Wall clock time and date at job start Wed Apr 1 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34672 * 125.98746 * 2 1 4 4 N 1.36876 * 106.81922 * 180.12099 * 3 2 1 5 5 C 1.46496 * 126.40136 * 179.84360 * 4 3 2 6 6 C 1.52996 * 109.47194 * 303.28756 * 5 4 3 7 7 C 1.53005 * 109.47120 * 63.28827 * 5 4 3 8 8 C 1.50698 * 109.47393 * 183.28602 * 5 4 3 9 9 O 1.21284 * 119.99880 * 238.43781 * 8 5 4 10 10 N 1.34772 * 119.99999 * 58.43794 * 8 5 4 11 11 C 1.46500 * 120.00143 * 176.28985 * 10 8 5 12 12 H 1.09001 * 109.32522 * 48.41467 * 11 10 8 13 13 C 1.53031 * 109.32771 * 288.76945 * 11 10 8 14 14 C 1.53966 * 108.82471 * 295.14510 * 13 11 10 15 15 H 1.08999 * 112.99165 * 169.00119 * 14 13 11 16 16 C 1.55423 * 106.41603 * 293.81199 * 14 13 11 17 17 C 1.55179 * 100.35056 * 73.38222 * 16 14 13 18 18 H 1.09000 * 112.48467 * 162.67452 * 17 16 14 19 19 C 1.52991 * 109.32518 * 167.88213 * 11 10 8 20 20 N 1.47781 * 104.25431 * 40.55453 * 17 16 14 21 21 C 1.36934 * 125.85806 * 153.50550 * 20 17 16 22 22 H 1.08000 * 119.99996 * 151.04918 * 21 20 17 23 23 C 1.38813 * 120.00012 * 331.04978 * 21 20 17 24 24 N 1.31621 * 120.00240 * 161.16317 * 23 21 20 25 25 Si 1.86797 * 119.99850 * 341.15664 * 23 21 20 26 26 H 1.48503 * 109.47076 * 95.39355 * 25 23 21 27 27 H 1.48500 * 109.47154 * 215.39160 * 25 23 21 28 28 H 1.48500 * 109.47254 * 335.39729 * 25 23 21 29 29 C 1.49346 * 108.54360 * 333.48200 * 20 17 16 30 30 C 1.35049 * 107.20430 * 359.58204 * 4 3 2 31 31 N 1.30496 * 108.69763 * 0.26253 * 30 4 3 32 32 H 1.08993 * 109.46923 * 270.32339 * 1 2 3 33 33 H 1.08992 * 109.47251 * 30.33129 * 1 2 3 34 34 H 1.09004 * 109.46668 * 150.32808 * 1 2 3 35 35 H 1.07998 * 126.59095 * 359.97438 * 3 2 1 36 36 H 1.09002 * 109.47434 * 65.57269 * 6 5 4 37 37 H 1.08996 * 109.47704 * 185.57496 * 6 5 4 38 38 H 1.09003 * 109.47279 * 305.57488 * 6 5 4 39 39 H 1.08990 * 109.47298 * 59.99972 * 7 5 4 40 40 H 1.08995 * 109.46833 * 180.02562 * 7 5 4 41 41 H 1.08999 * 109.46584 * 299.99824 * 7 5 4 42 42 H 0.96999 * 120.00627 * 356.29399 * 10 8 5 43 43 H 1.09002 * 109.57342 * 54.94697 * 13 11 10 44 44 H 1.09001 * 109.57906 * 175.20299 * 13 11 10 45 45 H 1.08998 * 111.23906 * 191.16060 * 16 14 13 46 46 H 1.09003 * 111.24024 * 315.56196 * 16 14 13 47 47 H 1.09006 * 109.52932 * 185.06474 * 19 11 10 48 48 H 1.08995 * 109.53271 * 305.28557 * 19 11 10 49 49 H 0.96994 * 120.00294 * 179.97438 * 24 23 21 50 50 H 1.09004 * 110.79855 * 242.04260 * 29 20 17 51 51 H 1.08996 * 110.25662 * 120.02789 * 29 20 17 52 52 H 1.07999 * 125.65185 * 180.22620 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6403 -0.0028 5 6 4.7996 1.4686 -0.0070 6 6 4.7695 2.4083 -1.2140 7 6 4.8570 2.2935 1.2803 8 6 6.0157 0.5826 -0.0904 9 8 6.8605 0.6289 0.7785 10 7 6.1646 -0.2613 -1.1307 11 6 7.3843 -1.0633 -1.2546 12 1 7.5974 -1.5455 -0.3005 13 6 8.5536 -0.1517 -1.6335 14 6 8.2928 0.4350 -3.0329 15 1 8.9823 1.2381 -3.2931 16 6 8.3420 -0.7595 -4.0261 17 6 6.9955 -1.4550 -3.6928 18 1 6.6794 -2.1473 -4.4731 19 6 7.1780 -2.1365 -2.3252 20 7 6.0448 -0.3385 -3.5097 21 6 4.6906 -0.3980 -3.7036 22 1 4.0352 0.2478 -3.1382 23 6 4.1602 -1.2886 -4.6269 24 7 2.8884 -1.6220 -4.5643 25 14 5.2513 -2.0137 -5.9585 26 1 5.7584 -3.3376 -5.5163 27 1 4.4655 -2.1768 -7.2080 28 1 6.3973 -1.1034 -6.2096 29 6 6.8086 0.8695 -3.0762 30 6 3.5450 -0.7094 0.0050 31 7 2.2953 -1.0852 0.0066 32 1 -0.3633 0.0058 1.0276 33 1 -0.3633 0.8869 -0.5189 34 1 -0.3633 -0.8930 -0.5088 35 1 1.9750 2.1201 -0.0004 36 1 3.9467 3.1148 -1.1041 37 1 5.7112 2.9539 -1.2734 38 1 4.6290 1.8259 -2.1246 39 1 4.8784 1.6241 2.1402 40 1 5.7557 2.9101 1.2769 41 1 3.9773 2.9343 1.3406 42 1 5.4642 -0.3377 -1.7974 43 1 8.6359 0.6574 -0.9078 44 1 9.4782 -0.7288 -1.6436 45 1 8.3624 -0.4133 -5.0595 46 1 9.1879 -1.4139 -3.8152 47 1 8.0489 -2.7911 -2.3576 48 1 6.2895 -2.7217 -2.0882 49 1 2.5177 -2.2440 -5.2096 50 1 6.4873 1.1962 -2.0871 51 1 6.6779 1.6772 -3.7963 52 1 4.4005 -1.3686 0.0087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047095248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:54 Heat of formation + Delta-G solvation = 113.355317 kcal Electronic energy + Delta-G solvation = -34816.061414 eV Core-core repulsion = 30819.848751 eV Total energy + Delta-G solvation = -3996.212663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.06168 -40.92619 -38.69101 -35.53852 -33.93125 -33.33948 -31.55208 -31.28672 -30.90162 -30.00926 -28.49594 -27.32459 -26.49570 -25.60677 -23.50007 -23.05743 -22.03033 -21.10590 -20.29785 -19.73429 -19.43249 -19.09189 -17.71955 -16.76633 -16.24875 -15.65219 -15.51423 -14.94833 -14.74111 -14.35011 -14.16437 -13.67004 -13.52000 -13.42437 -13.29774 -13.06105 -13.00682 -12.73516 -12.65311 -12.37909 -12.30346 -12.14714 -12.10039 -12.09457 -11.95498 -11.90636 -11.61424 -11.43199 -11.39000 -11.24894 -11.03778 -10.86963 -10.39640 -10.23612 -9.92655 -9.71493 -9.56722 -9.39725 -9.35299 -9.07081 -8.71411 -8.07506 -7.81827 -7.12714 -6.12117 -3.56728 2.46591 2.53178 3.18337 3.35502 3.37277 3.38437 3.44790 3.68642 4.35257 4.57223 4.65745 4.83328 4.91363 5.00773 5.09039 5.15282 5.16647 5.18699 5.25780 5.50866 5.52390 5.57669 5.58347 5.59490 5.68074 5.69509 5.75134 5.76977 5.82079 5.90695 5.96754 6.04411 6.05367 6.05820 6.20725 6.23814 6.27899 6.29515 6.30794 6.41142 6.42159 6.49826 6.65273 6.67547 6.71900 6.72721 6.98677 7.25804 7.54927 7.62309 8.07512 8.12925 8.59045 8.63739 8.65613 9.46230 9.96019 11.00727 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.006559 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.999834 B = 4268.162151 C = 6032.320789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.003 3.997 3 C -0.055 4.055 4 N -0.444 5.444 5 C 0.147 3.853 6 C -0.168 4.168 7 C -0.138 4.138 8 C 0.498 3.502 9 O -0.547 6.547 10 N -0.691 5.691 11 C 0.158 3.842 12 H 0.070 0.930 13 C -0.123 4.123 14 C -0.103 4.103 15 H 0.082 0.918 16 C -0.131 4.131 17 C 0.142 3.858 18 H 0.069 0.931 19 C -0.141 4.141 20 N -0.600 5.600 21 C -0.279 4.279 22 H 0.092 0.908 23 C 0.044 3.956 24 N -0.882 5.882 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.302 1.302 28 H -0.268 1.268 29 C 0.095 3.905 30 C 0.200 3.800 31 N -0.480 5.480 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.166 0.834 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.440 0.560 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.266 0.734 50 H 0.072 0.928 51 H 0.025 0.975 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 6.387 6.972 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 C -0.187 4.187 4 N -0.130 5.130 5 C 0.059 3.941 6 C -0.226 4.226 7 C -0.196 4.196 8 C 0.280 3.720 9 O -0.426 6.426 10 N -0.360 5.360 11 C 0.053 3.947 12 H 0.088 0.912 13 C -0.161 4.161 14 C -0.122 4.122 15 H 0.100 0.900 16 C -0.169 4.169 17 C 0.036 3.964 18 H 0.086 0.914 19 C -0.181 4.181 20 N -0.329 5.329 21 C -0.405 4.405 22 H 0.109 0.891 23 C -0.159 4.159 24 N -0.522 5.522 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.231 1.231 28 H -0.194 1.194 29 C -0.028 4.028 30 C -0.083 4.083 31 N -0.198 5.198 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.183 0.817 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.299 0.701 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.043 0.957 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.879 5.589 7.412 10.988 hybrid contribution 0.663 0.323 -1.441 1.619 sum 6.542 5.912 5.971 10.649 Atomic orbital electron populations 1.19950 0.88255 1.02603 1.01187 1.20598 0.96213 0.88619 1.07231 1.22127 0.82762 0.99999 1.13783 1.45427 1.05522 1.07211 1.54803 1.21047 0.82323 0.91557 0.99222 1.22443 1.03304 0.99365 0.97451 1.21946 1.02947 0.99651 0.95028 1.20174 0.87291 0.81938 0.82552 1.90658 1.44019 1.68355 1.39534 1.48146 1.22604 1.38928 1.26352 1.20719 0.84548 0.91268 0.98175 0.91151 1.22092 0.97562 0.99713 0.96767 1.22526 0.97566 0.97299 0.94836 0.89984 1.23054 0.97535 0.97283 0.99047 1.21849 0.89284 0.90955 0.94285 0.91359 1.22454 1.01905 0.97049 0.96646 1.45766 1.03251 1.04289 1.79599 1.18458 0.78411 1.23930 1.19727 0.89088 1.25258 0.95211 0.98354 0.97106 1.69819 1.12636 1.33646 1.36053 0.86865 0.80453 0.78797 0.82547 1.21327 1.23055 1.19356 1.22993 0.89699 0.90534 0.99610 1.24818 0.97043 0.81699 1.04713 1.70163 1.00162 1.30111 1.19352 0.92196 0.91767 0.91216 0.81656 0.90897 0.90432 0.88854 0.91303 0.90169 0.91439 0.70143 0.91256 0.91456 0.91686 0.91248 0.91272 0.90933 0.92383 0.91102 0.95687 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.42 36.01 0.38 -0.53 16 2 C 0.00 0.05 7.09 -82.85 -0.59 -0.54 16 3 C -0.05 -0.89 10.62 -16.56 -0.18 -1.07 16 4 N -0.44 -7.56 2.61 -105.83 -0.28 -7.83 16 5 C 0.15 2.23 1.04 -132.97 -0.14 2.09 16 6 C -0.17 -2.39 7.09 37.16 0.26 -2.12 16 7 C -0.14 -1.77 7.87 37.16 0.29 -1.48 16 8 C 0.50 8.46 4.45 -10.99 -0.05 8.41 16 9 O -0.55 -10.09 14.95 5.55 0.08 -10.00 16 10 N -0.69 -12.12 1.46 -53.80 -0.08 -12.19 16 11 C 0.16 2.56 2.71 -67.92 -0.18 2.38 16 12 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 13 C -0.12 -1.79 5.16 -26.21 -0.14 -1.92 16 14 C -0.10 -1.57 4.27 -87.93 -0.38 -1.95 16 15 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.13 -2.10 6.19 -24.29 -0.15 -2.25 16 17 C 0.14 2.73 2.96 -65.62 -0.19 2.53 16 18 H 0.07 1.47 2.95 -51.93 -0.15 1.31 16 19 C -0.14 -2.38 5.43 -26.28 -0.14 -2.52 16 20 N -0.60 -12.49 1.46 -159.53 -0.23 -12.73 16 21 C -0.28 -6.92 8.68 -15.06 -0.13 -7.05 16 22 H 0.09 2.44 6.36 -52.49 -0.33 2.11 16 23 C 0.04 1.17 5.45 -17.43 -0.10 1.08 16 24 N -0.88 -25.38 13.97 55.49 0.78 -24.61 16 25 Si 0.88 21.06 24.66 -169.99 -4.19 16.87 16 26 H -0.29 -6.69 6.85 56.52 0.39 -6.30 16 27 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.27 -6.22 6.80 56.52 0.38 -5.84 16 29 C 0.10 1.70 5.04 -1.56 -0.01 1.70 16 30 C 0.20 3.92 10.85 -90.37 -0.98 2.94 16 31 N -0.48 -10.07 11.25 -10.87 -0.12 -10.19 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.08 0.98 7.81 -51.93 -0.41 0.58 16 38 H 0.09 1.63 4.89 -51.93 -0.25 1.38 16 39 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 40 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.07 0.73 8.01 -51.93 -0.42 0.31 16 42 H 0.44 8.60 2.88 -40.93 -0.12 8.49 16 43 H 0.07 1.06 7.07 -51.93 -0.37 0.69 16 44 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 45 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 46 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 47 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.07 1.22 1.79 -54.72 -0.10 1.12 16 51 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.19 3.74 6.69 -52.49 -0.35 3.39 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -30.19 374.09 -8.77 -38.96 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -7.95 Total: 16.40 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.42 Total: -0.31 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: 0.07 Total: -67.55 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.19 Total: 16.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.19 -8.77 -38.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047095248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.312 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds