Wall clock time and date at job start Wed Apr 1 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34668 * 125.98668 * 2 1 4 4 N 1.36891 * 106.81701 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.39716 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47479 * 67.62712 * 5 4 3 7 7 C 1.52998 * 109.47105 * 307.61942 * 5 4 3 8 8 C 1.50706 * 109.46757 * 187.62307 * 5 4 3 9 9 O 1.21280 * 120.00149 * 243.06724 * 8 5 4 10 10 N 1.34786 * 119.99839 * 63.07231 * 8 5 4 11 11 C 1.47849 * 122.22497 * 354.61140 * 10 8 5 12 12 C 1.52719 * 111.05928 * 232.51054 * 11 10 8 13 13 C 1.53874 * 111.52160 * 311.46574 * 12 11 10 14 14 C 1.50564 * 108.14816 * 56.31463 * 13 12 11 15 15 H 1.09003 * 106.90088 * 52.07180 * 14 13 12 16 16 C 1.45722 * 122.22130 * 174.63851 * 10 8 5 17 17 H 1.09008 * 111.06958 * 241.37535 * 16 10 8 18 18 C 1.53421 * 116.37236 * 9.88313 * 16 10 8 19 19 C 1.55468 * 101.67606 * 153.54307 * 18 16 10 20 20 N 1.45023 * 120.13529 * 176.39891 * 14 13 12 21 21 C 1.36937 * 126.55779 * 332.43564 * 20 14 13 22 22 H 1.07997 * 120.00384 * 359.44012 * 21 20 14 23 23 C 1.38812 * 119.99360 * 179.71406 * 21 20 14 24 24 N 1.31619 * 120.00135 * 359.72931 * 23 21 20 25 25 Si 1.86804 * 119.99869 * 179.72488 * 23 21 20 26 26 H 1.48502 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47095 * 119.99824 * 25 23 21 28 28 H 1.48496 * 109.47293 * 240.00168 * 25 23 21 29 29 C 1.35052 * 107.20032 * 0.26447 * 4 3 2 30 30 N 1.30497 * 108.70045 * 359.56139 * 29 4 3 31 31 H 1.09001 * 109.47249 * 89.99474 * 1 2 3 32 32 H 1.08998 * 109.47020 * 209.99898 * 1 2 3 33 33 H 1.08998 * 109.47148 * 329.99729 * 1 2 3 34 34 H 1.07997 * 126.59504 * 0.04112 * 3 2 1 35 35 H 1.08998 * 109.47159 * 175.06313 * 6 5 4 36 36 H 1.09004 * 109.46615 * 295.06345 * 6 5 4 37 37 H 1.08997 * 109.47304 * 55.05798 * 6 5 4 38 38 H 1.09001 * 109.47574 * 305.43719 * 7 5 4 39 39 H 1.09009 * 109.46763 * 65.43838 * 7 5 4 40 40 H 1.08999 * 109.47407 * 185.43597 * 7 5 4 41 41 H 1.09000 * 109.16063 * 352.91627 * 11 10 8 42 42 H 1.08994 * 109.15997 * 112.15672 * 11 10 8 43 43 H 1.09004 * 109.07342 * 71.99524 * 12 11 10 44 44 H 1.09004 * 109.06998 * 190.94281 * 12 11 10 45 45 H 1.08993 * 109.88330 * 176.38678 * 13 12 11 46 46 H 1.08997 * 109.87968 * 297.40114 * 13 12 11 47 47 H 1.08999 * 110.99089 * 35.44758 * 18 16 10 48 48 H 1.09009 * 111.01945 * 271.65512 * 18 16 10 49 49 H 1.08994 * 109.96544 * 218.01886 * 19 18 16 50 50 H 1.09006 * 109.99082 * 96.79475 * 19 18 16 51 51 H 0.96999 * 119.99623 * 180.02562 * 24 23 21 52 52 H 1.07997 * 125.64655 * 179.70804 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5913 0.6402 -0.0006 5 6 4.7996 1.4685 -0.0003 6 6 4.9101 2.2089 1.3341 7 6 4.7221 2.4839 -1.1421 8 6 6.0101 0.5911 -0.1896 9 8 6.8488 0.5181 0.6834 10 7 6.1608 -0.1126 -1.3293 11 6 5.1165 -0.1525 -2.3752 12 6 4.7666 -1.5919 -2.7466 13 6 6.0299 -2.4293 -3.0124 14 6 6.9061 -2.3570 -1.7901 15 1 6.2837 -2.6286 -0.9375 16 6 7.3636 -0.8849 -1.6123 17 1 7.8640 -0.5168 -2.5081 18 6 8.3550 -1.0515 -0.4533 19 6 9.0583 -2.3859 -0.8302 20 7 8.1366 -3.1222 -1.7301 21 6 8.3994 -4.2966 -2.3836 22 1 7.6451 -4.7448 -3.0132 23 6 9.6335 -4.9138 -2.2321 24 7 10.5528 -4.3676 -1.4646 25 14 9.9895 -6.5198 -3.1173 26 1 8.8008 -6.9211 -3.9118 27 1 11.1518 -6.3384 -4.0236 28 1 10.2990 -7.5763 -2.1207 29 6 3.5449 -0.7095 -0.0069 30 7 2.2952 -1.0852 -0.0006 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.9750 2.1201 0.0006 35 1 5.8521 2.7561 1.3690 36 1 4.0797 2.9083 1.4313 37 1 4.8770 1.4897 2.1525 38 1 4.5466 1.9609 -2.0822 39 1 3.9037 3.1793 -0.9550 40 1 5.6605 3.0350 -1.2026 41 1 4.2218 0.3495 -2.0067 42 1 5.4785 0.3672 -3.2622 43 1 4.2049 -2.0442 -1.9293 44 1 4.1470 -1.5877 -3.6434 45 1 5.7532 -3.4645 -3.2118 46 1 6.5733 -2.0202 -3.8641 47 1 7.8314 -1.1416 0.4984 48 1 9.0685 -0.2278 -0.4277 49 1 9.2490 -2.9727 0.0682 50 1 9.9963 -2.1800 -1.3460 51 1 11.4152 -4.7988 -1.3591 52 1 4.4003 -1.3687 -0.0134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049544357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:22 Heat of formation + Delta-G solvation = 82.800912 kcal Electronic energy + Delta-G solvation = -33436.181096 eV Core-core repulsion = 29438.643495 eV Total energy + Delta-G solvation = -3997.537601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.68328 -40.50353 -38.30847 -36.19627 -35.33425 -32.78067 -32.19949 -32.00167 -30.61725 -29.06180 -28.53972 -27.67341 -27.06609 -25.20253 -24.50948 -23.02345 -21.98762 -21.60580 -20.58120 -20.24799 -19.56563 -19.05753 -17.49052 -16.74257 -16.19436 -15.81566 -15.36996 -14.97958 -14.94333 -14.75948 -14.37510 -14.30175 -13.88796 -13.82156 -13.67910 -13.36324 -13.21270 -12.99688 -12.80402 -12.67128 -12.58099 -12.49822 -12.36025 -12.29653 -12.10622 -11.87715 -11.71038 -11.57264 -11.10310 -10.88185 -10.73346 -10.58959 -10.46636 -10.12378 -10.09101 -9.99268 -9.89059 -9.65856 -9.64929 -9.17348 -8.61594 -8.43598 -8.39975 -6.85873 -5.72171 -3.06689 1.91364 2.00952 2.78719 2.90730 3.05350 3.39776 3.45406 3.47752 3.88082 4.31018 4.39812 4.47561 4.52307 4.67977 4.73829 4.98700 5.05497 5.06284 5.17859 5.18760 5.23254 5.29767 5.32041 5.34986 5.39195 5.49961 5.57908 5.58196 5.60875 5.71340 5.74601 5.78225 5.83796 5.87768 5.94515 6.01777 6.12733 6.17761 6.28387 6.33478 6.47310 6.64587 6.66490 6.69378 6.80853 7.03397 7.07531 7.40547 7.57040 7.61768 7.81087 8.02746 8.04381 8.22277 9.17220 9.80936 10.47931 11.39848 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.003497 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.526758 B = 8005.567544 C = 8912.860923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.002 4.002 3 C -0.055 4.055 4 N -0.449 5.449 5 C 0.142 3.858 6 C -0.140 4.140 7 C -0.166 4.166 8 C 0.516 3.484 9 O -0.508 6.508 10 N -0.589 5.589 11 C 0.096 3.904 12 C -0.131 4.131 13 C -0.116 4.116 14 C 0.163 3.837 15 H 0.012 0.988 16 C 0.114 3.886 17 H 0.082 0.918 18 C -0.133 4.133 19 C 0.173 3.827 20 N -0.589 5.589 21 C -0.227 4.227 22 H 0.080 0.920 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.196 3.804 30 N -0.485 5.485 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.171 0.829 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.040 0.960 50 H 0.057 0.943 51 H 0.252 0.748 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 17.132 0.072 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 C -0.187 4.187 4 N -0.135 5.135 5 C 0.055 3.945 6 C -0.198 4.198 7 C -0.224 4.224 8 C 0.300 3.700 9 O -0.382 6.382 10 N -0.321 5.321 11 C -0.026 4.026 12 C -0.170 4.170 13 C -0.155 4.155 14 C 0.053 3.947 15 H 0.029 0.971 16 C 0.010 3.990 17 H 0.100 0.900 18 C -0.172 4.172 19 C 0.049 3.951 20 N -0.314 5.314 21 C -0.355 4.355 22 H 0.098 0.902 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.086 4.086 30 N -0.204 5.204 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.188 0.812 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.063 0.937 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -16.033 16.199 0.553 22.798 hybrid contribution 0.654 -0.008 -0.574 0.871 sum -15.378 16.191 -0.021 22.330 Atomic orbital electron populations 1.19993 0.87823 1.02434 1.02020 1.20739 0.96437 0.88547 1.07401 1.22285 0.82628 1.00313 1.13500 1.45699 1.05799 1.07386 1.54622 1.21209 0.82074 0.91553 0.99704 1.21975 1.03436 1.00416 0.93976 1.22448 1.04294 0.98398 0.97258 1.19999 0.87232 0.80488 0.82260 1.90763 1.43434 1.62956 1.41089 1.48048 1.18652 1.47384 1.18053 1.22149 0.90919 0.98668 0.90870 1.21959 0.98639 0.94148 1.02252 1.21334 0.94810 1.00101 0.99241 1.20476 0.89573 0.89174 0.95466 0.97071 1.22443 0.85148 0.92085 0.99348 0.89974 1.23032 0.97193 0.99306 0.97622 1.21739 0.92402 0.87209 0.93796 1.44059 1.10691 1.23101 1.53548 1.19041 0.98206 0.96404 1.21844 0.90229 1.24807 0.96387 0.99117 0.99978 1.69952 1.05662 1.39537 1.41499 0.86068 0.77831 0.83190 0.78813 1.20478 1.21793 1.21735 1.25133 0.97263 0.81821 1.04404 1.70268 1.00093 1.30140 1.19862 0.91562 0.91279 0.91629 0.81185 0.89699 0.91281 0.90930 0.90105 0.90541 0.89822 0.89508 0.91341 0.90973 0.90764 0.91195 0.91939 0.89725 0.92097 0.94129 0.92483 0.93750 0.78238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.42 36.01 0.38 -0.18 16 2 C 0.00 -0.03 7.09 -82.85 -0.59 -0.61 16 3 C -0.06 -0.54 10.67 -16.56 -0.18 -0.72 16 4 N -0.45 -5.02 1.52 -105.82 -0.16 -5.18 16 5 C 0.14 1.49 0.79 -132.97 -0.10 1.39 16 6 C -0.14 -1.34 7.95 37.16 0.30 -1.05 16 7 C -0.17 -1.28 7.93 37.16 0.29 -0.98 16 8 C 0.52 7.32 5.45 -10.98 -0.06 7.26 16 9 O -0.51 -8.84 12.70 5.56 0.07 -8.77 16 10 N -0.59 -8.42 2.44 -164.19 -0.40 -8.82 16 11 C 0.10 1.14 3.66 -3.45 -0.01 1.12 16 12 C -0.13 -1.72 5.72 -26.42 -0.15 -1.88 16 13 C -0.12 -1.96 5.43 -27.49 -0.15 -2.11 16 14 C 0.16 3.28 2.59 -68.79 -0.18 3.10 16 15 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 16 C 0.11 2.03 3.30 -66.98 -0.22 1.81 16 17 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 18 C -0.13 -2.69 5.07 -25.20 -0.13 -2.82 16 19 C 0.17 4.26 5.47 -1.69 -0.01 4.25 16 20 N -0.59 -14.80 3.35 -163.77 -0.55 -15.35 16 21 C -0.23 -6.19 9.97 -15.06 -0.15 -6.34 16 22 H 0.08 2.10 7.38 -52.49 -0.39 1.71 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.96 10.46 55.49 0.58 -26.38 16 25 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 29 C 0.20 2.71 8.09 -90.37 -0.73 1.98 16 30 N -0.49 -7.05 11.25 -10.87 -0.12 -7.17 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.17 1.12 8.05 -52.49 -0.42 0.70 16 35 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.63 5.01 -51.93 -0.26 0.37 16 39 H 0.08 0.43 8.00 -51.92 -0.42 0.02 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.93 3.43 -51.93 -0.18 0.76 16 42 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.07 1.03 5.96 -51.93 -0.31 0.72 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.25 7.78 -51.93 -0.40 0.85 16 46 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 47 H 0.08 1.80 6.09 -51.93 -0.32 1.48 16 48 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 49 H 0.04 1.11 7.81 -51.93 -0.41 0.70 16 50 H 0.06 1.53 7.18 -51.93 -0.37 1.16 16 51 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 52 H 0.20 3.10 6.22 -52.49 -0.33 2.77 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -31.98 384.44 -10.01 -41.99 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.41 Total: 2.90 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.79 Total: 3.96 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.65 Total: -62.89 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.98 -10.01 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049544357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.795 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds