Wall clock time and date at job start Wed Apr 1 2020 03:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34260 * 126.29025 * 2 1 4 4 H 0.96996 * 125.75482 * 0.03234 * 3 2 1 5 5 N 1.39934 * 108.49063 * 180.02562 * 3 2 1 6 6 C 1.30443 * 108.90019 * 0.02562 * 5 3 2 7 7 C 1.50696 * 125.99332 * 180.02562 * 6 5 3 8 8 C 1.52996 * 109.47414 * 67.30252 * 7 6 5 9 9 C 1.53004 * 109.46977 * 307.30538 * 7 6 5 10 10 C 1.38043 * 126.29163 * 180.34620 * 2 1 3 11 11 C 1.47423 * 126.41885 * 359.96547 * 10 2 1 12 12 O 1.21603 * 120.00678 * 255.27424 * 11 10 2 13 13 N 1.34779 * 120.00081 * 75.26533 * 11 10 2 14 14 C 1.46498 * 120.00364 * 184.65854 * 13 11 10 15 15 H 1.09003 * 109.32293 * 46.55888 * 14 13 11 16 16 C 1.53024 * 109.32891 * 287.09235 * 14 13 11 17 17 C 1.53980 * 108.82799 * 295.14235 * 16 14 13 18 18 H 1.08990 * 113.67127 * 168.56101 * 17 16 14 19 19 C 1.55426 * 106.41036 * 293.82229 * 17 16 14 20 20 C 1.55176 * 100.35604 * 73.37397 * 19 17 16 21 21 H 1.09001 * 113.05027 * 162.98337 * 20 19 17 22 22 C 1.52983 * 109.32426 * 166.19699 * 14 13 11 23 23 N 1.47791 * 104.25078 * 40.54774 * 20 19 17 24 24 C 1.36936 * 125.85518 * 153.53792 * 23 20 19 25 25 H 1.08003 * 120.00032 * 21.63707 * 24 23 20 26 26 C 1.38811 * 120.00166 * 201.63430 * 24 23 20 27 27 N 1.31619 * 119.99919 * 12.12498 * 26 24 23 28 28 Si 1.86794 * 120.00232 * 192.12542 * 26 24 23 29 29 H 1.48497 * 109.47359 * 64.95754 * 28 26 24 30 30 H 1.48496 * 109.47483 * 184.95985 * 28 26 24 31 31 H 1.48503 * 109.47112 * 304.95664 * 28 26 24 32 32 C 1.47080 * 108.28839 * 333.53759 * 23 20 19 33 33 H 1.08995 * 109.47212 * 95.13848 * 1 2 3 34 34 H 1.08999 * 109.47003 * 215.14314 * 1 2 3 35 35 H 1.09002 * 109.46809 * 335.13720 * 1 2 3 36 36 H 1.08998 * 109.47841 * 187.30568 * 7 6 5 37 37 H 1.09007 * 109.47193 * 300.00410 * 8 7 6 38 38 H 1.08994 * 109.47546 * 60.00314 * 8 7 6 39 39 H 1.09003 * 109.47491 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.47551 * 175.90055 * 9 7 6 41 41 H 1.09010 * 109.46746 * 295.89968 * 9 7 6 42 42 H 1.08997 * 109.46988 * 55.89655 * 9 7 6 43 43 H 0.97004 * 119.99579 * 4.66207 * 13 11 10 44 44 H 1.09002 * 109.58195 * 54.94252 * 16 14 13 45 45 H 1.08998 * 109.58201 * 175.33680 * 16 14 13 46 46 H 1.09003 * 111.23806 * 315.59970 * 19 17 16 47 47 H 1.09001 * 111.23757 * 191.14963 * 19 17 16 48 48 H 1.09003 * 109.53172 * 185.06605 * 22 14 13 49 49 H 1.09002 * 109.53996 * 305.21752 * 22 14 13 50 50 H 0.97001 * 120.00105 * 180.57314 * 27 26 24 51 51 H 1.09004 * 109.97454 * 120.45621 * 32 23 20 52 52 H 1.09000 * 109.98151 * 241.74058 * 32 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6340 0.6544 -0.0006 6 6 3.6591 -0.6498 -0.0015 7 6 4.8951 -1.5118 -0.0018 8 6 5.6316 -1.3480 1.3292 9 6 5.8138 -1.0856 -1.1488 10 6 2.3241 -1.1126 -0.0067 11 6 1.8859 -2.5202 -0.0145 12 8 1.9613 -3.1862 1.0001 13 7 1.4017 -3.0690 -1.1462 14 6 0.8717 -4.4347 -1.1296 15 1 0.2079 -4.5536 -0.2733 16 6 2.0308 -5.4264 -1.0087 17 6 2.9019 -5.3294 -2.2747 18 1 3.8541 -5.8532 -2.1919 19 6 2.0238 -5.8385 -3.4519 20 6 1.0527 -4.6391 -3.6145 21 1 0.5295 -4.6402 -4.5707 22 6 0.0865 -4.6887 -2.4178 23 7 1.9123 -3.4492 -3.4428 24 6 1.6793 -2.2082 -3.9728 25 1 0.6793 -1.9257 -4.2671 26 6 2.7285 -1.3133 -4.1318 27 7 3.9714 -1.7266 -4.0024 28 14 2.3764 0.4776 -4.5293 29 1 1.6613 1.1063 -3.3897 30 1 3.6560 1.1930 -4.7660 31 1 1.5320 0.5573 -5.7482 32 6 3.0608 -3.8264 -2.6050 33 1 -0.3633 -0.0920 -1.0235 34 1 -0.3633 -0.8403 0.5915 35 1 -0.3633 0.9325 0.4321 36 1 4.6102 -2.5557 -0.1333 37 1 5.9166 -0.3041 1.4607 38 1 4.9773 -1.6516 2.1463 39 1 6.5259 -1.9712 1.3288 40 1 6.7396 -1.6594 -1.1052 41 1 5.3161 -1.2707 -2.1008 42 1 6.0400 -0.0233 -1.0575 43 1 1.4041 -2.5597 -1.9718 44 1 2.6313 -5.1813 -0.1326 45 1 1.6373 -6.4383 -0.9127 46 1 1.4868 -6.7471 -3.1797 47 1 2.6194 -5.9891 -4.3523 48 1 -0.3843 -5.6707 -2.3700 49 1 -0.6798 -3.9225 -2.5348 50 1 4.7042 -1.0995 -4.1053 51 1 3.9899 -3.6613 -3.1506 52 1 3.0594 -3.2410 -1.6855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047178282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:57 Heat of formation + Delta-G solvation = 94.919436 kcal Electronic energy + Delta-G solvation = -34906.152157 eV Core-core repulsion = 30909.140054 eV Total energy + Delta-G solvation = -3997.012102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.14405 -40.35059 -37.53635 -35.25314 -33.63126 -33.02198 -31.74582 -30.81290 -30.62040 -29.94250 -27.89813 -26.84384 -26.52728 -25.21593 -23.17061 -22.77114 -22.57325 -20.92562 -19.63510 -18.95655 -18.71998 -18.56993 -17.36679 -16.80138 -16.06931 -15.17598 -14.98941 -14.60616 -14.57736 -14.29303 -13.96172 -13.72857 -13.58644 -13.01089 -12.95081 -12.86648 -12.53502 -12.31216 -12.27491 -12.22856 -12.13947 -11.81762 -11.67047 -11.64196 -11.61197 -11.44904 -10.98116 -10.96377 -10.84740 -10.63289 -10.56802 -10.47306 -10.17975 -10.06416 -9.87132 -9.70788 -9.57436 -9.35071 -9.01376 -8.88198 -8.73113 -8.05936 -7.47207 -6.78776 -5.80867 -3.35782 2.15961 2.99603 3.12497 3.26030 3.31210 3.35821 3.50081 4.30985 4.36560 4.81896 5.08028 5.18631 5.22741 5.28407 5.34101 5.44550 5.50675 5.63243 5.65139 5.71363 5.71668 5.87195 5.91692 5.96276 5.97621 6.01651 6.09703 6.14308 6.17467 6.21500 6.25393 6.32466 6.33714 6.35780 6.46002 6.48619 6.52750 6.66059 6.75835 6.77478 6.86144 6.94135 6.98261 7.01930 7.12390 7.45655 7.53880 7.58444 7.64491 7.81909 8.08705 8.20997 8.74736 9.03451 9.31913 9.64056 10.35396 11.15772 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009475 B = 0.006864 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.520955 B = 4078.557184 C = 4781.751044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.117 3.883 3 N -0.469 5.469 4 H 0.434 0.566 5 N -0.298 5.298 6 C 0.141 3.859 7 C -0.010 4.010 8 C -0.139 4.139 9 C -0.154 4.154 10 C -0.258 4.258 11 C 0.581 3.419 12 O -0.571 6.571 13 N -0.687 5.687 14 C 0.161 3.839 15 H 0.060 0.940 16 C -0.123 4.123 17 C -0.114 4.114 18 H 0.075 0.925 19 C -0.126 4.126 20 C 0.146 3.854 21 H 0.066 0.934 22 C -0.139 4.139 23 N -0.582 5.582 24 C -0.265 4.265 25 H 0.074 0.926 26 C 0.021 3.979 27 N -0.880 5.880 28 Si 0.896 3.104 29 H -0.285 1.285 30 H -0.289 1.289 31 H -0.283 1.283 32 C 0.122 3.878 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.438 0.562 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.256 0.744 51 H 0.069 0.931 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -0.819 5.780 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.014 4.014 3 N -0.175 5.175 4 H 0.278 0.722 5 N -0.120 5.120 6 C -0.026 4.026 7 C -0.031 4.031 8 C -0.197 4.197 9 C -0.211 4.211 10 C -0.272 4.272 11 C 0.365 3.635 12 O -0.451 6.451 13 N -0.355 5.355 14 C 0.055 3.945 15 H 0.078 0.922 16 C -0.162 4.162 17 C -0.133 4.133 18 H 0.093 0.907 19 C -0.165 4.165 20 C 0.038 3.962 21 H 0.084 0.916 22 C -0.180 4.180 23 N -0.309 5.309 24 C -0.393 4.393 25 H 0.091 0.909 26 C -0.181 4.181 27 N -0.523 5.523 28 Si 0.726 3.274 29 H -0.212 1.212 30 H -0.215 1.215 31 H -0.209 1.209 32 C -0.002 4.002 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.296 0.704 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.067 0.933 51 H 0.087 0.913 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.447 0.013 6.314 7.194 hybrid contribution -0.815 1.037 -0.715 1.501 sum -4.262 1.050 5.599 7.115 Atomic orbital electron populations 1.20500 0.87225 1.03440 1.04152 1.21239 0.94116 0.87068 0.98987 1.45850 1.04323 1.07766 1.59571 0.72233 1.76946 0.95322 1.12847 1.26863 1.22118 0.94126 0.90797 0.95577 1.19567 0.89894 0.97407 0.96209 1.21805 0.99751 1.01696 0.96457 1.21993 0.98634 1.00477 1.00038 1.19902 0.92850 0.93681 1.20811 1.17373 0.77560 0.85040 0.83488 1.90662 1.56981 1.63181 1.34324 1.47928 1.58689 1.15213 1.13651 1.20593 0.94212 0.82837 0.96868 0.92214 1.22083 0.97627 0.97897 0.98589 1.22705 0.97021 0.99507 0.94047 0.90680 1.22955 0.98191 0.96963 0.98343 1.21686 0.91842 0.87880 0.94767 0.91631 1.22503 0.98604 1.00494 0.96366 1.44894 1.24532 1.05370 1.56068 1.18865 0.93178 0.88261 1.38997 0.90862 1.24952 0.95135 0.98325 0.99667 1.69886 0.97505 1.33256 1.51673 0.86466 0.77215 0.85542 0.78224 1.21173 1.21481 1.20937 1.22283 0.92659 0.89531 0.95708 0.89354 0.89652 0.91121 0.89607 0.92618 0.92685 0.92293 0.92976 0.88811 0.93168 0.70424 0.91240 0.92556 0.92378 0.92100 0.91902 0.92212 0.93326 0.91309 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 10.21 36.01 0.37 -0.89 16 2 C 0.12 2.04 7.29 -81.60 -0.60 1.45 16 3 N -0.47 -7.80 7.29 33.86 0.25 -7.56 16 4 H 0.43 5.54 8.96 -182.73 -1.64 3.90 16 5 N -0.30 -5.77 12.51 33.89 0.42 -5.34 16 6 C 0.14 2.85 5.81 -82.02 -0.48 2.38 16 7 C -0.01 -0.19 3.30 -91.77 -0.30 -0.50 16 8 C -0.14 -2.21 9.17 37.16 0.34 -1.87 16 9 C -0.15 -2.86 9.15 37.16 0.34 -2.52 16 10 C -0.26 -5.23 5.88 -105.07 -0.62 -5.85 16 11 C 0.58 12.15 5.28 -12.52 -0.07 12.09 16 12 O -0.57 -12.95 15.89 5.27 0.08 -12.87 16 13 N -0.69 -13.73 2.74 -54.88 -0.15 -13.88 16 14 C 0.16 2.88 2.70 -67.93 -0.18 2.69 16 15 H 0.06 1.06 8.00 -51.93 -0.42 0.64 16 16 C -0.12 -2.16 5.18 -26.21 -0.14 -2.30 16 17 C -0.11 -2.10 4.33 -87.92 -0.38 -2.48 16 18 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 19 C -0.13 -2.16 6.18 -24.29 -0.15 -2.31 16 20 C 0.15 2.71 4.30 -65.61 -0.28 2.43 16 21 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 22 C -0.14 -2.29 5.44 -26.28 -0.14 -2.43 16 23 N -0.58 -12.84 1.74 -161.37 -0.28 -13.13 16 24 C -0.27 -6.43 8.36 -15.06 -0.13 -6.56 16 25 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 26 C 0.02 0.52 5.36 -17.43 -0.09 0.43 16 27 N -0.88 -22.80 9.63 55.49 0.53 -22.26 16 28 Si 0.90 20.64 29.57 -169.99 -5.03 15.61 16 29 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 32 C 0.12 2.69 4.60 -2.83 -0.01 2.68 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.74 7.21 -51.93 -0.37 1.36 16 37 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.03 6.12 -51.92 -0.32 1.71 16 42 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.44 9.44 3.68 -41.56 -0.15 9.29 16 44 H 0.07 1.34 6.92 -51.93 -0.36 0.98 16 45 H 0.06 0.86 7.97 -51.93 -0.41 0.44 16 46 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 0.87 8.00 -51.93 -0.42 0.46 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.26 6.62 7.67 -40.82 -0.31 6.31 16 51 H 0.07 1.75 6.27 -51.93 -0.33 1.43 16 52 H 0.06 1.39 3.76 -58.40 -0.22 1.18 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -28.99 391.00 -10.42 -39.41 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -9.62 Total: 17.69 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.52 Total: -3.56 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.77 Total: -62.17 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.99 -10.42 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047178282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.330 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds