Wall clock time and date at job start Wed Apr 1 2020 03:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30446 * 125.98790 * 2 1 4 4 N 1.39942 * 108.89659 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.75471 * 180.02562 * 4 3 2 6 6 C 1.34257 * 108.48984 * 359.74976 * 4 3 2 7 7 C 1.50702 * 126.29291 * 180.24078 * 6 4 3 8 8 C 1.38044 * 107.41757 * 0.39482 * 6 4 3 9 9 C 1.47431 * 126.41600 * 179.87241 * 8 6 4 10 10 O 1.21603 * 119.99718 * 269.71282 * 9 8 6 11 11 N 1.34779 * 120.00152 * 89.70745 * 9 8 6 12 12 C 1.47548 * 118.63895 * 0.02562 * 11 9 8 13 13 C 1.53939 * 112.18798 * 137.88667 * 12 11 9 14 14 C 1.50882 * 110.17977 * 319.35289 * 13 12 11 15 15 C 1.52632 * 109.40107 * 91.82706 * 14 13 12 16 16 C 1.47097 * 114.23735 * 275.32671 * 15 14 13 17 17 C 1.54243 * 112.30711 * 183.85097 * 16 15 14 18 18 C 1.54411 * 104.92141 * 122.25844 * 17 16 15 19 19 N 1.48175 * 104.53793 * 24.12282 * 18 17 16 20 20 C 1.36943 * 127.87986 * 140.10659 * 19 18 17 21 21 H 1.07997 * 119.99740 * 194.84148 * 20 19 18 22 22 C 1.38816 * 119.99744 * 14.83265 * 20 19 18 23 23 N 1.31614 * 120.00310 * 9.28959 * 22 20 19 24 24 Si 1.86797 * 119.99728 * 189.28844 * 22 20 19 25 25 H 1.48494 * 109.47398 * 60.00331 * 24 22 20 26 26 H 1.48505 * 109.47134 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47107 * 300.00216 * 24 22 20 28 28 C 1.48167 * 104.24130 * 320.10100 * 19 18 17 29 29 C 1.44594 * 118.64240 * 180.02562 * 11 9 8 30 30 H 1.08998 * 109.46873 * 270.00475 * 1 2 3 31 31 H 1.08998 * 109.46720 * 30.00232 * 1 2 3 32 32 H 1.08996 * 109.47053 * 149.99917 * 1 2 3 33 33 H 1.09000 * 109.47274 * 270.18315 * 7 6 4 34 34 H 1.09002 * 109.46701 * 30.18032 * 7 6 4 35 35 H 1.08999 * 109.47294 * 150.17513 * 7 6 4 36 36 H 1.09006 * 108.93797 * 258.57882 * 12 11 9 37 37 H 1.09003 * 108.94382 * 17.18524 * 12 11 9 38 38 H 1.09003 * 109.34954 * 79.56216 * 13 12 11 39 39 H 1.08991 * 109.35738 * 199.12954 * 13 12 11 40 40 H 1.09005 * 109.47605 * 331.84895 * 14 13 12 41 41 H 1.09004 * 109.49548 * 211.81862 * 14 13 12 42 42 H 1.09002 * 108.52814 * 154.09540 * 15 14 13 43 43 H 1.08996 * 108.40926 * 36.46868 * 15 14 13 44 44 H 1.09007 * 110.34839 * 241.11666 * 17 16 15 45 45 H 1.08998 * 110.35334 * 3.39565 * 17 16 15 46 46 H 1.09003 * 110.42505 * 142.88813 * 18 17 16 47 47 H 1.09000 * 110.42344 * 265.35982 * 18 17 16 48 48 H 0.96995 * 120.00216 * 179.97438 * 23 22 20 49 49 H 1.08994 * 110.42251 * 281.05799 * 28 19 18 50 50 H 1.09009 * 110.42147 * 158.59341 * 28 19 18 51 51 H 1.08999 * 109.47019 * 30.58939 * 29 11 9 52 52 H 1.08997 * 109.47092 * 150.59526 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6112 0.6442 0.0006 5 1 4.3843 1.2301 0.0011 6 6 3.6439 -0.6979 0.0065 7 6 4.8800 -1.5600 0.0143 8 6 2.3373 -1.1432 0.0006 9 6 1.8915 -2.5485 0.0013 10 8 1.7082 -3.1287 -1.0515 11 7 1.6873 -3.1902 1.1688 12 6 1.9184 -2.4573 2.4284 13 6 0.8253 -2.7403 3.4747 14 6 -0.5300 -2.7829 2.8129 15 6 -0.8520 -4.2191 2.4087 16 6 -0.2963 -4.6191 1.1068 17 6 -0.7266 -6.0431 0.6992 18 6 -1.4375 -5.8696 -0.6605 19 7 -0.8802 -4.6132 -1.2140 20 6 -0.5346 -4.3467 -2.5121 21 1 0.0769 -3.4868 -2.7423 22 6 -0.9701 -5.1819 -3.5317 23 7 -1.8596 -6.1188 -3.2803 24 14 -0.2936 -4.9760 -5.2607 25 1 1.1786 -5.1696 -5.2426 26 1 -0.9147 -5.9829 -6.1584 27 1 -0.6074 -3.6117 -5.7558 28 6 -0.7823 -3.7108 -0.0429 29 6 1.2508 -4.5682 1.1352 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 5.1833 -1.7697 -1.0114 34 1 5.6845 -1.0369 0.5313 35 1 4.6663 -2.4969 0.5288 36 1 2.8846 -2.7529 2.8375 37 1 1.9378 -1.3881 2.2173 38 1 1.0235 -3.6991 3.9538 39 1 0.8345 -1.9534 4.2287 40 1 -0.5216 -2.1489 1.9262 41 1 -1.2867 -2.4230 3.5100 42 1 -1.9353 -4.3343 2.3732 43 1 -0.4584 -4.8884 3.1737 44 1 0.1466 -6.6865 0.5910 45 1 -1.4144 -6.4569 1.4365 46 1 -1.2104 -6.7086 -1.3183 47 1 -2.5142 -5.7777 -0.5178 48 1 -2.1641 -6.7022 -3.9929 49 1 -1.7583 -3.2873 0.1936 50 1 -0.0587 -2.9180 -0.2331 51 1 1.6465 -5.0530 0.2428 52 1 1.6152 -5.0865 2.0222 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045975144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:39 Heat of formation + Delta-G solvation = 77.328225 kcal Electronic energy + Delta-G solvation = -34068.179564 eV Core-core repulsion = 30070.404650 eV Total energy + Delta-G solvation = -3997.774914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.58682 -40.21349 -37.59765 -35.99992 -33.56647 -33.40567 -32.63523 -31.67224 -30.38180 -28.65636 -28.26361 -27.47741 -26.25997 -25.70260 -24.84122 -23.08222 -21.77773 -20.61748 -20.10896 -20.00884 -18.72506 -17.99170 -17.55464 -16.77369 -16.37540 -15.71442 -15.16616 -15.05977 -14.62550 -14.41337 -14.20685 -13.88382 -13.58522 -13.51412 -13.37436 -13.30369 -13.02748 -12.88474 -12.50027 -12.44129 -12.29757 -12.11080 -12.00865 -11.86278 -11.83107 -11.25207 -11.07590 -10.83913 -10.74528 -10.70751 -10.58574 -10.52749 -10.18793 -9.90420 -9.89781 -9.54809 -9.46939 -9.36117 -9.30935 -9.22031 -8.49769 -8.34325 -8.08456 -6.50372 -5.45843 -2.75126 1.67014 2.48878 2.65736 3.05301 3.47766 3.59323 3.61966 3.66489 4.43082 4.59586 4.75186 4.76340 4.81494 4.98101 5.02282 5.20242 5.25190 5.27441 5.30078 5.32852 5.55335 5.63582 5.65736 5.67696 5.73265 5.76446 5.79748 5.80711 5.92220 5.94380 5.96064 6.02422 6.05552 6.21339 6.27325 6.32852 6.39727 6.45056 6.49828 6.56829 6.62894 6.79435 6.95243 7.09128 7.10771 7.11681 7.16731 7.57780 7.60795 7.76226 7.85219 8.10964 8.53987 8.75922 9.49430 10.10264 10.87040 11.69113 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.005375 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.994703 B = 5208.358561 C = 6817.873695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.119 3.881 3 N -0.299 5.299 4 N -0.468 5.468 5 H 0.438 0.562 6 C 0.120 3.880 7 C -0.096 4.096 8 C -0.266 4.266 9 C 0.575 3.425 10 O -0.476 6.476 11 N -0.600 5.600 12 C 0.115 3.885 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.094 4.094 16 C -0.091 4.091 17 C -0.131 4.131 18 C 0.154 3.846 19 N -0.581 5.581 20 C -0.182 4.182 21 H 0.081 0.919 22 C -0.021 4.021 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.288 1.288 28 C 0.133 3.867 29 C 0.136 3.864 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.013 0.987 48 H 0.247 0.753 49 H 0.005 0.995 50 H 0.065 0.935 51 H 0.089 0.911 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.293 9.809 16.784 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 N -0.122 5.122 4 N -0.174 5.174 5 H 0.282 0.718 6 C -0.012 4.012 7 C -0.154 4.154 8 C -0.280 4.280 9 C 0.360 3.640 10 O -0.348 6.348 11 N -0.334 5.334 12 C -0.008 4.008 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.131 4.131 16 C -0.094 4.094 17 C -0.170 4.170 18 C 0.028 3.972 19 N -0.303 5.303 20 C -0.311 4.311 21 H 0.099 0.901 22 C -0.216 4.216 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.215 1.215 28 C 0.006 3.994 29 C 0.013 3.987 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.031 0.969 48 H 0.057 0.943 49 H 0.023 0.977 50 H 0.083 0.917 51 H 0.107 0.893 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.188 10.657 15.924 22.188 hybrid contribution 0.725 -0.449 -0.795 1.166 sum 11.913 10.207 15.129 21.795 Atomic orbital electron populations 1.20387 0.86059 1.04593 1.03250 1.22344 0.96956 0.88854 0.96652 1.77069 0.86099 1.22228 1.26771 1.45918 1.07522 1.04647 1.59330 0.71791 1.21320 0.96179 0.84932 0.98740 1.20523 0.92078 0.98623 1.04175 1.20030 0.91894 0.94958 1.21163 1.17397 0.77789 0.84667 0.84158 1.91078 1.47219 1.66336 1.30175 1.47634 1.67797 1.12765 1.05214 1.21799 0.97451 0.96942 0.84656 1.21746 0.95420 1.02097 0.97393 1.21083 0.95724 0.98074 1.00568 1.20366 1.00763 0.95443 0.96560 1.21090 0.94927 0.97878 0.95493 1.22789 0.99924 0.94231 1.00097 1.21541 0.93684 0.92072 0.89868 1.44776 1.73558 1.08948 1.03038 1.19082 1.22088 1.09431 0.80459 0.90136 1.24770 0.99143 1.00287 0.97352 1.69886 1.33431 1.23320 1.31214 0.86285 0.78422 0.76759 0.84902 1.21547 1.22102 1.21538 1.21954 0.96708 0.93673 0.87067 1.21610 0.94207 0.80877 1.02012 0.90174 0.90416 0.89291 0.89417 0.90748 0.89408 0.92811 0.90514 0.91669 0.91354 0.91161 0.92367 0.92520 0.93004 0.92728 0.93167 0.89698 0.96872 0.94264 0.97727 0.91676 0.89273 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.28 36.01 0.37 -0.78 16 2 C 0.12 1.74 6.94 -82.02 -0.57 1.17 16 3 N -0.30 -4.12 12.63 33.90 0.43 -3.69 16 4 N -0.47 -5.04 7.29 33.86 0.25 -4.79 16 5 H 0.44 3.06 8.96 -182.72 -1.64 1.43 16 6 C 0.12 1.41 7.29 -81.60 -0.60 0.81 16 7 C -0.10 -0.82 10.25 36.01 0.37 -0.45 16 8 C -0.27 -3.93 3.82 -105.07 -0.40 -4.33 16 9 C 0.57 9.82 4.81 -12.52 -0.06 9.76 16 10 O -0.48 -10.69 12.62 5.27 0.07 -10.63 16 11 N -0.60 -8.63 2.00 -173.87 -0.35 -8.98 16 12 C 0.11 1.24 5.98 -2.98 -0.02 1.22 16 13 C -0.13 -1.24 5.70 -27.30 -0.16 -1.40 16 14 C -0.12 -1.38 5.45 -27.98 -0.15 -1.53 16 15 C -0.09 -1.30 3.83 -29.75 -0.11 -1.41 16 16 C -0.09 -1.57 0.67 -155.02 -0.10 -1.68 16 17 C -0.13 -2.51 6.24 -25.34 -0.16 -2.67 16 18 C 0.15 3.85 5.93 -2.38 -0.01 3.84 16 19 N -0.58 -15.36 3.32 -168.81 -0.56 -15.92 16 20 C -0.18 -5.37 9.51 -15.06 -0.14 -5.51 16 21 H 0.08 2.44 6.73 -52.49 -0.35 2.09 16 22 C -0.02 -0.64 5.40 -17.43 -0.09 -0.73 16 23 N -0.93 -28.74 10.83 55.49 0.60 -28.14 16 24 Si 0.90 24.03 29.56 -169.99 -5.03 19.00 16 25 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 27 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 28 C 0.13 2.85 4.41 -2.41 -0.01 2.84 16 29 C 0.14 2.18 4.21 -4.10 -0.02 2.16 16 30 H 0.08 0.92 7.90 -51.93 -0.41 0.51 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.45 6.76 -51.93 -0.35 1.10 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.85 6.03 -51.93 -0.31 0.54 16 38 H 0.06 0.61 7.32 -51.93 -0.38 0.23 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.95 6.21 -51.93 -0.32 0.63 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.64 7.37 -51.93 -0.38 0.26 16 44 H 0.05 1.03 7.53 -51.93 -0.39 0.63 16 45 H 0.05 0.86 7.79 -51.93 -0.40 0.45 16 46 H 0.08 2.38 6.45 -51.93 -0.34 2.05 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.01 0.11 7.96 -51.93 -0.41 -0.30 16 50 H 0.07 1.39 2.32 -51.92 -0.12 1.27 16 51 H 0.09 1.76 7.09 -51.93 -0.37 1.40 16 52 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -35.88 386.22 -10.17 -46.06 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -9.53 Total: -0.06 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.87 Total: 1.33 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.37 Total: -61.51 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.03 Total: 19.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.88 -10.17 -46.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045975144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.384 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds