Wall clock time and date at job start Wed Apr 1 2020 03:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34260 * 126.29025 * 2 1 4 4 H 0.96996 * 125.75482 * 0.03234 * 3 2 1 5 5 N 1.39934 * 108.49063 * 180.02562 * 3 2 1 6 6 C 1.30443 * 108.90019 * 0.02562 * 5 3 2 7 7 C 1.50696 * 125.99332 * 180.02562 * 6 5 3 8 8 C 1.52996 * 109.47414 * 67.30252 * 7 6 5 9 9 C 1.53004 * 109.46977 * 307.30538 * 7 6 5 10 10 C 1.38043 * 126.29163 * 180.34620 * 2 1 3 11 11 C 1.47423 * 126.41885 * 359.96547 * 10 2 1 12 12 O 1.21603 * 120.00678 * 255.27424 * 11 10 2 13 13 N 1.34779 * 120.00081 * 75.26533 * 11 10 2 14 14 C 1.46498 * 120.00364 * 184.65854 * 13 11 10 15 15 H 1.09003 * 109.32293 * 46.55888 * 14 13 11 16 16 C 1.53024 * 109.32891 * 287.09235 * 14 13 11 17 17 C 1.53980 * 108.82799 * 295.14235 * 16 14 13 18 18 H 1.08990 * 113.67127 * 168.56101 * 17 16 14 19 19 C 1.55426 * 106.41036 * 293.82229 * 17 16 14 20 20 C 1.55176 * 100.35604 * 73.37397 * 19 17 16 21 21 H 1.09001 * 113.05027 * 162.98337 * 20 19 17 22 22 C 1.52983 * 109.32426 * 166.19699 * 14 13 11 23 23 N 1.47791 * 104.25078 * 40.54774 * 20 19 17 24 24 C 1.36936 * 125.85518 * 153.53792 * 23 20 19 25 25 H 1.08003 * 120.00032 * 21.63707 * 24 23 20 26 26 C 1.38811 * 120.00166 * 201.63430 * 24 23 20 27 27 N 1.31619 * 119.99919 * 12.12498 * 26 24 23 28 28 Si 1.86794 * 120.00232 * 192.12542 * 26 24 23 29 29 H 1.48497 * 109.47359 * 64.95754 * 28 26 24 30 30 H 1.48496 * 109.47483 * 184.95985 * 28 26 24 31 31 H 1.48503 * 109.47112 * 304.95664 * 28 26 24 32 32 C 1.47080 * 108.28839 * 333.53759 * 23 20 19 33 33 H 1.08995 * 109.47212 * 95.13848 * 1 2 3 34 34 H 1.08999 * 109.47003 * 215.14314 * 1 2 3 35 35 H 1.09002 * 109.46809 * 335.13720 * 1 2 3 36 36 H 1.08998 * 109.47841 * 187.30568 * 7 6 5 37 37 H 1.09007 * 109.47193 * 300.00410 * 8 7 6 38 38 H 1.08994 * 109.47546 * 60.00314 * 8 7 6 39 39 H 1.09003 * 109.47491 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.47551 * 175.90055 * 9 7 6 41 41 H 1.09010 * 109.46746 * 295.89968 * 9 7 6 42 42 H 1.08997 * 109.46988 * 55.89655 * 9 7 6 43 43 H 0.97004 * 119.99579 * 4.66207 * 13 11 10 44 44 H 1.09002 * 109.58195 * 54.94252 * 16 14 13 45 45 H 1.08998 * 109.58201 * 175.33680 * 16 14 13 46 46 H 1.09003 * 111.23806 * 315.59970 * 19 17 16 47 47 H 1.09001 * 111.23757 * 191.14963 * 19 17 16 48 48 H 1.09003 * 109.53172 * 185.06605 * 22 14 13 49 49 H 1.09002 * 109.53996 * 305.21752 * 22 14 13 50 50 H 0.97001 * 120.00105 * 180.57314 * 27 26 24 51 51 H 1.09004 * 109.97454 * 120.45621 * 32 23 20 52 52 H 1.09000 * 109.98151 * 241.74058 * 32 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6340 0.6544 -0.0006 6 6 3.6591 -0.6498 -0.0015 7 6 4.8951 -1.5118 -0.0018 8 6 5.6316 -1.3480 1.3292 9 6 5.8138 -1.0856 -1.1488 10 6 2.3241 -1.1126 -0.0067 11 6 1.8859 -2.5202 -0.0145 12 8 1.9613 -3.1862 1.0001 13 7 1.4017 -3.0690 -1.1462 14 6 0.8717 -4.4347 -1.1296 15 1 0.2079 -4.5536 -0.2733 16 6 2.0308 -5.4264 -1.0087 17 6 2.9019 -5.3294 -2.2747 18 1 3.8541 -5.8532 -2.1919 19 6 2.0238 -5.8385 -3.4519 20 6 1.0527 -4.6391 -3.6145 21 1 0.5295 -4.6402 -4.5707 22 6 0.0865 -4.6887 -2.4178 23 7 1.9123 -3.4492 -3.4428 24 6 1.6793 -2.2082 -3.9728 25 1 0.6793 -1.9257 -4.2671 26 6 2.7285 -1.3133 -4.1318 27 7 3.9714 -1.7266 -4.0024 28 14 2.3764 0.4776 -4.5293 29 1 1.6613 1.1063 -3.3897 30 1 3.6560 1.1930 -4.7660 31 1 1.5320 0.5573 -5.7482 32 6 3.0608 -3.8264 -2.6050 33 1 -0.3633 -0.0920 -1.0235 34 1 -0.3633 -0.8403 0.5915 35 1 -0.3633 0.9325 0.4321 36 1 4.6102 -2.5557 -0.1333 37 1 5.9166 -0.3041 1.4607 38 1 4.9773 -1.6516 2.1463 39 1 6.5259 -1.9712 1.3288 40 1 6.7396 -1.6594 -1.1052 41 1 5.3161 -1.2707 -2.1008 42 1 6.0400 -0.0233 -1.0575 43 1 1.4041 -2.5597 -1.9718 44 1 2.6313 -5.1813 -0.1326 45 1 1.6373 -6.4383 -0.9127 46 1 1.4868 -6.7471 -3.1797 47 1 2.6194 -5.9891 -4.3523 48 1 -0.3843 -5.6707 -2.3700 49 1 -0.6798 -3.9225 -2.5348 50 1 4.7042 -1.0995 -4.1053 51 1 3.9899 -3.6613 -3.1506 52 1 3.0594 -3.2410 -1.6855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047178282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:56 Heat of formation + Delta-G solvation = 79.509361 kcal Electronic energy + Delta-G solvation = -34906.820388 eV Core-core repulsion = 30909.140054 eV Total energy + Delta-G solvation = -3997.680333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.60286 -41.83631 -39.13102 -36.68676 -35.37153 -34.58823 -33.06468 -32.46613 -32.08474 -31.45195 -29.40544 -28.17902 -27.92535 -26.92816 -24.79933 -24.21548 -24.01235 -22.37884 -21.27079 -20.45731 -20.22302 -20.02450 -18.91969 -18.39854 -17.61570 -16.81031 -16.47063 -16.30503 -16.05057 -15.70915 -15.45785 -15.30018 -15.15565 -14.52360 -14.32898 -14.17542 -13.93980 -13.90504 -13.75481 -13.52655 -13.36695 -13.27951 -13.19936 -13.08449 -13.02125 -12.97617 -12.75572 -12.60998 -12.38826 -12.16665 -12.04925 -11.98850 -11.92807 -11.65141 -11.50841 -11.28603 -11.02267 -10.87507 -10.64150 -10.50814 -10.29392 -9.50936 -9.05649 -8.59782 -7.69336 -5.24416 0.76845 1.40153 1.41912 1.47895 1.48940 1.81767 1.95069 2.47590 2.86257 3.36437 3.49619 3.69535 3.75180 3.89350 3.94967 4.06073 4.14446 4.18896 4.28595 4.29961 4.44260 4.48812 4.52435 4.57131 4.59271 4.66319 4.73955 4.78196 4.86306 4.90819 4.93572 4.95007 4.95682 4.98632 5.03793 5.11729 5.16658 5.20891 5.31067 5.33117 5.40409 5.46816 5.52096 5.55515 5.58829 5.68629 5.84181 5.99123 6.04188 6.34564 6.36031 6.65437 7.08688 7.21377 7.70536 7.82738 8.52970 9.23711 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009475 B = 0.006864 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.520955 B = 4078.557184 C = 4781.751044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.127 3.873 3 N -0.458 5.458 4 H 0.451 0.549 5 N -0.317 5.317 6 C 0.126 3.874 7 C -0.010 4.010 8 C -0.129 4.129 9 C -0.144 4.144 10 C -0.300 4.300 11 C 0.583 3.417 12 O -0.597 6.597 13 N -0.686 5.686 14 C 0.151 3.849 15 H 0.066 0.934 16 C -0.114 4.114 17 C -0.112 4.112 18 H 0.080 0.920 19 C -0.114 4.114 20 C 0.136 3.864 21 H 0.068 0.932 22 C -0.127 4.127 23 N -0.592 5.592 24 C -0.259 4.259 25 H 0.077 0.923 26 C -0.019 4.019 27 N -0.897 5.897 28 Si 0.934 3.066 29 H -0.279 1.279 30 H -0.308 1.308 31 H -0.278 1.278 32 C 0.130 3.870 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.431 0.569 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.049 0.951 48 H 0.101 0.899 49 H 0.059 0.941 50 H 0.245 0.755 51 H 0.026 0.974 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -1.578 6.241 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.006 4.006 3 N -0.165 5.165 4 H 0.298 0.702 5 N -0.139 5.139 6 C -0.041 4.041 7 C -0.030 4.030 8 C -0.187 4.187 9 C -0.201 4.201 10 C -0.315 4.315 11 C 0.369 3.631 12 O -0.480 6.480 13 N -0.351 5.351 14 C 0.046 3.954 15 H 0.084 0.916 16 C -0.153 4.153 17 C -0.131 4.131 18 H 0.098 0.902 19 C -0.152 4.152 20 C 0.030 3.970 21 H 0.086 0.914 22 C -0.166 4.166 23 N -0.319 5.319 24 C -0.388 4.388 25 H 0.094 0.906 26 C -0.218 4.218 27 N -0.542 5.542 28 Si 0.765 3.235 29 H -0.205 1.205 30 H -0.235 1.235 31 H -0.204 1.204 32 C 0.005 3.995 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.287 0.713 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.068 0.932 48 H 0.119 0.881 49 H 0.078 0.922 50 H 0.055 0.945 51 H 0.044 0.956 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.600 -0.751 6.765 8.814 hybrid contribution -0.191 1.273 -0.884 1.562 sum -5.790 0.522 5.881 8.269 Atomic orbital electron populations 1.20658 0.84187 1.05667 1.04621 1.21804 0.95854 0.86290 0.96640 1.45883 1.03509 1.08687 1.58467 0.70189 1.76855 0.96887 1.12504 1.27674 1.22324 0.94652 0.91261 0.95861 1.19531 0.90041 0.95851 0.97593 1.21723 1.00045 1.02464 0.94425 1.21861 0.99083 1.00731 0.98469 1.20133 0.93613 0.94305 1.23448 1.17458 0.77106 0.85292 0.83271 1.90624 1.58273 1.63938 1.35169 1.47955 1.58251 1.16039 1.12898 1.20852 0.94571 0.81867 0.98069 0.91600 1.22007 0.96954 0.99586 0.96732 1.22673 0.98044 0.96973 0.95445 0.90213 1.22916 0.97457 0.97742 0.97083 1.21941 0.92155 0.86948 0.95986 0.91378 1.22401 0.97624 1.02709 0.93912 1.44996 1.24982 1.05960 1.55918 1.19043 0.92987 0.89371 1.37395 0.90560 1.25390 0.95241 1.00388 1.00776 1.70054 0.97737 1.33177 1.53233 0.85836 0.76081 0.83296 0.78327 1.20503 1.23550 1.20357 1.22060 0.91035 0.92017 0.94371 0.89131 0.89590 0.87184 0.92039 0.92087 0.93319 0.90137 0.91110 0.91995 0.93126 0.71250 0.93640 0.89160 0.88547 0.93208 0.88058 0.92184 0.94505 0.95567 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.27 10.21 71.24 0.73 -1.55 16 2 C 0.13 4.31 7.29 42.14 0.31 4.62 16 3 N -0.46 -14.80 7.29 -46.79 -0.34 -15.14 16 4 H 0.45 10.74 8.96 -213.43 -1.91 8.83 16 5 N -0.32 -12.33 12.51 -46.68 -0.58 -12.92 16 6 C 0.13 5.21 5.81 43.52 0.25 5.46 16 7 C -0.01 -0.37 3.30 -11.54 -0.04 -0.41 16 8 C -0.13 -4.10 9.17 71.98 0.66 -3.44 16 9 C -0.14 -5.57 9.15 71.98 0.66 -4.91 16 10 C -0.30 -12.33 5.88 -20.15 -0.12 -12.45 16 11 C 0.58 24.69 5.28 86.66 0.46 25.15 16 12 O -0.60 -27.49 15.89 -4.04 -0.06 -27.56 16 13 N -0.69 -27.22 2.74 -445.79 -1.22 -28.44 16 14 C 0.15 5.12 2.70 44.99 0.12 5.24 16 15 H 0.07 2.17 8.00 -2.39 -0.02 2.16 16 16 C -0.11 -3.78 5.18 30.93 0.16 -3.62 16 17 C -0.11 -4.02 4.33 -9.05 -0.04 -4.06 16 18 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 19 C -0.11 -3.58 6.18 32.17 0.20 -3.38 16 20 C 0.14 4.74 4.30 45.79 0.20 4.93 16 21 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 22 C -0.13 -3.72 5.44 30.89 0.17 -3.55 16 23 N -0.59 -25.96 1.74 -664.44 -1.16 -27.11 16 24 C -0.26 -12.58 8.36 84.03 0.70 -11.88 16 25 H 0.08 3.59 7.86 -2.91 -0.02 3.57 16 26 C -0.02 -0.97 5.36 84.86 0.46 -0.51 16 27 N -0.90 -48.42 9.63 21.65 0.21 -48.22 16 28 Si 0.93 42.83 29.57 68.60 2.03 44.86 16 29 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 30 H -0.31 -15.01 7.11 99.48 0.71 -14.31 16 31 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 32 C 0.13 5.82 4.60 86.85 0.40 6.22 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 2.65 7.21 -2.39 -0.02 2.63 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.06 2.84 6.12 -2.38 -0.01 2.82 16 42 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 43 H 0.43 18.57 3.68 -94.17 -0.35 18.22 16 44 H 0.04 1.73 6.92 -2.39 -0.02 1.71 16 45 H 0.09 2.38 7.97 -2.39 -0.02 2.36 16 46 H 0.10 2.33 7.75 -2.39 -0.02 2.32 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.10 2.25 8.00 -2.39 -0.02 2.23 16 49 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.24 13.36 7.67 -92.71 -0.71 12.65 16 51 H 0.03 1.41 6.27 -2.38 -0.01 1.39 16 52 H 0.05 2.21 3.76 -15.16 -0.06 2.15 16 Total: -1.00 -65.57 391.00 2.84 -62.74 By element: Atomic # 1 Polarization: 51.23 SS G_CDS: -1.30 Total: 49.92 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 5.27 Total: 1.87 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -3.10 Total: -131.83 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.06 Total: -27.56 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.57 2.84 -62.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047178282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.248 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds