Wall clock time and date at job start Wed Apr 1 2020 04:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34675 * 125.98858 * 2 1 4 4 N 1.36878 * 106.81200 * 180.12338 * 3 2 1 5 5 C 1.46506 * 126.39438 * 179.84215 * 4 3 2 6 6 C 1.52995 * 109.46913 * 67.54810 * 5 4 3 7 7 C 1.52997 * 109.47149 * 307.54633 * 5 4 3 8 8 C 1.50706 * 109.46983 * 187.54453 * 5 4 3 9 9 O 1.21277 * 119.99994 * 243.28897 * 8 5 4 10 10 N 1.34773 * 119.99947 * 63.29378 * 8 5 4 11 11 C 1.46802 * 119.57605 * 354.41608 * 10 8 5 12 12 C 1.53463 * 107.59859 * 232.06482 * 11 10 8 13 13 C 1.52744 * 108.43762 * 301.92100 * 12 11 10 14 14 C 1.53015 * 110.79499 * 63.77695 * 13 12 11 15 15 H 1.09000 * 111.37999 * 69.71550 * 14 13 12 16 16 C 1.45925 * 118.89152 * 175.02160 * 10 8 5 17 17 H 1.09003 * 111.00247 * 12.41066 * 16 10 8 18 18 C 1.54421 * 110.92556 * 248.86752 * 16 10 8 19 19 C 1.54541 * 102.35983 * 204.05682 * 18 16 10 20 20 N 1.47115 * 107.26826 * 22.02806 * 19 18 16 21 21 C 1.36941 * 125.76764 * 182.47984 * 20 19 18 22 22 H 1.08000 * 120.00174 * 179.68885 * 21 20 19 23 23 C 1.38818 * 119.99509 * 359.69169 * 21 20 19 24 24 N 1.31620 * 120.00356 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99619 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46812 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.46734 * 299.99371 * 25 23 21 28 28 H 1.48495 * 109.47169 * 59.99446 * 25 23 21 29 29 C 1.35049 * 107.20777 * 359.57657 * 4 3 2 30 30 N 1.30488 * 108.69812 * 0.26770 * 29 4 3 31 31 H 1.09007 * 109.46604 * 270.33155 * 1 2 3 32 32 H 1.08999 * 109.47099 * 30.32705 * 1 2 3 33 33 H 1.08999 * 109.47525 * 150.33192 * 1 2 3 34 34 H 1.07998 * 126.59234 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47335 * 175.11582 * 6 5 4 36 36 H 1.09000 * 109.46945 * 295.10805 * 6 5 4 37 37 H 1.09003 * 109.47719 * 55.11219 * 6 5 4 38 38 H 1.09003 * 109.46886 * 306.00062 * 7 5 4 39 39 H 1.08993 * 109.47062 * 65.99758 * 7 5 4 40 40 H 1.08998 * 109.46864 * 186.00382 * 7 5 4 41 41 H 1.08998 * 109.83315 * 112.53983 * 11 10 8 42 42 H 1.09004 * 109.83214 * 351.58556 * 11 10 8 43 43 H 1.09005 * 109.64261 * 182.24037 * 12 11 10 44 44 H 1.08993 * 109.64993 * 61.60768 * 12 11 10 45 45 H 1.09003 * 109.21278 * 303.44241 * 13 12 11 46 46 H 1.09000 * 109.21360 * 184.11766 * 13 12 11 47 47 H 1.08998 * 110.81202 * 322.50396 * 18 16 10 48 48 H 1.09001 * 110.80712 * 86.02275 * 18 16 10 49 49 H 1.09004 * 109.98639 * 262.54552 * 19 18 16 50 50 H 1.09004 * 109.76438 * 141.38410 * 19 18 16 51 51 H 0.97001 * 119.99750 * 180.02562 * 24 23 21 52 52 H 1.08004 * 125.64556 * 180.22601 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5912 0.6401 -0.0028 5 6 4.7996 1.4684 -0.0071 6 6 4.9123 2.2129 1.3247 7 6 4.7203 2.4803 -1.1519 8 6 6.0099 0.5903 -0.1957 9 8 6.8479 0.5170 0.6779 10 7 6.1609 -0.1134 -1.3352 11 6 5.0847 -0.1152 -2.3337 12 6 4.7649 -1.5783 -2.6684 13 6 6.0392 -2.2462 -3.1816 14 6 7.1113 -2.2814 -2.0904 15 1 6.8439 -2.9747 -1.2929 16 6 7.3924 -0.8690 -1.5392 17 1 7.9667 -0.9369 -0.6152 18 6 8.2428 -0.2437 -2.6664 19 6 9.0940 -1.4425 -3.1425 20 7 8.3848 -2.6678 -2.7425 21 6 8.8291 -3.9488 -2.9350 22 1 8.2323 -4.7836 -2.5983 23 6 10.0465 -4.1741 -3.5628 24 7 10.7736 -3.1567 -3.9734 25 14 10.6523 -5.9215 -3.8259 26 1 11.9682 -5.8909 -4.5134 27 1 10.7953 -6.5989 -2.5122 28 1 9.6747 -6.6637 -4.6617 29 6 3.5448 -0.7096 0.0051 30 7 2.2952 -1.0852 0.0067 31 1 -0.3633 0.0059 1.0277 32 1 -0.3633 0.8870 -0.5189 33 1 -0.3634 -0.8929 -0.5086 34 1 1.9751 2.1202 -0.0004 35 1 5.8540 2.7610 1.3561 36 1 4.0817 2.9121 1.4215 37 1 4.8815 1.4962 2.1454 38 1 4.5332 1.9552 -2.0887 39 1 3.9088 3.1823 -0.9607 40 1 5.6623 3.0241 -1.2221 41 1 5.4133 0.4065 -3.2325 42 1 4.1998 0.3725 -1.9246 43 1 3.9947 -1.6181 -3.4388 44 1 4.4176 -2.0919 -1.7720 45 1 6.4171 -1.6875 -4.0378 46 1 5.8098 -3.2655 -3.4922 47 1 7.6074 0.1285 -3.4699 48 1 8.8800 0.5498 -2.2759 49 1 10.0766 -1.4122 -2.6715 50 1 9.1993 -1.4122 -4.2270 51 1 11.6241 -3.3143 -4.4124 52 1 4.4004 -1.3687 0.0087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049544360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:29 Heat of formation + Delta-G solvation = 79.855398 kcal Electronic energy + Delta-G solvation = -33271.144251 eV Core-core repulsion = 29273.478922 eV Total energy + Delta-G solvation = -3997.665328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.77277 -40.49743 -38.43420 -36.17681 -35.27649 -32.55156 -32.24510 -32.03382 -30.64959 -29.14126 -28.56381 -27.69605 -27.03932 -25.27063 -24.34983 -23.17136 -22.10384 -22.04461 -20.28542 -20.17318 -19.40532 -18.63981 -17.85015 -16.95682 -16.56643 -15.81156 -15.57366 -14.87783 -14.80341 -14.71285 -14.41996 -14.20130 -14.11955 -13.77509 -13.62002 -13.35466 -13.27062 -12.91942 -12.81654 -12.62298 -12.57094 -12.56404 -12.39668 -12.17062 -12.10297 -11.95332 -11.76726 -11.42340 -11.03844 -10.94611 -10.81535 -10.66603 -10.55971 -10.21507 -10.13777 -10.03653 -9.80522 -9.72805 -9.68150 -9.54970 -8.66132 -8.47133 -8.43315 -6.90576 -5.74254 -3.08570 1.87653 1.95969 2.77861 2.85685 3.01793 3.39984 3.44506 3.45268 3.86082 4.29128 4.38478 4.46260 4.48532 4.63273 4.84328 5.01386 5.05946 5.07101 5.15723 5.19458 5.23708 5.26802 5.30942 5.36236 5.41992 5.49332 5.54816 5.56149 5.58794 5.64853 5.71685 5.76503 5.80888 5.85414 5.94508 6.04862 6.09114 6.11488 6.27016 6.28629 6.40145 6.51187 6.62750 6.63361 6.83360 6.98183 7.00591 7.32334 7.51011 7.55184 7.77888 7.95945 7.98605 8.19961 9.17221 9.76781 10.41764 11.36993 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.003287 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.062509 B = 8515.991480 C = 9341.499462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.002 4.002 3 C -0.054 4.054 4 N -0.449 5.449 5 C 0.144 3.856 6 C -0.140 4.140 7 C -0.169 4.169 8 C 0.508 3.492 9 O -0.520 6.520 10 N -0.582 5.582 11 C 0.091 3.909 12 C -0.134 4.134 13 C -0.128 4.128 14 C 0.156 3.844 15 H 0.059 0.941 16 C 0.129 3.871 17 H 0.107 0.893 18 C -0.151 4.151 19 C 0.181 3.819 20 N -0.597 5.597 21 C -0.228 4.228 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.195 3.805 30 N -0.485 5.485 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.042 0.958 51 H 0.253 0.747 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.591 14.437 5.349 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 C -0.186 4.186 4 N -0.135 5.135 5 C 0.056 3.944 6 C -0.198 4.198 7 C -0.227 4.227 8 C 0.292 3.708 9 O -0.395 6.395 10 N -0.314 5.314 11 C -0.032 4.032 12 C -0.172 4.172 13 C -0.168 4.168 14 C 0.047 3.953 15 H 0.077 0.923 16 C 0.025 3.975 17 H 0.125 0.875 18 C -0.190 4.190 19 C 0.056 3.944 20 N -0.322 5.322 21 C -0.356 4.356 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.569 5.569 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.212 1.212 29 C -0.087 4.087 30 N -0.203 5.203 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.189 0.811 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -17.022 13.539 5.682 22.480 hybrid contribution 0.794 -0.043 -0.355 0.871 sum -16.228 13.496 5.327 21.768 Atomic orbital electron populations 1.19998 0.87796 1.02517 1.01987 1.20736 0.96442 0.88519 1.07382 1.22298 0.82571 1.00371 1.13350 1.45712 1.05827 1.07397 1.54601 1.21141 0.81941 0.91489 0.99793 1.21980 1.03497 1.00387 0.93969 1.22499 1.04407 0.98460 0.97292 1.20145 0.87262 0.80765 0.82620 1.90751 1.43912 1.63575 1.41291 1.47950 1.18579 1.46840 1.18022 1.22367 0.89661 0.98970 0.92163 1.22006 0.98951 0.94426 1.01865 1.22107 0.93940 1.00787 0.99959 1.21349 0.88232 0.92138 0.93552 0.92282 1.22096 0.83370 0.91805 1.00182 0.87543 1.23124 0.98757 0.99879 0.97233 1.21174 0.93352 0.81365 0.98525 1.44696 1.17197 1.02464 1.67809 1.18994 1.01863 0.82072 1.32687 0.90418 1.24791 0.97160 0.97504 1.00762 1.69939 1.13899 1.28296 1.44768 0.86197 0.77887 0.83812 0.77851 1.21633 1.21120 1.21161 1.25085 0.97246 0.81819 1.04542 1.70252 1.00061 1.30172 1.19827 0.91650 0.91548 0.91218 0.81129 0.89708 0.91205 0.90977 0.89816 0.90490 0.89740 0.91065 0.88992 0.91207 0.91157 0.91905 0.91863 0.92180 0.92023 0.93018 0.93952 0.93667 0.78276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.01 0.38 -0.16 16 2 C 0.00 -0.02 7.09 -82.85 -0.59 -0.61 16 3 C -0.05 -0.51 10.68 -16.56 -0.18 -0.69 16 4 N -0.45 -4.81 1.42 -105.82 -0.15 -4.96 16 5 C 0.14 1.48 0.79 -132.97 -0.10 1.37 16 6 C -0.14 -1.31 7.94 37.15 0.30 -1.01 16 7 C -0.17 -1.31 7.89 37.16 0.29 -1.02 16 8 C 0.51 7.07 5.40 -10.98 -0.06 7.01 16 9 O -0.52 -9.03 15.26 5.56 0.08 -8.95 16 10 N -0.58 -8.18 2.29 -164.44 -0.38 -8.55 16 11 C 0.09 1.09 3.40 -3.64 -0.01 1.08 16 12 C -0.13 -1.79 5.74 -26.62 -0.15 -1.94 16 13 C -0.13 -2.18 5.12 -26.85 -0.14 -2.32 16 14 C 0.16 3.05 3.53 -66.35 -0.23 2.82 16 15 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 16 C 0.13 2.27 3.15 -66.87 -0.21 2.06 16 17 H 0.11 2.13 6.98 -51.93 -0.36 1.76 16 18 C -0.15 -2.74 6.09 -25.18 -0.15 -2.89 16 19 C 0.18 4.24 5.21 -2.90 -0.02 4.22 16 20 N -0.60 -14.53 2.91 -162.21 -0.47 -15.00 16 21 C -0.23 -6.18 10.29 -15.06 -0.15 -6.33 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -26.59 10.33 55.49 0.57 -26.01 16 25 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.19 2.54 8.19 -90.38 -0.74 1.80 16 30 N -0.48 -6.69 11.25 -10.87 -0.12 -6.81 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.68 4.91 -51.93 -0.25 0.42 16 39 H 0.08 0.43 8.02 -51.93 -0.42 0.02 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.82 7.45 -51.93 -0.39 0.44 16 42 H 0.09 1.00 3.15 -51.93 -0.16 0.83 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.98 5.80 -51.93 -0.30 0.68 16 45 H 0.06 1.14 7.26 -51.93 -0.38 0.77 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.06 1.01 6.92 -51.93 -0.36 0.65 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.05 1.36 7.32 -51.93 -0.38 0.98 16 50 H 0.04 1.09 7.59 -51.93 -0.39 0.70 16 51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 52 H 0.20 2.79 5.90 -52.48 -0.31 2.48 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -31.32 385.67 -9.86 -41.19 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.32 Total: 3.24 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.87 Total: 3.13 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.55 Total: -61.34 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.32 -9.86 -41.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049544360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.042 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds