Wall clock time and date at job start Wed Apr 1 2020 04:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34673 * 125.99054 * 2 1 4 4 N 1.36878 * 106.81775 * 180.12367 * 3 2 1 5 5 C 1.46497 * 126.40025 * 179.84396 * 4 3 2 6 6 C 1.53005 * 109.46924 * 53.23097 * 5 4 3 7 7 C 1.53006 * 109.47136 * 293.23874 * 5 4 3 8 8 C 1.50702 * 109.47546 * 173.23263 * 5 4 3 9 9 O 1.21278 * 119.99829 * 119.35673 * 8 5 4 10 10 N 1.34769 * 119.99959 * 299.35541 * 8 5 4 11 11 C 1.46807 * 119.57858 * 5.00229 * 10 8 5 12 12 C 1.53464 * 107.59003 * 127.92323 * 11 10 8 13 13 C 1.52735 * 108.44155 * 58.08560 * 12 11 10 14 14 C 1.53017 * 110.79889 * 296.22393 * 13 12 11 15 15 H 1.09000 * 112.10139 * 290.71812 * 14 13 12 16 16 C 1.45121 * 119.57555 * 184.97914 * 10 8 5 17 17 H 1.08998 * 109.97511 * 348.09345 * 16 10 8 18 18 C 1.54421 * 111.60392 * 111.37615 * 16 10 8 19 19 C 1.54600 * 102.53593 * 156.35535 * 18 16 10 20 20 N 1.47120 * 107.23822 * 338.70984 * 19 18 16 21 21 C 1.36936 * 125.76624 * 177.25708 * 20 19 18 22 22 H 1.08000 * 120.00391 * 170.79764 * 21 20 19 23 23 C 1.38815 * 119.99889 * 350.79873 * 21 20 19 24 24 N 1.31628 * 119.99823 * 151.47392 * 23 21 20 25 25 Si 1.86795 * 120.00387 * 331.47129 * 23 21 20 26 26 H 1.48494 * 109.47263 * 86.68064 * 25 23 21 27 27 H 1.48503 * 109.47335 * 206.68563 * 25 23 21 28 28 H 1.48503 * 109.46755 * 326.68602 * 25 23 21 29 29 C 1.35046 * 107.20667 * 359.58193 * 4 3 2 30 30 N 1.30501 * 108.70018 * 0.26371 * 29 4 3 31 31 H 1.09003 * 109.46586 * 270.32497 * 1 2 3 32 32 H 1.08998 * 109.47484 * 30.32690 * 1 2 3 33 33 H 1.09001 * 109.47263 * 150.33138 * 1 2 3 34 34 H 1.08001 * 126.58976 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47177 * 185.50479 * 6 5 4 36 36 H 1.08998 * 109.47691 * 305.51105 * 6 5 4 37 37 H 1.09008 * 109.46961 * 65.51197 * 6 5 4 38 38 H 1.09003 * 109.46756 * 304.83925 * 7 5 4 39 39 H 1.08997 * 109.46968 * 64.83464 * 7 5 4 40 40 H 1.09000 * 109.46739 * 184.84410 * 7 5 4 41 41 H 1.09004 * 109.83023 * 247.44351 * 11 10 8 42 42 H 1.08997 * 109.83205 * 8.40036 * 11 10 8 43 43 H 1.09006 * 109.63973 * 177.76368 * 12 11 10 44 44 H 1.08992 * 109.64739 * 298.18139 * 12 11 10 45 45 H 1.08998 * 109.20861 * 175.88781 * 13 12 11 46 46 H 1.08996 * 109.21408 * 56.56329 * 13 12 11 47 47 H 1.08998 * 110.81516 * 274.82057 * 18 16 10 48 48 H 1.08998 * 110.81632 * 38.34148 * 18 16 10 49 49 H 1.09000 * 110.01759 * 219.22747 * 19 18 16 50 50 H 1.09012 * 109.77118 * 98.04847 * 19 18 16 51 51 H 0.96995 * 120.00030 * 5.02489 * 24 23 21 52 52 H 1.08007 * 125.65082 * 180.30184 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6401 -0.0028 5 6 4.7996 1.4684 -0.0071 6 6 4.7351 2.4704 1.1473 7 6 4.8950 2.2245 -1.3339 8 6 6.0122 0.5889 0.1583 9 8 6.8626 0.5599 -0.7059 10 7 6.1514 -0.1654 1.2664 11 6 5.0668 -0.2084 2.2548 12 6 4.7400 -1.6841 2.5208 13 6 6.0078 -2.3783 3.0143 14 6 7.0893 -2.3681 1.9319 15 1 6.8351 -3.0148 1.0920 16 6 7.3715 -0.9250 1.4671 17 1 7.9580 -0.9372 0.5484 18 6 8.2047 -0.3632 2.6396 19 6 9.0490 -1.5856 3.0674 20 7 8.3560 -2.7872 2.5770 21 6 8.8031 -4.0756 2.7010 22 1 8.1549 -4.8995 2.4413 23 6 10.0895 -4.3227 3.1605 24 7 10.3554 -5.4402 3.8032 25 14 11.4431 -3.0694 2.8668 26 1 11.4357 -2.0669 3.9623 27 1 12.7580 -3.7590 2.8357 28 1 11.2117 -2.3860 1.5689 29 6 3.5450 -0.7095 0.0050 30 7 2.2952 -1.0853 0.0066 31 1 -0.3632 0.0058 1.0277 32 1 -0.3634 0.8870 -0.5189 33 1 -0.3634 -0.8929 -0.5087 34 1 1.9751 2.1201 -0.0004 35 1 5.5852 3.1500 1.0865 36 1 3.8086 3.0408 1.0822 37 1 4.7658 1.9343 2.0960 38 1 4.8543 1.5147 -2.1602 39 1 4.0628 2.9237 -1.4142 40 1 5.8360 2.7733 -1.3724 41 1 5.3893 0.2714 3.1789 42 1 4.1869 0.3000 1.8606 43 1 3.9631 -1.7558 3.2821 44 1 4.3954 -2.1548 1.6002 45 1 5.7728 -3.4098 3.2768 46 1 6.3799 -1.8599 3.8979 47 1 8.8435 0.4538 2.3043 48 1 7.5575 -0.0404 3.4551 49 1 9.1298 -1.6215 4.1538 50 1 10.0418 -1.5223 2.6216 51 1 9.6721 -6.1228 3.8922 52 1 4.4005 -1.3687 0.0097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049544358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:24 Heat of formation + Delta-G solvation = 67.319397 kcal Electronic energy + Delta-G solvation = -33433.131472 eV Core-core repulsion = 29434.922542 eV Total energy + Delta-G solvation = -3998.208930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.75751 -41.79312 -40.01876 -37.32951 -36.80370 -34.49062 -33.96063 -32.77584 -31.63608 -31.20990 -30.37478 -28.47127 -27.89604 -26.63540 -25.78811 -24.26889 -23.44360 -23.25289 -22.38951 -21.11296 -20.59445 -20.03997 -19.43336 -18.93899 -17.72761 -17.39750 -16.83810 -16.73334 -15.98243 -15.90770 -15.73897 -15.69771 -15.42293 -15.06169 -14.76837 -14.71786 -14.46378 -14.30004 -14.04585 -13.83700 -13.69858 -13.48891 -13.40106 -13.30864 -13.22195 -13.09356 -13.04155 -12.83046 -12.80635 -12.67328 -12.41138 -12.26704 -11.98932 -11.85682 -11.75056 -11.40857 -11.19315 -11.04792 -10.88722 -10.57320 -10.53041 -9.86936 -9.22959 -9.21230 -8.66557 -5.43427 0.89930 1.04644 1.35553 1.48978 1.56094 1.67602 1.87873 2.13076 2.47260 2.84109 2.96510 3.27515 3.49986 3.55922 3.62612 3.64123 3.70377 3.80312 3.86560 3.90575 3.90872 4.08886 4.26600 4.33363 4.37573 4.44011 4.45636 4.55236 4.56256 4.60151 4.61627 4.64072 4.68495 4.76171 4.81418 4.91306 4.98178 5.00567 5.03167 5.05488 5.08957 5.10824 5.19005 5.21318 5.25930 5.33037 5.44651 5.56115 5.87795 6.06301 6.07808 6.11608 6.75927 6.79884 7.11887 7.42557 8.08902 8.81636 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.003541 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.560752 B = 7905.089039 C = 8775.694486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.028 4.028 3 C -0.030 4.030 4 N -0.446 5.446 5 C 0.152 3.848 6 C -0.166 4.166 7 C -0.138 4.138 8 C 0.507 3.493 9 O -0.557 6.557 10 N -0.580 5.580 11 C 0.093 3.907 12 C -0.125 4.125 13 C -0.113 4.113 14 C 0.151 3.849 15 H 0.040 0.960 16 C 0.139 3.861 17 H 0.081 0.919 18 C -0.118 4.118 19 C 0.110 3.890 20 N -0.621 5.621 21 C -0.316 4.316 22 H 0.043 0.957 23 C -0.073 4.073 24 N -0.950 5.950 25 Si 1.108 2.892 26 H -0.266 1.266 27 H -0.306 1.306 28 H -0.283 1.283 29 C 0.170 3.830 30 N -0.515 5.515 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.216 0.784 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.037 0.963 50 H 0.022 0.978 51 H 0.249 0.751 52 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.862 24.955 -4.884 32.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.156 4.156 3 C -0.161 4.161 4 N -0.132 5.132 5 C 0.065 3.935 6 C -0.223 4.223 7 C -0.196 4.196 8 C 0.294 3.706 9 O -0.434 6.434 10 N -0.311 5.311 11 C -0.028 4.028 12 C -0.163 4.163 13 C -0.152 4.152 14 C 0.044 3.956 15 H 0.058 0.942 16 C 0.034 3.966 17 H 0.099 0.901 18 C -0.157 4.157 19 C -0.014 4.014 20 N -0.348 5.348 21 C -0.445 4.445 22 H 0.061 0.939 23 C -0.267 4.267 24 N -0.594 5.594 25 Si 0.937 3.063 26 H -0.192 1.192 27 H -0.235 1.235 28 H -0.210 1.210 29 C -0.111 4.111 30 N -0.235 5.235 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.232 0.768 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.055 0.945 50 H 0.039 0.961 51 H 0.058 0.942 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.941 24.440 -5.012 30.730 hybrid contribution -0.618 -1.239 -0.453 1.457 sum -18.559 23.201 -5.465 30.209 Atomic orbital electron populations 1.20069 0.86051 1.03098 1.02808 1.21299 0.97772 0.88376 1.08155 1.22902 0.81136 1.01761 1.10308 1.45787 1.06652 1.06580 1.54227 1.21185 0.79564 0.90731 1.01987 1.22539 1.06592 0.97987 0.95213 1.22016 1.05101 1.00140 0.92375 1.20881 0.88275 0.80290 0.81141 1.90745 1.45056 1.65789 1.41779 1.47633 1.17418 1.44519 1.21484 1.22582 0.89663 0.97744 0.92857 1.21955 0.97077 0.95020 1.02274 1.21812 0.94882 0.99894 0.98661 1.21556 0.87361 0.92874 0.93831 0.94154 1.21443 0.85556 0.90643 0.98982 0.90110 1.22754 0.98422 0.96465 0.98046 1.21813 0.95328 0.86728 0.97548 1.45103 1.21473 1.01791 1.66390 1.19832 0.98133 0.82566 1.43925 0.93915 1.26905 0.99688 1.03262 0.96884 1.71033 1.38978 1.10819 1.38522 0.83184 0.73010 0.72937 0.77210 1.19248 1.23507 1.20984 1.24770 0.96741 0.82819 1.06813 1.70221 1.00777 1.32122 1.20330 0.90712 0.88947 0.92665 0.76782 0.88627 0.87208 0.90121 0.93456 0.87703 0.89630 0.88649 0.86837 0.89043 0.91928 0.94498 0.91646 0.88931 0.88299 0.94548 0.96105 0.94154 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.42 71.24 0.74 -0.06 16 2 C -0.03 -0.52 7.09 41.39 0.29 -0.23 16 3 C -0.03 -0.39 10.51 83.09 0.87 0.48 16 4 N -0.45 -7.68 1.43 -488.69 -0.70 -8.38 16 5 C 0.15 2.39 0.79 2.86 0.00 2.39 16 6 C -0.17 -1.38 8.11 71.98 0.58 -0.79 16 7 C -0.14 -1.95 7.95 71.98 0.57 -1.37 16 8 C 0.51 12.51 5.51 87.66 0.48 12.99 16 9 O -0.56 -18.26 15.25 -3.02 -0.05 -18.30 16 10 N -0.58 -14.33 2.19 -794.38 -1.74 -16.07 16 11 C 0.09 1.80 3.30 86.48 0.29 2.09 16 12 C -0.12 -3.06 5.58 30.66 0.17 -2.89 16 13 C -0.11 -3.77 5.10 30.51 0.16 -3.61 16 14 C 0.15 5.95 3.60 45.08 0.16 6.11 16 15 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 16 C 0.14 4.56 3.12 46.14 0.14 4.71 16 17 H 0.08 3.11 6.93 -2.39 -0.02 3.10 16 18 C -0.12 -3.58 6.08 31.62 0.19 -3.38 16 19 C 0.11 4.59 4.86 86.81 0.42 5.02 16 20 N -0.62 -30.13 2.81 -666.98 -1.87 -32.00 16 21 C -0.32 -18.58 10.43 84.03 0.88 -17.70 16 22 H 0.04 2.74 8.06 -2.91 -0.02 2.71 16 23 C -0.07 -4.38 5.42 84.86 0.46 -3.92 16 24 N -0.95 -61.63 13.70 21.65 0.30 -61.34 16 25 Si 1.11 55.15 24.74 68.60 1.70 56.85 16 26 H -0.27 -11.97 6.89 99.48 0.69 -11.28 16 27 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 28 H -0.28 -13.43 6.74 99.48 0.67 -12.76 16 29 C 0.17 4.12 7.86 180.26 1.42 5.53 16 30 N -0.52 -13.39 11.25 -188.30 -2.12 -15.51 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.22 0.92 7.88 -2.91 -0.02 0.89 16 35 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.11 0.31 7.52 -2.39 -0.02 0.29 16 37 H 0.08 0.72 5.01 -2.38 -0.01 0.71 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.23 7.97 -2.39 -0.02 1.21 16 41 H 0.10 1.51 7.31 -2.39 -0.02 1.49 16 42 H 0.11 1.88 3.24 -2.39 -0.01 1.87 16 43 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 44 H 0.06 1.72 5.45 -2.39 -0.01 1.71 16 45 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 2.15 7.11 -2.39 -0.02 2.13 16 47 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.10 2.46 6.80 -2.39 -0.02 2.44 16 49 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 50 H 0.02 0.94 3.53 -2.38 -0.01 0.93 16 51 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 52 H 0.18 5.08 5.36 -2.91 -0.02 5.07 16 Total: -1.00 -78.76 378.24 4.19 -74.57 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.83 Total: 14.83 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 7.84 Total: 5.35 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.13 Total: -133.29 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 55.15 SS G_CDS: 1.70 Total: 56.85 kcal Total: -78.76 4.19 -74.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049544358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.890 kcal (2) G-P(sol) polarization free energy of solvation -78.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds