Wall clock time and date at job start Wed Apr 1 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35361 * 126.38952 * 2 1 4 4 C 1.41497 * 105.50716 * 180.14024 * 3 2 1 5 5 C 1.47708 * 126.51982 * 179.84507 * 4 3 2 6 6 O 1.21565 * 119.99910 * 352.67815 * 5 4 3 7 7 N 1.34774 * 119.99783 * 172.68234 * 5 4 3 8 8 C 1.46924 * 120.63542 * 353.01233 * 7 5 4 9 9 C 1.53184 * 108.77833 * 233.59205 * 8 7 5 10 10 C 1.53049 * 109.31002 * 305.36138 * 9 8 7 11 11 C 1.53037 * 109.53727 * 61.36767 * 10 9 8 12 12 H 1.08998 * 109.50006 * 58.61983 * 11 10 9 13 13 C 1.53001 * 109.49481 * 178.68234 * 11 10 9 14 14 C 1.53032 * 109.46093 * 300.06715 * 13 11 10 15 15 C 1.53192 * 109.31436 * 178.61623 * 14 13 11 16 16 N 1.46928 * 108.77416 * 54.63384 * 15 14 13 17 17 C 1.36940 * 120.63424 * 126.37480 * 16 15 14 18 18 H 1.07994 * 120.00201 * 219.05676 * 17 16 15 19 19 C 1.38809 * 119.99812 * 39.04716 * 17 16 15 20 20 N 1.31616 * 120.00164 * 6.56467 * 19 17 16 21 21 Si 1.86798 * 120.00102 * 186.56179 * 19 17 16 22 22 H 1.48500 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47265 * 120.00205 * 21 19 17 24 24 H 1.48507 * 109.47304 * 240.00501 * 21 19 17 25 25 C 1.46931 * 118.73954 * 306.39134 * 16 15 14 26 26 C 1.53045 * 109.45605 * 179.97438 * 13 11 10 27 27 C 1.46931 * 120.62847 * 172.99123 * 7 5 4 28 28 N 1.31810 * 106.96265 * 359.58952 * 4 3 2 29 29 N 1.28472 * 110.07197 * 0.25751 * 28 4 3 30 30 H 0.97000 * 124.88160 * 180.02562 * 29 28 4 31 31 H 1.08997 * 109.46768 * 270.29287 * 1 2 3 32 32 H 1.08993 * 109.46732 * 30.29705 * 1 2 3 33 33 H 1.09003 * 109.47205 * 150.29762 * 1 2 3 34 34 H 1.07999 * 127.24473 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.58791 * 113.79776 * 8 7 5 36 36 H 1.09000 * 109.58333 * 353.37635 * 8 7 5 37 37 H 1.09003 * 109.50079 * 185.41180 * 9 8 7 38 38 H 1.08999 * 109.53140 * 65.32966 * 9 8 7 39 39 H 1.09001 * 109.45998 * 301.34191 * 10 9 8 40 40 H 1.09001 * 109.45563 * 181.38571 * 10 9 8 41 41 H 1.09002 * 109.46165 * 60.02698 * 13 11 10 42 42 H 1.09005 * 109.49910 * 298.56373 * 14 13 11 43 43 H 1.08997 * 109.50202 * 58.66568 * 14 13 11 44 44 H 1.09001 * 109.58889 * 294.85338 * 15 14 13 45 45 H 1.09001 * 109.59439 * 174.42060 * 15 14 13 46 46 H 0.97002 * 120.00305 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.58807 * 293.82555 * 25 16 15 48 48 H 1.08998 * 109.58762 * 173.39514 * 25 16 15 49 49 H 1.08998 * 109.50247 * 301.33656 * 26 13 11 50 50 H 1.09003 * 109.49373 * 61.40795 * 26 13 11 51 51 H 1.08993 * 109.58709 * 6.62486 * 27 7 5 52 52 H 1.08997 * 109.58874 * 246.19782 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5853 -0.0033 5 6 4.8765 1.3811 -0.0078 6 8 4.8256 2.5881 -0.1432 7 7 6.0683 0.7689 0.1380 8 6 6.1402 -0.6641 0.4543 9 6 7.0136 -0.8511 1.6988 10 6 8.3741 -0.1897 1.4664 11 6 8.1808 1.3103 1.2330 12 1 7.6834 1.7518 2.0966 13 6 9.5439 1.9759 1.0334 14 6 10.4046 1.7592 2.2800 15 6 11.7804 2.3969 2.0630 16 7 11.5951 3.8074 1.6954 17 6 12.2318 4.7995 2.3921 18 1 11.7179 5.7251 2.6051 19 6 13.5378 4.6154 2.8248 20 7 14.2083 3.5443 2.4567 21 14 14.3439 5.8878 3.9296 22 1 13.3850 6.9898 4.1971 23 1 14.7366 5.2517 5.2128 24 1 15.5507 6.4334 3.2578 25 6 10.7134 4.1331 0.5661 26 6 9.3495 3.4758 0.7994 27 6 7.3205 1.5219 -0.0169 28 7 3.5420 -0.7297 0.0040 29 7 2.3080 -1.0871 0.0060 30 1 1.9966 -2.0057 0.0115 31 1 -0.3633 0.0053 1.0276 32 1 -0.3632 0.8873 -0.5184 33 1 -0.3634 -0.8927 -0.5092 34 1 2.0058 2.1259 -0.0004 35 1 6.5804 -1.2020 -0.3853 36 1 5.1382 -1.0456 0.6505 37 1 7.1541 -1.9153 1.8882 38 1 6.5270 -0.3898 2.5582 39 1 8.8497 -0.6349 0.5925 40 1 9.0063 -0.3426 2.3411 41 1 10.0401 1.5352 0.1687 42 1 9.9211 2.2213 3.1408 43 1 10.5232 0.6906 2.4590 44 1 12.3023 1.8758 1.2605 45 1 12.3623 2.3324 2.9824 46 1 15.1211 3.4158 2.7587 47 1 11.1482 3.7534 -0.3584 48 1 10.5912 5.2141 0.4979 49 1 8.7172 3.6287 -0.0752 50 1 8.8753 3.9219 1.6736 51 1 7.0973 2.5825 -0.1316 52 1 7.8570 1.1622 -0.8948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047230719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:33 Heat of formation + Delta-G solvation = 52.037081 kcal Electronic energy + Delta-G solvation = -31059.498036 eV Core-core repulsion = 27060.626415 eV Total energy + Delta-G solvation = -3998.871621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.07213 -40.09924 -38.25670 -36.65626 -34.15910 -33.14699 -32.39821 -32.13383 -31.21037 -29.91798 -28.96202 -27.50832 -26.05442 -25.19443 -23.56631 -23.08893 -21.74953 -21.61035 -21.24200 -19.90151 -19.15528 -18.83300 -18.19981 -16.77532 -16.60696 -16.28350 -15.86201 -15.04654 -14.79070 -14.49744 -14.26855 -14.15848 -13.94923 -13.61580 -13.59184 -13.48418 -13.41087 -13.28601 -12.98675 -12.85999 -12.81288 -12.60638 -12.16280 -11.96760 -11.62244 -11.27938 -11.16687 -10.92722 -10.85783 -10.68435 -10.45746 -10.42253 -10.25584 -10.12899 -10.01208 -9.96517 -9.79550 -9.69691 -9.31038 -9.26711 -9.21255 -8.55614 -8.40203 -6.38410 -5.71332 -3.26098 1.26558 1.76084 2.40639 2.97169 3.26676 3.40390 3.47852 3.50731 4.05832 4.24674 4.48438 4.54855 4.75574 4.91623 4.95585 4.97145 5.03849 5.11896 5.23498 5.32213 5.32426 5.45201 5.49102 5.54175 5.55790 5.64794 5.74213 5.78075 5.85956 5.88734 5.95980 6.05094 6.08097 6.15002 6.18786 6.24572 6.39687 6.44928 6.51079 6.54339 6.67392 6.72070 6.80789 6.86359 6.97270 7.03176 7.17574 7.32232 7.48195 7.53414 7.74602 7.89115 8.11880 8.62236 9.33422 9.92428 10.56645 11.36299 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026559 B = 0.002087 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.010033 B =13411.770278 C =13966.964002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.015 3.985 3 C -0.178 4.178 4 C 0.000 4.000 5 C 0.598 3.402 6 O -0.532 6.532 7 N -0.596 5.596 8 C 0.087 3.913 9 C -0.133 4.133 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.071 0.929 13 C -0.068 4.068 14 C -0.135 4.135 15 C 0.176 3.824 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.059 0.941 19 C 0.010 3.990 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.146 3.854 26 C -0.130 4.130 27 C 0.115 3.885 28 N -0.259 5.259 29 N -0.386 5.386 30 H 0.443 0.557 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.163 0.837 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.017 0.983 45 H 0.074 0.926 46 H 0.253 0.747 47 H 0.015 0.985 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.056 0.944 51 H 0.097 0.903 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.046 -14.741 -5.236 31.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.161 4.161 5 C 0.384 3.616 6 O -0.407 6.407 7 N -0.328 5.328 8 C -0.036 4.036 9 C -0.172 4.172 10 C -0.155 4.155 11 C -0.113 4.113 12 H 0.089 0.911 13 C -0.088 4.088 14 C -0.174 4.174 15 C 0.051 3.949 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.077 0.923 19 C -0.190 4.190 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.020 3.980 26 C -0.169 4.169 27 C -0.006 4.006 28 N -0.095 5.095 29 N -0.100 5.100 30 H 0.287 0.713 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.181 0.819 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.115 0.885 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.224 -15.025 -5.277 30.680 hybrid contribution -0.005 0.625 0.604 0.869 sum -26.229 -14.400 -4.673 30.285 Atomic orbital electron populations 1.20371 0.86467 1.04061 1.03498 1.21475 0.95423 0.87147 1.07042 1.21545 0.90401 0.99883 1.08766 1.22009 0.95322 0.89612 1.09130 1.16995 0.81530 0.86156 0.76902 1.90801 1.86201 1.13148 1.50531 1.47967 1.05459 1.10679 1.68735 1.22430 1.03677 0.80331 0.97174 1.21932 0.96567 1.00814 0.97861 1.21659 0.96311 0.95127 1.02420 1.21587 0.96572 0.95621 0.97533 0.91099 1.21000 0.93112 0.95556 0.99090 1.22271 0.99540 0.99088 0.96487 1.20672 0.90811 0.83826 0.99635 1.43924 1.52897 1.02269 1.32360 1.19142 0.93152 0.97037 1.29104 0.92293 1.25376 0.96012 0.97427 1.00140 1.69977 1.10329 1.27741 1.46473 0.86250 0.79308 0.81337 0.80055 1.20153 1.21637 1.21596 1.20920 0.89156 0.97393 0.90554 1.22116 0.99250 0.95187 1.00373 1.21862 0.82835 0.97987 0.97957 1.73425 1.00832 1.14931 1.20291 1.43496 1.03219 1.09561 1.53691 0.71254 0.90173 0.89385 0.91064 0.81938 0.91753 0.86151 0.91039 0.91897 0.91910 0.90964 0.91897 0.92954 0.93284 0.96495 0.90765 0.93739 0.96706 0.93028 0.93116 0.92499 0.88496 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.24 10.44 36.01 0.38 0.14 16 2 C 0.01 0.10 7.23 -82.21 -0.59 -0.49 16 3 C -0.18 -1.76 10.74 -39.37 -0.42 -2.19 16 4 C 0.00 0.00 6.82 -82.77 -0.56 -0.57 16 5 C 0.60 8.78 7.69 -12.39 -0.10 8.68 16 6 O -0.53 -9.42 16.36 5.31 0.09 -9.33 16 7 N -0.60 -7.94 2.97 -173.94 -0.52 -8.46 16 8 C 0.09 0.94 6.11 -3.72 -0.02 0.92 16 9 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 10 C -0.12 -1.44 4.85 -26.69 -0.13 -1.57 16 11 C -0.09 -1.34 1.92 -90.50 -0.17 -1.52 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 13 C -0.07 -1.16 1.74 -90.58 -0.16 -1.31 16 14 C -0.13 -2.58 5.05 -26.62 -0.13 -2.72 16 15 C 0.18 4.29 5.21 -3.71 -0.02 4.27 16 16 N -0.59 -15.35 2.94 -172.32 -0.51 -15.86 16 17 C -0.25 -7.21 9.49 -15.06 -0.14 -7.35 16 18 H 0.06 1.67 7.84 -52.49 -0.41 1.26 16 19 C 0.01 0.28 5.10 -17.43 -0.09 0.19 16 20 N -0.90 -26.77 11.42 55.49 0.63 -26.13 16 21 Si 0.90 22.18 29.56 -169.99 -5.02 17.16 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 26 C -0.13 -2.40 5.05 -26.61 -0.13 -2.53 16 27 C 0.12 1.61 5.20 -3.71 -0.02 1.60 16 28 N -0.26 -2.51 8.72 33.42 0.29 -2.22 16 29 N -0.39 -2.44 6.83 33.50 0.23 -2.22 16 30 H 0.44 1.09 8.96 -190.44 -1.71 -0.61 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 1.24 4.18 -68.76 -0.29 0.95 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.84 6.33 -51.93 -0.33 0.51 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 2.01 6.59 -51.93 -0.34 1.67 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 49 H 0.05 0.84 6.50 -51.93 -0.34 0.50 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.10 1.53 5.58 -51.93 -0.29 1.24 16 52 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -34.29 395.96 -11.27 -45.56 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.92 Total: -1.65 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.51 Total: -2.82 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.13 Total: -54.88 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.29 -11.27 -45.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047230719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.598 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds