.39456 -29.29390 -28.46617 -27.95423 -27.34219 -25.63910 -25.23689 -23.30250 -21.88438 -21.51143 -21.14673 -19.68318 -19.49869 -18.79634 -18.34452 -17.73463 -17.00108 -16.70801 -16.49036 -16.32221 -15.94046 -15.46475 -15.26190 -15.00080 -14.84626 -14.65976 -14.42866 -14.27993 -14.10908 -13.89552 -13.54560 -13.49384 -13.36783 -13.32720 -12.99241 -12.91302 -12.87048 -12.81102 -12.63441 -12.37051 -12.02905 -12.01248 -11.90785 -11.78308 -11.69399 -11.39521 -11.09525 -10.99376 -10.88534 -10.75641 -10.63404 -10.36141 -9.62368 -9.51454 -8.82984 -7.74571 -5.05852 0.71250 1.37000 1.45728 1.46468 1.54431 1.59793 1.79243 2.20937 2.53995 3.39976 3.46353 3.58098 3.64669 3.79847 3.94733 3.99662 4.08095 4.14591 4.18516 4.26458 4.31682 4.37641 4.53881 4.60413 4.65943 4.68289 4.70919 4.75695 4.80285 4.81354 4.87171 4.91558 4.93641 5.00804 5.03089 5.05365 5.07494 5.11914 5.20470 5.26495 5.41549 5.42548 5.45591 5.54628 5.63127 5.71655 5.84806 5.87127 5.91854 6.26559 6.31342 6.57053 6.59734 7.14818 7.27759 7.81034 8.60035 9.34957 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.004018 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.377784 B = 6966.359539 C = 7891.425485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.112 3.888 3 N -0.317 5.317 4 N -0.448 5.448 5 H 0.457 0.543 6 C 0.145 3.855 7 C -0.097 4.097 8 C -0.303 4.303 9 C 0.602 3.398 10 O -0.578 6.578 11 N -0.584 5.584 12 C 0.112 3.888 13 C -0.129 4.129 14 C -0.103 4.103 15 C -0.077 4.077 16 C -0.083 4.083 17 C -0.118 4.118 18 C 0.171 3.829 19 N -0.610 5.610 20 C -0.208 4.208 21 H 0.070 0.930 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.963 3.037 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.277 1.277 28 C 0.143 3.857 29 C 0.146 3.854 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.087 0.913 46 H -0.021 1.021 47 H 0.052 0.948 48 H 0.243 0.757 49 H 0.044 0.956 50 H 0.009 0.991 51 H 0.075 0.925 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.650 7.874 -2.396 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 N -0.141 5.141 4 N -0.156 5.156 5 H 0.305 0.695 6 C 0.011 3.989 7 C -0.155 4.155 8 C -0.318 4.318 9 C 0.390 3.610 10 O -0.457 6.457 11 N -0.314 5.314 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.141 4.141 15 C -0.115 4.115 16 C -0.085 4.085 17 C -0.157 4.157 18 C 0.046 3.954 19 N -0.334 5.334 20 C -0.338 4.338 21 H 0.088 0.912 22 C -0.259 4.259 23 N -0.601 5.601 24 Si 0.793 3.207 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.202 1.202 28 C 0.018 3.982 29 C 0.025 3.975 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.106 0.894 46 H -0.003 1.003 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.063 0.937 50 H 0.027 0.973 51 H 0.094 0.906 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 24.334 8.885 -1.913 25.976 hybrid contribution -1.708 -0.118 0.326 1.743 sum 22.626 8.767 -1.587 24.317 Atomic orbital electron populations 1.20381 0.86766 1.03981 1.03336 1.22277 0.96848 0.89286 0.97021 1.77039 0.87420 1.22158 1.27450 1.45940 1.07220 1.04890 1.57545 0.69476 1.21772 0.96177 0.85292 0.95635 1.20734 0.91124 0.97936 1.05684 1.19836 0.93482 0.93369 1.25127 1.17639 0.75668 0.84704 0.83013 1.90751 1.53592 1.68745 1.32616 1.47896 1.65013 1.12742 1.05735 1.21235 0.96800 0.97957 0.85172 1.22795 0.94387 0.98927 1.00672 1.21161 0.96387 0.95854 1.00694 1.20804 1.00856 0.94575 0.95247 1.20886 0.94383 0.96706 0.96568 1.23093 0.95529 0.95221 1.01855 1.21447 0.92073 0.84773 0.97116 1.44766 1.10416 1.17300 1.60913 1.18902 0.90160 0.97571 1.27175 0.91206 1.25336 1.00180 0.98435 1.01979 1.70080 1.27674 1.20505 1.41875 0.85289 0.79778 0.77916 0.77740 1.21401 1.22467 1.20219 1.22081 0.85868 0.96940 0.93303 1.20155 0.92911 0.80736 1.03741 0.90586 0.89350 0.91086 0.87007 0.87595 0.90387 0.90152 0.88719 0.92682 0.89713 0.92723 0.95700 0.91102 0.93611 0.91548 0.89422 1.00323 0.92952 0.94764 0.93748 0.97321 0.90638 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.43 10.28 71.23 0.73 -1.70 16 2 C 0.11 3.06 7.26 43.51 0.32 3.38 16 3 N -0.32 -7.82 12.63 -46.67 -0.59 -8.41 16 4 N -0.45 -7.35 7.29 -46.79 -0.34 -7.69 16 5 H 0.46 3.76 8.96 -213.43 -1.91 1.85 16 6 C 0.15 2.55 6.88 42.14 0.29 2.84 16 7 C -0.10 -0.89 10.25 71.24 0.73 -0.16 16 8 C -0.30 -7.77 4.08 -20.15 -0.08 -7.85 16 9 C 0.60 17.86 6.86 86.63 0.59 18.45 16 10 O -0.58 -22.03 16.64 -4.03 -0.07 -22.10 16 11 N -0.58 -14.61 2.08 -832.66 -1.73 -16.34 16 12 C 0.11 2.19 5.11 87.58 0.45 2.63 16 13 C -0.13 -3.01 6.22 32.03 0.20 -2.81 16 14 C -0.10 -3.43 4.78 30.18 0.14 -3.28 16 15 C -0.08 -2.62 3.94 29.52 0.12 -2.50 16 16 C -0.08 -2.75 0.72 -52.57 -0.04 -2.79 16 17 C -0.12 -4.15 5.92 32.53 0.19 -3.96 16 18 C 0.17 8.35 4.67 86.96 0.41 8.75 16 19 N -0.61 -31.22 2.14 -686.61 -1.47 -32.69 16 20 C -0.21 -11.73 10.35 84.26 0.87 -10.86 16 21 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 22 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 23 N -0.95 -57.30 10.48 21.65 0.23 -57.08 16 24 Si 0.96 47.04 29.55 68.60 2.03 49.07 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 28 C 0.14 6.21 5.69 87.09 0.50 6.71 16 29 C 0.15 3.83 4.82 83.19 0.40 4.23 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.25 5.45 -2.39 -0.01 2.24 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 35 H 0.08 1.01 7.96 -2.39 -0.02 0.99 16 36 H 0.08 1.37 6.32 -2.47 -0.02 1.36 16 37 H 0.09 1.37 7.92 -2.42 -0.02 1.35 16 38 H 0.05 1.31 8.14 -2.40 -0.02 1.29 16 39 H 0.08 1.69 8.13 -2.47 -0.02 1.67 16 40 H 0.05 2.03 2.57 -2.68 -0.01 2.03 16 41 H 0.02 0.94 8.18 -2.15 -0.02 0.92 16 42 H 0.07 1.92 7.56 -2.09 -0.02 1.91 16 43 H 0.05 2.01 5.68 -2.32 -0.01 1.99 16 44 H 0.07 2.20 8.09 -2.67 -0.02 2.17 16 45 H 0.09 2.64 8.05 -2.76 -0.02 2.62 16 46 H -0.02 -1.18 8.11 -2.61 -0.02 -1.20 16 47 H 0.05 2.85 5.90 -2.69 -0.02 2.83 16 48 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 49 H 0.04 2.00 6.07 -3.30 -0.02 1.98 16 50 H 0.01 0.41 8.00 -2.42 -0.02 0.39 16 51 H 0.08 2.21 7.25 -1.94 -0.01 2.20 16 52 H 0.11 2.05 8.08 -1.93 -0.02 2.04 16 Total: -1.00 -76.94 390.59 3.37 -73.57 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -0.97 Total: 13.96 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.28 Total: 7.71 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -3.90 Total: -122.22 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.07 Total: -22.10 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -76.94 3.37 -73.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045975143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.262 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds