Wall clock time and date at job start Wed Apr 1 2020 04:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34673 * 125.99054 * 2 1 4 4 N 1.36878 * 106.81775 * 180.12367 * 3 2 1 5 5 C 1.46497 * 126.40025 * 179.84396 * 4 3 2 6 6 C 1.53005 * 109.46924 * 53.23097 * 5 4 3 7 7 C 1.53006 * 109.47136 * 293.23874 * 5 4 3 8 8 C 1.50702 * 109.47546 * 173.23263 * 5 4 3 9 9 O 1.21278 * 119.99829 * 119.35673 * 8 5 4 10 10 N 1.34769 * 119.99959 * 299.35541 * 8 5 4 11 11 C 1.46807 * 119.57858 * 5.00229 * 10 8 5 12 12 C 1.53464 * 107.59003 * 127.92323 * 11 10 8 13 13 C 1.52735 * 108.44155 * 58.08560 * 12 11 10 14 14 C 1.53017 * 110.79889 * 296.22393 * 13 12 11 15 15 H 1.09000 * 112.10139 * 290.71812 * 14 13 12 16 16 C 1.45121 * 119.57555 * 184.97914 * 10 8 5 17 17 H 1.08998 * 109.97511 * 348.09345 * 16 10 8 18 18 C 1.54421 * 111.60392 * 111.37615 * 16 10 8 19 19 C 1.54600 * 102.53593 * 156.35535 * 18 16 10 20 20 N 1.47120 * 107.23822 * 338.70984 * 19 18 16 21 21 C 1.36936 * 125.76624 * 177.25708 * 20 19 18 22 22 H 1.08000 * 120.00391 * 170.79764 * 21 20 19 23 23 C 1.38815 * 119.99889 * 350.79873 * 21 20 19 24 24 N 1.31628 * 119.99823 * 151.47392 * 23 21 20 25 25 Si 1.86795 * 120.00387 * 331.47129 * 23 21 20 26 26 H 1.48494 * 109.47263 * 86.68064 * 25 23 21 27 27 H 1.48503 * 109.47335 * 206.68563 * 25 23 21 28 28 H 1.48503 * 109.46755 * 326.68602 * 25 23 21 29 29 C 1.35046 * 107.20667 * 359.58193 * 4 3 2 30 30 N 1.30501 * 108.70018 * 0.26371 * 29 4 3 31 31 H 1.09003 * 109.46586 * 270.32497 * 1 2 3 32 32 H 1.08998 * 109.47484 * 30.32690 * 1 2 3 33 33 H 1.09001 * 109.47263 * 150.33138 * 1 2 3 34 34 H 1.08001 * 126.58976 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47177 * 185.50479 * 6 5 4 36 36 H 1.08998 * 109.47691 * 305.51105 * 6 5 4 37 37 H 1.09008 * 109.46961 * 65.51197 * 6 5 4 38 38 H 1.09003 * 109.46756 * 304.83925 * 7 5 4 39 39 H 1.08997 * 109.46968 * 64.83464 * 7 5 4 40 40 H 1.09000 * 109.46739 * 184.84410 * 7 5 4 41 41 H 1.09004 * 109.83023 * 247.44351 * 11 10 8 42 42 H 1.08997 * 109.83205 * 8.40036 * 11 10 8 43 43 H 1.09006 * 109.63973 * 177.76368 * 12 11 10 44 44 H 1.08992 * 109.64739 * 298.18139 * 12 11 10 45 45 H 1.08998 * 109.20861 * 175.88781 * 13 12 11 46 46 H 1.08996 * 109.21408 * 56.56329 * 13 12 11 47 47 H 1.08998 * 110.81516 * 274.82057 * 18 16 10 48 48 H 1.08998 * 110.81632 * 38.34148 * 18 16 10 49 49 H 1.09000 * 110.01759 * 219.22747 * 19 18 16 50 50 H 1.09012 * 109.77118 * 98.04847 * 19 18 16 51 51 H 0.96995 * 120.00030 * 5.02489 * 24 23 21 52 52 H 1.08007 * 125.65082 * 180.30184 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6401 -0.0028 5 6 4.7996 1.4684 -0.0071 6 6 4.7351 2.4704 1.1473 7 6 4.8950 2.2245 -1.3339 8 6 6.0122 0.5889 0.1583 9 8 6.8626 0.5599 -0.7059 10 7 6.1514 -0.1654 1.2664 11 6 5.0668 -0.2084 2.2548 12 6 4.7400 -1.6841 2.5208 13 6 6.0078 -2.3783 3.0143 14 6 7.0893 -2.3681 1.9319 15 1 6.8351 -3.0148 1.0920 16 6 7.3715 -0.9250 1.4671 17 1 7.9580 -0.9372 0.5484 18 6 8.2047 -0.3632 2.6396 19 6 9.0490 -1.5856 3.0674 20 7 8.3560 -2.7872 2.5770 21 6 8.8031 -4.0756 2.7010 22 1 8.1549 -4.8995 2.4413 23 6 10.0895 -4.3227 3.1605 24 7 10.3554 -5.4402 3.8032 25 14 11.4431 -3.0694 2.8668 26 1 11.4357 -2.0669 3.9623 27 1 12.7580 -3.7590 2.8357 28 1 11.2117 -2.3860 1.5689 29 6 3.5450 -0.7095 0.0050 30 7 2.2952 -1.0853 0.0066 31 1 -0.3632 0.0058 1.0277 32 1 -0.3634 0.8870 -0.5189 33 1 -0.3634 -0.8929 -0.5087 34 1 1.9751 2.1201 -0.0004 35 1 5.5852 3.1500 1.0865 36 1 3.8086 3.0408 1.0822 37 1 4.7658 1.9343 2.0960 38 1 4.8543 1.5147 -2.1602 39 1 4.0628 2.9237 -1.4142 40 1 5.8360 2.7733 -1.3724 41 1 5.3893 0.2714 3.1789 42 1 4.1869 0.3000 1.8606 43 1 3.9631 -1.7558 3.2821 44 1 4.3954 -2.1548 1.6002 45 1 5.7728 -3.4098 3.2768 46 1 6.3799 -1.8599 3.8979 47 1 8.8435 0.4538 2.3043 48 1 7.5575 -0.0404 3.4551 49 1 9.1298 -1.6215 4.1538 50 1 10.0418 -1.5223 2.6216 51 1 9.6721 -6.1228 3.8922 52 1 4.4005 -1.3687 0.0097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049544358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:25 Heat of formation + Delta-G solvation = 87.844424 kcal Electronic energy + Delta-G solvation = -33432.241440 eV Core-core repulsion = 29434.922542 eV Total energy + Delta-G solvation = -3997.318898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.90752 -40.66031 -38.69638 -36.27765 -35.55548 -32.73865 -32.42387 -32.09009 -30.73406 -29.54494 -29.00524 -27.85354 -27.12674 -25.42370 -24.04424 -23.24017 -22.28213 -22.13356 -20.70754 -20.35014 -19.43129 -18.86315 -17.94602 -17.41723 -16.69956 -15.95651 -15.76417 -15.52027 -15.02352 -14.83516 -14.38965 -14.31636 -14.07048 -13.89380 -13.66109 -13.49305 -13.38822 -13.12694 -13.07208 -12.91976 -12.67679 -12.60583 -12.53130 -12.47607 -12.20934 -12.03650 -11.86139 -11.79993 -11.36476 -11.22321 -11.07432 -10.68698 -10.62047 -10.38670 -10.12773 -10.08929 -9.97500 -9.68003 -9.57853 -9.20083 -8.65267 -8.48250 -8.41909 -7.17600 -6.35892 -3.20026 1.80340 1.86263 2.64147 2.74908 2.95960 3.40141 3.51447 3.67730 3.76470 4.20522 4.28950 4.42573 4.55845 4.57489 4.66114 4.90089 4.95484 4.97662 4.98816 5.06715 5.10284 5.13017 5.15543 5.22298 5.24533 5.30608 5.35522 5.47345 5.48931 5.52125 5.53645 5.66686 5.71329 5.75175 5.80974 5.81278 5.90122 5.90424 6.03097 6.10638 6.17531 6.36705 6.41886 6.47717 6.57130 6.63887 6.67967 6.89345 6.92346 7.18241 7.63087 7.83470 7.92433 8.31043 9.00411 9.54848 10.21385 11.12179 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.003541 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.560752 B = 7905.089039 C = 8775.694486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.001 4.001 3 C -0.055 4.055 4 N -0.452 5.452 5 C 0.145 3.855 6 C -0.168 4.168 7 C -0.141 4.141 8 C 0.510 3.490 9 O -0.518 6.518 10 N -0.583 5.583 11 C 0.086 3.914 12 C -0.135 4.135 13 C -0.126 4.126 14 C 0.156 3.844 15 H 0.066 0.934 16 C 0.123 3.877 17 H 0.107 0.893 18 C -0.135 4.135 19 C 0.120 3.880 20 N -0.601 5.601 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.017 4.017 24 N -0.914 5.914 25 Si 1.065 2.935 26 H -0.294 1.294 27 H -0.299 1.299 28 H -0.292 1.292 29 C 0.193 3.807 30 N -0.484 5.484 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.172 0.828 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.042 0.958 50 H 0.031 0.969 51 H 0.264 0.736 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.621 19.551 -5.272 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C -0.186 4.186 4 N -0.138 5.138 5 C 0.058 3.942 6 C -0.226 4.226 7 C -0.199 4.199 8 C 0.294 3.706 9 O -0.392 6.392 10 N -0.315 5.315 11 C -0.036 4.036 12 C -0.174 4.174 13 C -0.166 4.166 14 C 0.048 3.952 15 H 0.084 0.916 16 C 0.019 3.981 17 H 0.125 0.875 18 C -0.174 4.174 19 C -0.005 4.005 20 N -0.326 5.326 21 C -0.457 4.457 22 H 0.096 0.904 23 C -0.218 4.218 24 N -0.555 5.555 25 Si 0.899 3.101 26 H -0.222 1.222 27 H -0.227 1.227 28 H -0.220 1.220 29 C -0.089 4.089 30 N -0.202 5.202 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.189 0.811 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.074 0.926 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.636 18.993 -5.400 25.187 hybrid contribution -1.158 0.525 -0.220 1.290 sum -16.794 19.518 -5.619 26.354 Atomic orbital electron populations 1.20004 0.87735 1.02500 1.02100 1.20750 0.96478 0.88486 1.07231 1.22295 0.82534 1.00409 1.13371 1.45739 1.05831 1.07408 1.54802 1.21121 0.81780 0.91425 0.99923 1.22460 1.04393 0.98620 0.97094 1.21987 1.03601 1.00328 0.93958 1.20172 0.87473 0.80609 0.82308 1.90757 1.43202 1.64553 1.40694 1.47717 1.18163 1.44989 1.20615 1.22434 0.89700 0.99067 0.92427 1.22051 0.98876 0.94063 1.02365 1.22031 0.93947 1.00916 0.99678 1.21419 0.88420 0.91400 0.93941 0.91554 1.21985 0.84159 0.91967 0.99948 0.87503 1.22803 0.98631 0.98233 0.97749 1.21662 0.94931 0.85888 0.98042 1.45064 1.19823 1.02388 1.65372 1.19988 0.98822 0.80992 1.45913 0.90431 1.25737 0.97340 1.02043 0.96684 1.70928 1.39238 1.09837 1.35457 0.83760 0.76011 0.74234 0.76087 1.22206 1.22748 1.22017 1.25204 0.97401 0.81821 1.04479 1.70273 1.00017 1.30153 1.19766 0.91492 0.91565 0.91234 0.81073 0.89698 0.90298 0.90053 0.90974 0.91095 0.89641 0.90983 0.88729 0.90961 0.90859 0.91644 0.91930 0.91215 0.91121 0.94006 0.95151 0.92598 0.78044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.01 0.38 -0.14 16 2 C 0.00 -0.01 7.09 -82.85 -0.59 -0.59 16 3 C -0.05 -0.49 10.51 -16.56 -0.17 -0.67 16 4 N -0.45 -4.61 1.43 -105.81 -0.15 -4.77 16 5 C 0.15 1.40 0.79 -132.97 -0.11 1.29 16 6 C -0.17 -1.18 8.11 37.16 0.30 -0.88 16 7 C -0.14 -1.23 7.95 37.16 0.30 -0.93 16 8 C 0.51 6.74 5.51 -10.99 -0.06 6.67 16 9 O -0.52 -8.60 15.25 5.56 0.08 -8.52 16 10 N -0.58 -7.73 2.19 -165.02 -0.36 -8.09 16 11 C 0.09 0.97 3.30 -3.63 -0.01 0.96 16 12 C -0.13 -1.73 5.58 -26.63 -0.15 -1.88 16 13 C -0.13 -2.08 5.10 -26.86 -0.14 -2.22 16 14 C 0.16 2.98 3.60 -66.35 -0.24 2.74 16 15 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 16 C 0.12 2.06 3.12 -67.29 -0.21 1.85 16 17 H 0.11 2.03 6.93 -51.93 -0.36 1.67 16 18 C -0.14 -2.22 6.08 -25.15 -0.15 -2.37 16 19 C 0.12 2.55 4.86 -2.86 -0.01 2.54 16 20 N -0.60 -14.16 2.81 -162.17 -0.46 -14.61 16 21 C -0.33 -9.22 10.43 -15.06 -0.16 -9.37 16 22 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 23 C -0.02 -0.49 5.42 -17.43 -0.09 -0.58 16 24 N -0.91 -28.34 13.70 55.49 0.76 -27.58 16 25 Si 1.07 26.79 24.74 -169.99 -4.20 22.59 16 26 H -0.29 -6.96 6.89 56.52 0.39 -6.57 16 27 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.29 -7.10 6.74 56.52 0.38 -6.72 16 29 C 0.19 2.43 7.86 -90.37 -0.71 1.72 16 30 N -0.48 -6.52 11.25 -10.87 -0.12 -6.64 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.17 1.00 7.88 -52.49 -0.41 0.58 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.41 7.52 -51.93 -0.39 0.02 16 37 H 0.08 0.61 5.01 -51.92 -0.26 0.35 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.75 7.97 -51.93 -0.41 0.33 16 41 H 0.07 0.75 7.31 -51.93 -0.38 0.38 16 42 H 0.09 0.97 3.24 -51.93 -0.17 0.80 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.99 5.45 -51.93 -0.28 0.71 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.06 1.07 7.11 -51.93 -0.37 0.70 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 1.03 6.80 -51.93 -0.35 0.68 16 49 H 0.04 0.92 8.05 -51.93 -0.42 0.50 16 50 H 0.03 0.70 3.53 -51.92 -0.18 0.52 16 51 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 52 H 0.20 2.75 5.36 -52.48 -0.28 2.47 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -32.94 378.24 -8.69 -41.63 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.11 Total: 2.16 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.83 Total: -1.87 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.33 Total: -61.69 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -4.20 Total: 22.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.94 -8.69 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049544358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.476 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds