Wall clock time and date at job start Wed Apr 1 2020 04:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34672 * 125.98746 * 2 1 4 4 N 1.36876 * 106.81922 * 180.12099 * 3 2 1 5 5 C 1.46496 * 126.40136 * 179.84360 * 4 3 2 6 6 C 1.52996 * 109.47194 * 303.28756 * 5 4 3 7 7 C 1.53005 * 109.47120 * 63.28827 * 5 4 3 8 8 C 1.50698 * 109.47393 * 183.28602 * 5 4 3 9 9 O 1.21284 * 119.99880 * 238.43781 * 8 5 4 10 10 N 1.34772 * 119.99999 * 58.43794 * 8 5 4 11 11 C 1.46500 * 120.00143 * 176.28985 * 10 8 5 12 12 H 1.09001 * 109.32522 * 48.41467 * 11 10 8 13 13 C 1.53031 * 109.32771 * 288.76945 * 11 10 8 14 14 C 1.53966 * 108.82471 * 295.14510 * 13 11 10 15 15 H 1.08999 * 112.99165 * 169.00119 * 14 13 11 16 16 C 1.55423 * 106.41603 * 293.81199 * 14 13 11 17 17 C 1.55179 * 100.35056 * 73.38222 * 16 14 13 18 18 H 1.09000 * 112.48467 * 162.67452 * 17 16 14 19 19 C 1.52991 * 109.32518 * 167.88213 * 11 10 8 20 20 N 1.47781 * 104.25431 * 40.55453 * 17 16 14 21 21 C 1.36934 * 125.85806 * 153.50550 * 20 17 16 22 22 H 1.08000 * 119.99996 * 151.04918 * 21 20 17 23 23 C 1.38813 * 120.00012 * 331.04978 * 21 20 17 24 24 N 1.31621 * 120.00240 * 161.16317 * 23 21 20 25 25 Si 1.86797 * 119.99850 * 341.15664 * 23 21 20 26 26 H 1.48503 * 109.47076 * 95.39355 * 25 23 21 27 27 H 1.48500 * 109.47154 * 215.39160 * 25 23 21 28 28 H 1.48500 * 109.47254 * 335.39729 * 25 23 21 29 29 C 1.49346 * 108.54360 * 333.48200 * 20 17 16 30 30 C 1.35049 * 107.20430 * 359.58204 * 4 3 2 31 31 N 1.30496 * 108.69763 * 0.26253 * 30 4 3 32 32 H 1.08993 * 109.46923 * 270.32339 * 1 2 3 33 33 H 1.08992 * 109.47251 * 30.33129 * 1 2 3 34 34 H 1.09004 * 109.46668 * 150.32808 * 1 2 3 35 35 H 1.07998 * 126.59095 * 359.97438 * 3 2 1 36 36 H 1.09002 * 109.47434 * 65.57269 * 6 5 4 37 37 H 1.08996 * 109.47704 * 185.57496 * 6 5 4 38 38 H 1.09003 * 109.47279 * 305.57488 * 6 5 4 39 39 H 1.08990 * 109.47298 * 59.99972 * 7 5 4 40 40 H 1.08995 * 109.46833 * 180.02562 * 7 5 4 41 41 H 1.08999 * 109.46584 * 299.99824 * 7 5 4 42 42 H 0.96999 * 120.00627 * 356.29399 * 10 8 5 43 43 H 1.09002 * 109.57342 * 54.94697 * 13 11 10 44 44 H 1.09001 * 109.57906 * 175.20299 * 13 11 10 45 45 H 1.08998 * 111.23906 * 191.16060 * 16 14 13 46 46 H 1.09003 * 111.24024 * 315.56196 * 16 14 13 47 47 H 1.09006 * 109.52932 * 185.06474 * 19 11 10 48 48 H 1.08995 * 109.53271 * 305.28557 * 19 11 10 49 49 H 0.96994 * 120.00294 * 179.97438 * 24 23 21 50 50 H 1.09004 * 110.79855 * 242.04260 * 29 20 17 51 51 H 1.08996 * 110.25662 * 120.02789 * 29 20 17 52 52 H 1.07999 * 125.65185 * 180.22620 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6403 -0.0028 5 6 4.7996 1.4686 -0.0070 6 6 4.7695 2.4083 -1.2140 7 6 4.8570 2.2935 1.2803 8 6 6.0157 0.5826 -0.0904 9 8 6.8605 0.6289 0.7785 10 7 6.1646 -0.2613 -1.1307 11 6 7.3843 -1.0633 -1.2546 12 1 7.5974 -1.5455 -0.3005 13 6 8.5536 -0.1517 -1.6335 14 6 8.2928 0.4350 -3.0329 15 1 8.9823 1.2381 -3.2931 16 6 8.3420 -0.7595 -4.0261 17 6 6.9955 -1.4550 -3.6928 18 1 6.6794 -2.1473 -4.4731 19 6 7.1780 -2.1365 -2.3252 20 7 6.0448 -0.3385 -3.5097 21 6 4.6906 -0.3980 -3.7036 22 1 4.0352 0.2478 -3.1382 23 6 4.1602 -1.2886 -4.6269 24 7 2.8884 -1.6220 -4.5643 25 14 5.2513 -2.0137 -5.9585 26 1 5.7584 -3.3376 -5.5163 27 1 4.4655 -2.1768 -7.2080 28 1 6.3973 -1.1034 -6.2096 29 6 6.8086 0.8695 -3.0762 30 6 3.5450 -0.7094 0.0050 31 7 2.2953 -1.0852 0.0066 32 1 -0.3633 0.0058 1.0276 33 1 -0.3633 0.8869 -0.5189 34 1 -0.3633 -0.8930 -0.5088 35 1 1.9750 2.1201 -0.0004 36 1 3.9467 3.1148 -1.1041 37 1 5.7112 2.9539 -1.2734 38 1 4.6290 1.8259 -2.1246 39 1 4.8784 1.6241 2.1402 40 1 5.7557 2.9101 1.2769 41 1 3.9773 2.9343 1.3406 42 1 5.4642 -0.3377 -1.7974 43 1 8.6359 0.6574 -0.9078 44 1 9.4782 -0.7288 -1.6436 45 1 8.3624 -0.4133 -5.0595 46 1 9.1879 -1.4139 -3.8152 47 1 8.0489 -2.7911 -2.3576 48 1 6.2895 -2.7217 -2.0882 49 1 2.5177 -2.2440 -5.2096 50 1 6.4873 1.1962 -2.0871 51 1 6.6779 1.6772 -3.7963 52 1 4.4005 -1.3686 0.0087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047095248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:53 Heat of formation + Delta-G solvation = 97.099649 kcal Electronic energy + Delta-G solvation = -34816.766312 eV Core-core repulsion = 30819.848751 eV Total energy + Delta-G solvation = -3996.917561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.42355 -42.30968 -40.05878 -36.84690 -35.50613 -34.87853 -33.08105 -32.73986 -32.30281 -31.38970 -29.88783 -28.43980 -27.76457 -27.18181 -24.79703 -24.63568 -23.38932 -22.51353 -21.84896 -21.07928 -20.79709 -20.45306 -19.07521 -18.45279 -17.84481 -17.01950 -16.86014 -16.39253 -16.18780 -15.80037 -15.54430 -15.18576 -14.98051 -14.86793 -14.72220 -14.41164 -14.31362 -14.10865 -13.90336 -13.79368 -13.71713 -13.42981 -13.31575 -13.30091 -13.21967 -13.08357 -12.92381 -12.86240 -12.82046 -12.69818 -12.52944 -12.32302 -11.98210 -11.68144 -11.48480 -11.22904 -10.98562 -10.92468 -10.80298 -10.59134 -10.48134 -9.45424 -9.17350 -8.87806 -8.16974 -5.54054 1.12186 1.17816 1.25253 1.37487 1.45734 2.06697 2.16979 2.24621 2.37886 3.03760 3.19981 3.37936 3.61623 3.66515 3.71161 3.80104 3.83892 3.87755 3.91691 4.16162 4.24673 4.30094 4.38318 4.43551 4.44523 4.49944 4.59605 4.62526 4.66276 4.70766 4.72023 4.79339 4.90618 4.94372 4.97162 4.99754 5.03702 5.06856 5.10966 5.11161 5.16201 5.17826 5.32459 5.34606 5.37448 5.41518 5.64658 5.74682 5.95503 6.11096 6.23400 6.68869 6.73626 7.21894 7.22267 7.49663 8.08934 8.99916 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.006559 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.999834 B = 4268.162151 C = 6032.320789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.031 4.031 3 C -0.041 4.041 4 N -0.437 5.437 5 C 0.143 3.857 6 C -0.162 4.162 7 C -0.131 4.131 8 C 0.496 3.504 9 O -0.561 6.561 10 N -0.700 5.700 11 C 0.151 3.849 12 H 0.072 0.928 13 C -0.113 4.113 14 C -0.093 4.093 15 H 0.112 0.888 16 C -0.122 4.122 17 C 0.124 3.876 18 H 0.045 0.955 19 C -0.135 4.135 20 N -0.611 5.611 21 C -0.239 4.239 22 H 0.063 0.937 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.939 3.061 26 H -0.283 1.283 27 H -0.320 1.320 28 H -0.255 1.255 29 C 0.090 3.910 30 C 0.175 3.825 31 N -0.520 5.520 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.207 0.793 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.431 0.569 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.042 0.958 49 H 0.259 0.741 50 H 0.079 0.921 51 H 0.018 0.982 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 8.647 7.695 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.160 4.160 3 C -0.174 4.174 4 N -0.122 5.122 5 C 0.056 3.944 6 C -0.219 4.219 7 C -0.189 4.189 8 C 0.280 3.720 9 O -0.441 6.441 10 N -0.366 5.366 11 C 0.047 3.953 12 H 0.090 0.910 13 C -0.151 4.151 14 C -0.112 4.112 15 H 0.130 0.870 16 C -0.160 4.160 17 C 0.019 3.981 18 H 0.063 0.937 19 C -0.174 4.174 20 N -0.339 5.339 21 C -0.367 4.367 22 H 0.081 0.919 23 C -0.215 4.215 24 N -0.579 5.579 25 Si 0.771 3.229 26 H -0.211 1.211 27 H -0.250 1.250 28 H -0.179 1.179 29 C -0.033 4.033 30 C -0.108 4.108 31 N -0.240 5.240 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.224 0.776 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.287 0.713 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.096 0.904 51 H 0.036 0.964 52 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.724 7.867 8.154 14.300 hybrid contribution -0.189 -0.334 -1.554 1.601 sum 8.536 7.533 6.599 13.159 Atomic orbital electron populations 1.20021 0.86183 1.02721 1.02639 1.21285 0.97904 0.88592 1.08190 1.22746 0.81958 1.01331 1.11338 1.45527 1.06539 1.06466 1.53672 1.21291 0.80776 0.91220 1.01120 1.22404 1.05369 0.99063 0.95105 1.21952 1.04882 0.99329 0.92729 1.20447 0.87708 0.81856 0.81998 1.90644 1.44761 1.68924 1.39761 1.48211 1.22874 1.39247 1.26298 1.20891 0.84947 0.91534 0.97961 0.91043 1.22041 0.97671 0.99404 0.95966 1.22565 0.95758 0.97796 0.95038 0.87026 1.23048 0.96368 0.97666 0.98920 1.22051 0.90665 0.90555 0.94812 0.93719 1.22389 1.02138 0.97351 0.95540 1.45793 1.02286 1.06537 1.79317 1.18289 0.80317 1.21146 1.16996 0.91904 1.25806 0.96066 1.00074 0.99534 1.69964 1.14636 1.35970 1.37377 0.85930 0.78926 0.78508 0.79528 1.21115 1.24963 1.17892 1.23135 0.91549 0.89084 0.99531 1.24604 0.96569 0.83004 1.06592 1.70090 1.01231 1.32217 1.20427 0.90054 0.89502 0.93159 0.77617 0.88408 0.88601 0.92366 0.92715 0.88862 0.88821 0.71295 0.91606 0.88368 0.92290 0.87731 0.87763 0.93952 0.93207 0.90358 0.96406 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.42 71.24 0.74 -0.94 16 2 C -0.03 -1.14 7.09 41.39 0.29 -0.85 16 3 C -0.04 -1.30 10.62 83.09 0.88 -0.42 16 4 N -0.44 -14.78 2.61 -488.72 -1.27 -16.06 16 5 C 0.14 4.14 1.04 2.86 0.00 4.14 16 6 C -0.16 -4.27 7.09 71.98 0.51 -3.76 16 7 C -0.13 -3.01 7.87 71.98 0.57 -2.44 16 8 C 0.50 16.39 4.45 87.66 0.39 16.78 16 9 O -0.56 -19.83 14.95 -3.04 -0.05 -19.88 16 10 N -0.70 -24.21 1.46 -442.50 -0.65 -24.85 16 11 C 0.15 4.64 2.71 45.00 0.12 4.76 16 12 H 0.07 2.18 7.94 -2.39 -0.02 2.16 16 13 C -0.11 -2.82 5.16 30.93 0.16 -2.67 16 14 C -0.09 -2.45 4.27 -9.05 -0.04 -2.49 16 15 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.12 -3.43 6.19 32.17 0.20 -3.23 16 17 C 0.12 4.58 2.96 45.79 0.14 4.72 16 18 H 0.05 1.88 2.95 -2.39 -0.01 1.88 16 19 C -0.13 -4.37 5.43 30.89 0.17 -4.20 16 20 N -0.61 -25.17 1.46 -658.63 -0.96 -26.13 16 21 C -0.24 -12.22 8.68 84.03 0.73 -11.49 16 22 H 0.06 3.54 6.36 -2.91 -0.02 3.52 16 23 C -0.02 -0.95 5.45 84.86 0.46 -0.49 16 24 N -0.94 -56.89 13.97 21.65 0.30 -56.59 16 25 Si 0.94 44.98 24.66 68.60 1.69 46.67 16 26 H -0.28 -13.21 6.85 99.48 0.68 -12.53 16 27 H -0.32 -16.03 7.11 99.48 0.71 -15.33 16 28 H -0.25 -11.37 6.80 99.48 0.68 -10.70 16 29 C 0.09 3.05 5.04 86.41 0.44 3.48 16 30 C 0.17 7.17 10.85 180.26 1.95 9.12 16 31 N -0.52 -22.89 11.25 -188.31 -2.12 -25.00 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.21 4.56 8.06 -2.91 -0.02 4.54 16 36 H 0.10 2.07 8.06 -2.39 -0.02 2.05 16 37 H 0.10 2.16 7.81 -2.39 -0.02 2.14 16 38 H 0.06 2.00 4.89 -2.39 -0.01 1.99 16 39 H 0.05 1.43 8.11 -2.39 -0.02 1.41 16 40 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.09 1.66 8.01 -2.39 -0.02 1.64 16 42 H 0.43 17.09 2.88 -92.92 -0.27 16.83 16 43 H 0.07 1.75 7.07 -2.39 -0.02 1.74 16 44 H 0.10 1.92 7.98 -2.39 -0.02 1.90 16 45 H 0.06 1.76 8.06 -2.39 -0.02 1.74 16 46 H 0.10 2.25 7.75 -2.39 -0.02 2.23 16 47 H 0.10 2.62 8.00 -2.38 -0.02 2.60 16 48 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.08 2.57 1.79 -7.90 -0.01 2.56 16 51 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.18 7.57 6.69 -2.91 -0.02 7.55 16 Total: -1.00 -70.61 374.09 5.27 -65.34 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: 0.61 Total: 46.48 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 7.72 Total: 10.02 kcal Atomic # 7 Polarization: -143.93 SS G_CDS: -4.70 Total: -148.63 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.05 Total: -19.88 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.69 Total: 46.67 kcal Total: -70.61 5.27 -65.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047095248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.436 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds