Wall clock time and date at job start Wed Apr 1 2020 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34668 * 125.98668 * 2 1 4 4 N 1.36891 * 106.81701 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.39716 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47479 * 67.62712 * 5 4 3 7 7 C 1.52998 * 109.47105 * 307.61942 * 5 4 3 8 8 C 1.50706 * 109.46757 * 187.62307 * 5 4 3 9 9 O 1.21280 * 120.00149 * 243.06724 * 8 5 4 10 10 N 1.34786 * 119.99839 * 63.07231 * 8 5 4 11 11 C 1.47849 * 122.22497 * 354.61140 * 10 8 5 12 12 C 1.52719 * 111.05928 * 232.51054 * 11 10 8 13 13 C 1.53874 * 111.52160 * 311.46574 * 12 11 10 14 14 C 1.50564 * 108.14816 * 56.31463 * 13 12 11 15 15 H 1.09003 * 106.90088 * 52.07180 * 14 13 12 16 16 C 1.45722 * 122.22130 * 174.63851 * 10 8 5 17 17 H 1.09008 * 111.06958 * 241.37535 * 16 10 8 18 18 C 1.53421 * 116.37236 * 9.88313 * 16 10 8 19 19 C 1.55468 * 101.67606 * 153.54307 * 18 16 10 20 20 N 1.45023 * 120.13529 * 176.39891 * 14 13 12 21 21 C 1.36937 * 126.55779 * 332.43564 * 20 14 13 22 22 H 1.07997 * 120.00384 * 359.44012 * 21 20 14 23 23 C 1.38812 * 119.99360 * 179.71406 * 21 20 14 24 24 N 1.31619 * 120.00135 * 359.72931 * 23 21 20 25 25 Si 1.86804 * 119.99869 * 179.72488 * 23 21 20 26 26 H 1.48502 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47095 * 119.99824 * 25 23 21 28 28 H 1.48496 * 109.47293 * 240.00168 * 25 23 21 29 29 C 1.35052 * 107.20032 * 0.26447 * 4 3 2 30 30 N 1.30497 * 108.70045 * 359.56139 * 29 4 3 31 31 H 1.09001 * 109.47249 * 89.99474 * 1 2 3 32 32 H 1.08998 * 109.47020 * 209.99898 * 1 2 3 33 33 H 1.08998 * 109.47148 * 329.99729 * 1 2 3 34 34 H 1.07997 * 126.59504 * 0.04112 * 3 2 1 35 35 H 1.08998 * 109.47159 * 175.06313 * 6 5 4 36 36 H 1.09004 * 109.46615 * 295.06345 * 6 5 4 37 37 H 1.08997 * 109.47304 * 55.05798 * 6 5 4 38 38 H 1.09001 * 109.47574 * 305.43719 * 7 5 4 39 39 H 1.09009 * 109.46763 * 65.43838 * 7 5 4 40 40 H 1.08999 * 109.47407 * 185.43597 * 7 5 4 41 41 H 1.09000 * 109.16063 * 352.91627 * 11 10 8 42 42 H 1.08994 * 109.15997 * 112.15672 * 11 10 8 43 43 H 1.09004 * 109.07342 * 71.99524 * 12 11 10 44 44 H 1.09004 * 109.06998 * 190.94281 * 12 11 10 45 45 H 1.08993 * 109.88330 * 176.38678 * 13 12 11 46 46 H 1.08997 * 109.87968 * 297.40114 * 13 12 11 47 47 H 1.08999 * 110.99089 * 35.44758 * 18 16 10 48 48 H 1.09009 * 111.01945 * 271.65512 * 18 16 10 49 49 H 1.08994 * 109.96544 * 218.01886 * 19 18 16 50 50 H 1.09006 * 109.99082 * 96.79475 * 19 18 16 51 51 H 0.96999 * 119.99623 * 180.02562 * 24 23 21 52 52 H 1.07997 * 125.64655 * 179.70804 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5913 0.6402 -0.0006 5 6 4.7996 1.4685 -0.0003 6 6 4.9101 2.2089 1.3341 7 6 4.7221 2.4839 -1.1421 8 6 6.0101 0.5911 -0.1896 9 8 6.8488 0.5181 0.6834 10 7 6.1608 -0.1126 -1.3293 11 6 5.1165 -0.1525 -2.3752 12 6 4.7666 -1.5919 -2.7466 13 6 6.0299 -2.4293 -3.0124 14 6 6.9061 -2.3570 -1.7901 15 1 6.2837 -2.6286 -0.9375 16 6 7.3636 -0.8849 -1.6123 17 1 7.8640 -0.5168 -2.5081 18 6 8.3550 -1.0515 -0.4533 19 6 9.0583 -2.3859 -0.8302 20 7 8.1366 -3.1222 -1.7301 21 6 8.3994 -4.2966 -2.3836 22 1 7.6451 -4.7448 -3.0132 23 6 9.6335 -4.9138 -2.2321 24 7 10.5528 -4.3676 -1.4646 25 14 9.9895 -6.5198 -3.1173 26 1 8.8008 -6.9211 -3.9118 27 1 11.1518 -6.3384 -4.0236 28 1 10.2990 -7.5763 -2.1207 29 6 3.5449 -0.7095 -0.0069 30 7 2.2952 -1.0852 -0.0006 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.9750 2.1201 0.0006 35 1 5.8521 2.7561 1.3690 36 1 4.0797 2.9083 1.4313 37 1 4.8770 1.4897 2.1525 38 1 4.5466 1.9609 -2.0822 39 1 3.9037 3.1793 -0.9550 40 1 5.6605 3.0350 -1.2026 41 1 4.2218 0.3495 -2.0067 42 1 5.4785 0.3672 -3.2622 43 1 4.2049 -2.0442 -1.9293 44 1 4.1470 -1.5877 -3.6434 45 1 5.7532 -3.4645 -3.2118 46 1 6.5733 -2.0202 -3.8641 47 1 7.8314 -1.1416 0.4984 48 1 9.0685 -0.2278 -0.4277 49 1 9.2490 -2.9727 0.0682 50 1 9.9963 -2.1800 -1.3460 51 1 11.4152 -4.7988 -1.3591 52 1 4.4003 -1.3687 -0.0134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049544357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:21 Heat of formation + Delta-G solvation = 64.289574 kcal Electronic energy + Delta-G solvation = -33436.983807 eV Core-core repulsion = 29438.643495 eV Total energy + Delta-G solvation = -3998.340313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.60613 -41.73546 -39.70859 -37.33939 -36.69091 -34.30172 -33.95935 -32.76110 -31.53802 -30.87677 -29.94407 -28.40305 -27.91298 -26.56036 -26.33874 -24.01528 -23.21816 -22.94517 -22.16328 -21.24697 -21.00801 -20.11982 -18.76425 -18.30131 -17.43593 -16.94766 -16.85899 -16.35867 -16.28383 -16.02053 -15.60391 -15.44463 -15.33064 -14.97042 -14.75971 -14.41245 -14.35262 -14.14916 -14.01310 -13.87780 -13.59908 -13.39937 -13.28136 -13.21598 -13.18783 -13.03960 -12.94953 -12.79590 -12.76665 -12.55153 -12.28083 -12.05352 -11.90238 -11.84789 -11.74667 -11.63825 -11.50955 -10.92271 -10.80897 -10.59689 -10.44836 -9.73357 -9.22471 -8.94642 -7.87167 -5.24195 0.97705 1.07452 1.44437 1.45603 1.55733 1.64776 1.94623 2.14703 2.47626 2.89078 3.31298 3.32976 3.57670 3.60300 3.65826 3.82516 3.84743 3.87502 3.93909 3.96323 4.15772 4.23023 4.35928 4.45960 4.47893 4.50276 4.54013 4.56213 4.61433 4.64021 4.68411 4.70026 4.83032 4.90606 4.99437 5.02645 5.04000 5.05918 5.07168 5.13184 5.21353 5.22674 5.29983 5.32925 5.44741 5.52136 5.55310 5.68515 5.90078 6.12313 6.14769 6.25444 6.88534 7.02944 7.14246 7.72257 8.41170 9.24520 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.003497 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.526758 B = 8005.567544 C = 8912.860923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.028 4.028 3 C -0.030 4.030 4 N -0.443 5.443 5 C 0.151 3.849 6 C -0.137 4.137 7 C -0.164 4.164 8 C 0.510 3.490 9 O -0.548 6.548 10 N -0.587 5.587 11 C 0.098 3.902 12 C -0.121 4.121 13 C -0.109 4.109 14 C 0.157 3.843 15 H -0.011 1.011 16 C 0.133 3.867 17 H 0.088 0.912 18 C -0.115 4.115 19 C 0.183 3.817 20 N -0.609 5.609 21 C -0.234 4.234 22 H 0.087 0.913 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.263 1.263 27 H -0.290 1.290 28 H -0.296 1.296 29 C 0.172 3.828 30 N -0.516 5.516 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.216 0.784 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.070 0.930 49 H -0.002 1.002 50 H 0.029 0.971 51 H 0.247 0.753 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.737 20.353 -1.713 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.157 4.157 3 C -0.162 4.162 4 N -0.129 5.129 5 C 0.063 3.937 6 C -0.195 4.195 7 C -0.221 4.221 8 C 0.296 3.704 9 O -0.424 6.424 10 N -0.319 5.319 11 C -0.022 4.022 12 C -0.160 4.160 13 C -0.147 4.147 14 C 0.048 3.952 15 H 0.007 0.993 16 C 0.028 3.972 17 H 0.106 0.894 18 C -0.153 4.153 19 C 0.058 3.942 20 N -0.334 5.334 21 C -0.362 4.362 22 H 0.105 0.895 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.187 1.187 27 H -0.217 1.217 28 H -0.223 1.223 29 C -0.109 4.109 30 N -0.236 5.236 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.123 0.877 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.017 0.983 50 H 0.047 0.953 51 H 0.056 0.944 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.284 19.442 -1.255 27.413 hybrid contribution 1.576 -1.022 0.083 1.880 sum -17.708 18.420 -1.172 25.579 Atomic orbital electron populations 1.20065 0.85930 1.03084 1.02844 1.21318 0.97817 0.88330 1.08202 1.22915 0.81130 1.01731 1.10383 1.45732 1.06671 1.06470 1.53998 1.21241 0.79784 0.90855 1.01787 1.22003 1.04986 1.00194 0.92354 1.22516 1.06093 0.97882 0.95576 1.20759 0.88163 0.80231 0.81203 1.90743 1.45316 1.64240 1.42149 1.48036 1.17893 1.46845 1.19115 1.22353 0.90869 0.97996 0.91030 1.21895 0.96662 0.94277 1.03120 1.21274 0.95772 1.00261 0.97430 1.20623 0.88014 0.90066 0.96458 0.99337 1.21984 0.85938 0.91203 0.98094 0.89385 1.22753 0.97604 0.96906 0.98057 1.21442 0.92194 0.88853 0.91704 1.44301 1.12322 1.23422 1.53342 1.19425 0.98278 0.97242 1.21282 0.89524 1.25671 0.96471 1.02602 1.01216 1.70173 1.05807 1.40970 1.43224 0.85013 0.77938 0.78922 0.77497 1.18721 1.21700 1.22326 1.24571 0.96485 0.82837 1.07046 1.70212 1.00769 1.32187 1.20389 0.90603 0.92695 0.88941 0.76776 0.89691 0.87754 0.93588 0.89871 0.87162 0.89217 0.87637 0.88646 0.92441 0.87741 0.92721 0.91376 0.90925 0.91162 0.98348 0.95284 0.94415 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.42 71.24 0.74 -0.12 16 2 C -0.03 -0.58 7.09 41.39 0.29 -0.29 16 3 C -0.03 -0.45 10.67 83.08 0.89 0.43 16 4 N -0.44 -8.67 1.52 -488.71 -0.74 -9.41 16 5 C 0.15 2.71 0.79 2.86 0.00 2.72 16 6 C -0.14 -2.25 7.95 71.98 0.57 -1.68 16 7 C -0.16 -1.66 7.93 71.98 0.57 -1.09 16 8 C 0.51 14.05 5.45 87.66 0.48 14.53 16 9 O -0.55 -19.41 12.70 -3.03 -0.04 -19.44 16 10 N -0.59 -16.21 2.44 -791.77 -1.93 -18.14 16 11 C 0.10 2.05 3.66 86.03 0.32 2.36 16 12 C -0.12 -2.98 5.72 30.80 0.18 -2.80 16 13 C -0.11 -3.64 5.43 30.10 0.16 -3.47 16 14 C 0.16 6.55 2.59 45.23 0.12 6.67 16 15 H -0.01 -0.50 8.01 -2.39 -0.02 -0.52 16 16 C 0.13 4.81 3.30 46.03 0.15 4.96 16 17 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 18 C -0.11 -4.89 5.07 31.58 0.16 -4.73 16 19 C 0.18 9.69 5.47 86.87 0.48 10.17 16 20 N -0.61 -32.17 3.35 -672.06 -2.25 -34.42 16 21 C -0.23 -13.20 9.97 84.03 0.84 -12.36 16 22 H 0.09 4.65 7.38 -2.91 -0.02 4.63 16 23 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 24 N -0.95 -58.85 10.46 21.65 0.23 -58.62 16 25 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 29 C 0.17 4.69 8.09 180.26 1.46 6.14 16 30 N -0.52 -14.61 11.25 -188.32 -2.12 -16.73 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.22 1.26 8.05 -2.91 -0.02 1.23 16 35 H 0.08 1.42 8.00 -2.39 -0.02 1.40 16 36 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.84 5.01 -2.39 -0.01 0.83 16 39 H 0.11 0.45 8.00 -2.38 -0.02 0.43 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.11 1.88 3.43 -2.39 -0.01 1.87 16 42 H 0.10 1.56 8.10 -2.39 -0.02 1.54 16 43 H 0.06 1.63 5.96 -2.38 -0.01 1.61 16 44 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.05 1.97 7.78 -2.39 -0.02 1.96 16 46 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 47 H 0.07 3.29 6.09 -2.39 -0.01 3.28 16 48 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 49 H 0.00 -0.11 7.81 -2.39 -0.02 -0.12 16 50 H 0.03 1.67 7.18 -2.38 -0.02 1.66 16 51 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 52 H 0.17 5.63 6.22 -2.91 -0.02 5.61 16 Total: -1.00 -76.71 384.44 3.95 -72.76 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.91 Total: 17.40 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 7.87 Total: 18.04 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -6.82 Total: -137.32 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.04 Total: -19.44 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.71 3.95 -72.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049544357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.045 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds