Wall clock time and date at job start Wed Apr 1 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35361 * 126.38952 * 2 1 4 4 C 1.41497 * 105.50716 * 180.14024 * 3 2 1 5 5 C 1.47708 * 126.51982 * 179.84507 * 4 3 2 6 6 O 1.21565 * 119.99910 * 352.67815 * 5 4 3 7 7 N 1.34774 * 119.99783 * 172.68234 * 5 4 3 8 8 C 1.46924 * 120.63542 * 353.01233 * 7 5 4 9 9 C 1.53184 * 108.77833 * 233.59205 * 8 7 5 10 10 C 1.53049 * 109.31002 * 305.36138 * 9 8 7 11 11 C 1.53037 * 109.53727 * 61.36767 * 10 9 8 12 12 H 1.08998 * 109.50006 * 58.61983 * 11 10 9 13 13 C 1.53001 * 109.49481 * 178.68234 * 11 10 9 14 14 C 1.53032 * 109.46093 * 300.06715 * 13 11 10 15 15 C 1.53192 * 109.31436 * 178.61623 * 14 13 11 16 16 N 1.46928 * 108.77416 * 54.63384 * 15 14 13 17 17 C 1.36940 * 120.63424 * 126.37480 * 16 15 14 18 18 H 1.07994 * 120.00201 * 219.05676 * 17 16 15 19 19 C 1.38809 * 119.99812 * 39.04716 * 17 16 15 20 20 N 1.31616 * 120.00164 * 6.56467 * 19 17 16 21 21 Si 1.86798 * 120.00102 * 186.56179 * 19 17 16 22 22 H 1.48500 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47265 * 120.00205 * 21 19 17 24 24 H 1.48507 * 109.47304 * 240.00501 * 21 19 17 25 25 C 1.46931 * 118.73954 * 306.39134 * 16 15 14 26 26 C 1.53045 * 109.45605 * 179.97438 * 13 11 10 27 27 C 1.46931 * 120.62847 * 172.99123 * 7 5 4 28 28 N 1.31810 * 106.96265 * 359.58952 * 4 3 2 29 29 N 1.28472 * 110.07197 * 0.25751 * 28 4 3 30 30 H 0.97000 * 124.88160 * 180.02562 * 29 28 4 31 31 H 1.08997 * 109.46768 * 270.29287 * 1 2 3 32 32 H 1.08993 * 109.46732 * 30.29705 * 1 2 3 33 33 H 1.09003 * 109.47205 * 150.29762 * 1 2 3 34 34 H 1.07999 * 127.24473 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.58791 * 113.79776 * 8 7 5 36 36 H 1.09000 * 109.58333 * 353.37635 * 8 7 5 37 37 H 1.09003 * 109.50079 * 185.41180 * 9 8 7 38 38 H 1.08999 * 109.53140 * 65.32966 * 9 8 7 39 39 H 1.09001 * 109.45998 * 301.34191 * 10 9 8 40 40 H 1.09001 * 109.45563 * 181.38571 * 10 9 8 41 41 H 1.09002 * 109.46165 * 60.02698 * 13 11 10 42 42 H 1.09005 * 109.49910 * 298.56373 * 14 13 11 43 43 H 1.08997 * 109.50202 * 58.66568 * 14 13 11 44 44 H 1.09001 * 109.58889 * 294.85338 * 15 14 13 45 45 H 1.09001 * 109.59439 * 174.42060 * 15 14 13 46 46 H 0.97002 * 120.00305 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.58807 * 293.82555 * 25 16 15 48 48 H 1.08998 * 109.58762 * 173.39514 * 25 16 15 49 49 H 1.08998 * 109.50247 * 301.33656 * 26 13 11 50 50 H 1.09003 * 109.49373 * 61.40795 * 26 13 11 51 51 H 1.08993 * 109.58709 * 6.62486 * 27 7 5 52 52 H 1.08997 * 109.58874 * 246.19782 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5853 -0.0033 5 6 4.8765 1.3811 -0.0078 6 8 4.8256 2.5881 -0.1432 7 7 6.0683 0.7689 0.1380 8 6 6.1402 -0.6641 0.4543 9 6 7.0136 -0.8511 1.6988 10 6 8.3741 -0.1897 1.4664 11 6 8.1808 1.3103 1.2330 12 1 7.6834 1.7518 2.0966 13 6 9.5439 1.9759 1.0334 14 6 10.4046 1.7592 2.2800 15 6 11.7804 2.3969 2.0630 16 7 11.5951 3.8074 1.6954 17 6 12.2318 4.7995 2.3921 18 1 11.7179 5.7251 2.6051 19 6 13.5378 4.6154 2.8248 20 7 14.2083 3.5443 2.4567 21 14 14.3439 5.8878 3.9296 22 1 13.3850 6.9898 4.1971 23 1 14.7366 5.2517 5.2128 24 1 15.5507 6.4334 3.2578 25 6 10.7134 4.1331 0.5661 26 6 9.3495 3.4758 0.7994 27 6 7.3205 1.5219 -0.0169 28 7 3.5420 -0.7297 0.0040 29 7 2.3080 -1.0871 0.0060 30 1 1.9966 -2.0057 0.0115 31 1 -0.3633 0.0053 1.0276 32 1 -0.3632 0.8873 -0.5184 33 1 -0.3634 -0.8927 -0.5092 34 1 2.0058 2.1259 -0.0004 35 1 6.5804 -1.2020 -0.3853 36 1 5.1382 -1.0456 0.6505 37 1 7.1541 -1.9153 1.8882 38 1 6.5270 -0.3898 2.5582 39 1 8.8497 -0.6349 0.5925 40 1 9.0063 -0.3426 2.3411 41 1 10.0401 1.5352 0.1687 42 1 9.9211 2.2213 3.1408 43 1 10.5232 0.6906 2.4590 44 1 12.3023 1.8758 1.2605 45 1 12.3623 2.3324 2.9824 46 1 15.1211 3.4158 2.7587 47 1 11.1482 3.7534 -0.3584 48 1 10.5912 5.2141 0.4979 49 1 8.7172 3.6287 -0.0752 50 1 8.8753 3.9219 1.6736 51 1 7.0973 2.5825 -0.1316 52 1 7.8570 1.1622 -0.8948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047230719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:32 Heat of formation + Delta-G solvation = 31.096112 kcal Electronic energy + Delta-G solvation = -31060.406104 eV Core-core repulsion = 27060.626415 eV Total energy + Delta-G solvation = -3999.779689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.73779 -41.19937 -39.66157 -38.05532 -35.68536 -34.06488 -33.46312 -32.91907 -32.71828 -31.61690 -30.51409 -28.01896 -27.19270 -26.83667 -24.83084 -24.39952 -23.24687 -22.66861 -22.22561 -21.14801 -20.71001 -19.88072 -18.89364 -18.64389 -17.61573 -17.03961 -16.98130 -16.81185 -16.00629 -15.74199 -15.53211 -15.29498 -15.25535 -14.91116 -14.77553 -14.70689 -14.48607 -14.15540 -14.05006 -13.96333 -13.77927 -13.64820 -13.51722 -13.17465 -12.94495 -12.81441 -12.73196 -12.62572 -12.21772 -12.13128 -11.98160 -11.90219 -11.83893 -11.63550 -11.44639 -11.41021 -11.11349 -10.81181 -10.76715 -10.56862 -10.45058 -9.90543 -9.61646 -8.49709 -7.87314 -5.46981 0.44657 1.10812 1.43815 1.44635 1.56186 1.75186 2.14385 2.29290 2.48700 3.26135 3.27348 3.66540 3.74238 3.77914 3.81319 3.94356 3.99375 4.12237 4.21921 4.27912 4.35844 4.44692 4.46489 4.57955 4.60200 4.64899 4.68123 4.75950 4.80348 4.81887 4.90634 4.91861 4.98184 5.04115 5.05597 5.08299 5.10455 5.14909 5.15731 5.29951 5.33500 5.36963 5.41725 5.45954 5.48677 5.57231 5.61289 5.67056 5.80837 6.12807 6.35436 6.45680 6.82431 7.09287 7.18553 7.85517 8.43332 9.17290 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026559 B = 0.002087 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.010033 B =13411.770278 C =13966.964002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.039 3.961 3 C -0.209 4.209 4 C -0.031 4.031 5 C 0.591 3.409 6 O -0.577 6.577 7 N -0.596 5.596 8 C 0.086 3.914 9 C -0.126 4.126 10 C -0.116 4.116 11 C -0.080 4.080 12 H 0.055 0.945 13 C -0.060 4.060 14 C -0.119 4.119 15 C 0.183 3.817 16 N -0.611 5.611 17 C -0.270 4.270 18 H 0.055 0.945 19 C -0.042 4.042 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.288 1.288 25 C 0.142 3.858 26 C -0.118 4.118 27 C 0.118 3.882 28 N -0.261 5.261 29 N -0.366 5.366 30 H 0.462 0.538 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.075 0.925 44 H -0.002 1.002 45 H 0.039 0.961 46 H 0.251 0.749 47 H 0.014 0.986 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.075 0.925 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.556 -17.052 -5.326 34.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.237 4.237 4 C -0.190 4.190 5 C 0.378 3.622 6 O -0.455 6.455 7 N -0.327 5.327 8 C -0.036 4.036 9 C -0.164 4.164 10 C -0.153 4.153 11 C -0.100 4.100 12 H 0.073 0.927 13 C -0.079 4.079 14 C -0.158 4.158 15 C 0.057 3.943 16 N -0.335 5.335 17 C -0.401 4.401 18 H 0.072 0.928 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.213 1.213 24 H -0.214 1.214 25 C 0.017 3.983 26 C -0.157 4.157 27 C -0.004 4.004 28 N -0.098 5.098 29 N -0.083 5.083 30 H 0.311 0.689 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.175 0.825 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.016 0.984 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.031 0.969 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.094 0.906 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -28.757 -17.385 -5.371 34.030 hybrid contribution 0.695 1.300 0.590 1.588 sum -28.062 -16.085 -4.781 32.696 Atomic orbital electron populations 1.20552 0.83302 1.05594 1.04809 1.21905 0.96949 0.85909 1.04007 1.21704 0.90372 1.00883 1.10720 1.21728 0.94820 0.90528 1.11937 1.17439 0.82634 0.85967 0.76115 1.90758 1.86973 1.15078 1.52722 1.48063 1.04803 1.11652 1.68175 1.22620 1.04475 0.78754 0.97753 1.21896 0.95095 1.02175 0.97262 1.21649 0.97567 0.93323 1.02783 1.21388 0.94483 0.97031 0.97085 0.92687 1.20894 0.94376 0.94680 0.97960 1.22063 0.96593 0.99966 0.97204 1.20508 0.93088 0.83532 0.97135 1.44200 1.53416 1.02465 1.33426 1.19407 0.93649 0.97502 1.29496 0.92761 1.26126 0.96521 0.99405 1.01774 1.70127 1.10435 1.29342 1.47709 0.85204 0.78152 0.79029 0.78041 1.19263 1.21347 1.21434 1.21039 0.90351 0.97552 0.89359 1.21967 0.96993 0.95971 1.00780 1.21727 0.83407 0.97194 0.98122 1.73278 1.02437 1.13679 1.20392 1.43591 1.02307 1.10700 1.51664 0.68889 0.88799 0.88902 0.88523 0.82478 0.90431 0.85346 0.88296 0.92859 0.90830 0.91174 0.91424 0.93995 0.90699 0.98378 0.94225 0.93962 0.96854 0.93598 0.90928 0.93752 0.90613 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 10.44 71.24 0.74 0.57 16 2 C 0.04 0.42 7.23 41.40 0.30 0.72 16 3 C -0.21 -4.02 10.74 22.41 0.24 -3.78 16 4 C -0.03 -0.74 6.82 42.45 0.29 -0.45 16 5 C 0.59 17.60 7.69 86.75 0.67 18.27 16 6 O -0.58 -21.38 16.36 -3.92 -0.06 -21.44 16 7 N -0.60 -15.48 2.97 -822.49 -2.44 -17.93 16 8 C 0.09 1.67 6.11 86.36 0.53 2.20 16 9 C -0.13 -2.33 6.08 30.67 0.19 -2.15 16 10 C -0.12 -2.58 4.85 30.62 0.15 -2.43 16 11 C -0.08 -2.23 1.92 -10.72 -0.02 -2.25 16 12 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 13 C -0.06 -2.00 1.74 -10.77 -0.02 -2.02 16 14 C -0.12 -4.58 5.05 30.67 0.15 -4.43 16 15 C 0.18 9.16 5.21 86.36 0.45 9.61 16 16 N -0.61 -32.66 2.94 -699.09 -2.06 -34.72 16 17 C -0.27 -15.73 9.49 84.03 0.80 -14.93 16 18 H 0.05 3.15 7.84 -2.91 -0.02 3.12 16 19 C -0.04 -2.44 5.10 84.86 0.43 -2.01 16 20 N -0.93 -56.78 11.42 21.65 0.25 -56.53 16 21 Si 0.97 46.44 29.56 68.60 2.03 48.47 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 C 0.14 6.45 6.52 86.36 0.56 7.01 16 26 C -0.12 -4.39 5.05 30.67 0.16 -4.23 16 27 C 0.12 3.23 5.20 86.36 0.45 3.68 16 28 N -0.26 -4.53 8.72 -48.18 -0.42 -4.95 16 29 N -0.37 -3.56 6.83 -47.93 -0.33 -3.89 16 30 H 0.46 0.53 8.96 -219.99 -1.97 -1.44 16 31 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.13 2.35 4.18 -24.16 -0.10 2.25 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.61 6.33 -2.39 -0.02 1.60 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.07 2.49 6.33 -2.39 -0.02 2.47 16 44 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.04 2.23 6.59 -2.39 -0.02 2.21 16 46 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 49 H 0.07 2.39 6.50 -2.39 -0.02 2.38 16 50 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.08 2.42 5.58 -2.39 -0.01 2.41 16 52 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -78.02 395.96 1.89 -76.13 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -1.13 Total: 11.47 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.07 Total: 3.40 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -5.00 Total: -118.02 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -78.02 1.89 -76.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047230719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.224 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds