Wall clock time and date at job start Wed Apr 1 2020 04:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34671 * 125.99178 * 2 1 4 4 N 1.36879 * 106.81971 * 179.97438 * 3 2 1 5 5 C 1.46495 * 126.39874 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47046 * 292.03453 * 5 4 3 7 7 C 1.53004 * 109.47173 * 52.03754 * 5 4 3 8 8 C 1.50697 * 109.47282 * 172.03839 * 5 4 3 9 9 O 1.21284 * 120.00317 * 116.48637 * 8 5 4 10 10 N 1.34784 * 119.99861 * 296.48777 * 8 5 4 11 11 C 1.47849 * 122.22660 * 5.30501 * 10 8 5 12 12 C 1.52713 * 111.05925 * 127.51331 * 11 10 8 13 13 C 1.53871 * 111.52494 * 48.53284 * 12 11 10 14 14 C 1.51077 * 107.34603 * 303.07521 * 13 12 11 15 15 H 1.09007 * 108.73652 * 309.15210 * 14 13 12 16 16 C 1.45728 * 122.22369 * 185.01578 * 10 8 5 17 17 H 1.09002 * 111.06716 * 119.47387 * 16 10 8 18 18 C 1.53336 * 116.43313 * 350.63350 * 16 10 8 19 19 C 1.55477 * 101.58150 * 206.93118 * 18 16 10 20 20 N 1.45030 * 119.19983 * 183.88682 * 14 13 12 21 21 C 1.36936 * 126.55917 * 28.73508 * 20 14 13 22 22 H 1.08004 * 120.00059 * 0.02562 * 21 20 14 23 23 C 1.38808 * 119.99647 * 180.02562 * 21 20 14 24 24 N 1.31620 * 120.00429 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 119.99797 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46808 * 59.99453 * 25 23 21 27 27 H 1.48498 * 109.47191 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46976 * 299.99966 * 25 23 21 29 29 C 1.35048 * 107.20244 * 0.25857 * 4 3 2 30 30 N 1.30504 * 108.70208 * 359.56295 * 29 4 3 31 31 H 1.09003 * 109.46771 * 90.00337 * 1 2 3 32 32 H 1.08999 * 109.47439 * 210.00409 * 1 2 3 33 33 H 1.08996 * 109.47319 * 330.00831 * 1 2 3 34 34 H 1.07996 * 126.58995 * 359.95556 * 3 2 1 35 35 H 1.09000 * 109.47254 * 178.51329 * 6 5 4 36 36 H 1.09011 * 109.46857 * 58.51651 * 6 5 4 37 37 H 1.08992 * 109.47305 * 298.51934 * 6 5 4 38 38 H 1.09003 * 109.47051 * 307.26819 * 7 5 4 39 39 H 1.08993 * 109.46860 * 67.26602 * 7 5 4 40 40 H 1.08994 * 109.46730 * 187.27390 * 7 5 4 41 41 H 1.09004 * 109.15911 * 247.92063 * 11 10 8 42 42 H 1.09003 * 109.16215 * 7.10419 * 11 10 8 43 43 H 1.08998 * 109.07468 * 169.06530 * 12 11 10 44 44 H 1.09003 * 109.06543 * 288.01082 * 12 11 10 45 45 H 1.09001 * 109.87787 * 62.53081 * 13 12 11 46 46 H 1.08996 * 109.88594 * 183.61592 * 13 12 11 47 47 H 1.08996 * 111.21621 * 88.78095 * 18 16 10 48 48 H 1.08998 * 110.87428 * 324.92315 * 18 16 10 49 49 H 1.08999 * 109.96095 * 263.00666 * 19 18 16 50 50 H 1.08991 * 109.99422 * 141.77995 * 19 18 16 51 51 H 0.96998 * 119.99873 * 179.97438 * 24 23 21 52 52 H 1.08005 * 125.64917 * 179.71932 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 0.0006 5 6 4.7996 1.4684 0.0013 6 6 4.9150 2.2033 -1.3356 7 6 4.7180 2.4885 1.1388 8 6 6.0094 0.5918 0.1986 9 8 6.8472 0.5090 -0.6744 10 7 6.1604 -0.1003 1.3453 11 6 5.1177 -0.1271 2.3931 12 6 4.7657 -1.5617 2.7805 13 6 6.0278 -2.3987 3.0531 14 6 6.8837 -2.3411 1.8095 15 1 6.2676 -2.5989 0.9481 16 6 7.3597 -0.8770 1.6320 17 1 7.8576 -0.5116 2.5302 18 6 8.3517 -1.0527 0.4761 19 6 9.0380 -2.3953 0.8550 20 7 8.1068 -3.1187 1.7558 21 6 8.3550 -4.2950 2.4115 22 1 7.5965 -4.7305 3.0451 23 6 9.5815 -4.9275 2.2619 24 7 10.5057 -4.3970 1.4894 25 14 9.9199 -6.5325 3.1559 26 1 8.9335 -7.5559 2.7260 27 1 11.2913 -7.0003 2.8312 28 1 9.8035 -6.3173 4.6206 29 6 3.5449 -0.7096 -0.0049 30 7 2.2951 -1.0853 0.0007 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.9751 2.1201 -0.0007 35 1 5.7998 2.8398 -1.3252 36 1 4.0276 2.8172 -1.4905 37 1 4.9996 1.4766 -2.1436 38 1 3.7782 3.0361 1.0689 39 1 4.7659 1.9697 2.0961 40 1 5.5517 3.1863 1.0614 41 1 5.4818 0.4022 3.2737 42 1 4.2234 0.3727 2.0208 43 1 4.1475 -1.5469 3.6780 44 1 4.2019 -2.0216 1.9688 45 1 6.5740 -1.9810 3.8988 46 1 5.7495 -3.4313 3.2639 47 1 9.0753 -0.2380 0.4500 48 1 7.8277 -1.1373 -0.4760 49 1 9.9781 -2.2000 1.3709 50 1 9.2220 -2.9861 -0.0422 51 1 11.3629 -4.8388 1.3852 52 1 4.4004 -1.3688 -0.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049544361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:33 Heat of formation + Delta-G solvation = 83.366065 kcal Electronic energy + Delta-G solvation = -33445.674347 eV Core-core repulsion = 29448.161252 eV Total energy + Delta-G solvation = -3997.513094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67543 -40.51960 -38.30637 -36.20156 -35.32437 -32.76483 -32.19662 -31.99683 -30.61242 -29.05463 -28.52869 -27.66060 -27.06062 -25.19535 -24.50350 -23.02066 -21.97698 -21.58200 -20.58135 -20.24769 -19.59187 -19.05278 -17.48150 -16.73643 -16.17326 -15.81444 -15.35622 -14.97199 -14.94193 -14.74813 -14.37511 -14.30217 -13.87824 -13.81727 -13.66318 -13.34904 -13.23889 -12.97883 -12.83290 -12.66623 -12.57337 -12.49897 -12.36259 -12.28487 -12.11426 -11.85450 -11.69984 -11.56526 -11.10639 -10.85731 -10.73408 -10.56683 -10.48564 -10.14812 -10.09982 -9.98787 -9.91985 -9.64611 -9.63285 -9.16162 -8.60212 -8.43388 -8.39615 -6.85537 -5.71228 -3.05804 1.91487 2.00668 2.79299 2.91543 3.05594 3.40930 3.45531 3.46557 3.89423 4.31676 4.39389 4.48676 4.52459 4.68739 4.75701 4.98381 5.03932 5.06814 5.18012 5.19443 5.23059 5.30716 5.32995 5.36368 5.40000 5.50252 5.58316 5.58851 5.60450 5.71317 5.74827 5.79086 5.84295 5.88065 5.94884 6.01746 6.12847 6.17797 6.26660 6.34666 6.46955 6.65070 6.66660 6.68454 6.81673 7.03694 7.08187 7.41059 7.56948 7.62149 7.81365 8.03020 8.04909 8.23200 9.17942 9.81723 10.48815 11.40745 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.003510 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.397503 B = 7976.334744 C = 8878.807113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.002 4.002 3 C -0.056 4.056 4 N -0.449 5.449 5 C 0.142 3.858 6 C -0.140 4.140 7 C -0.169 4.169 8 C 0.516 3.484 9 O -0.508 6.508 10 N -0.589 5.589 11 C 0.097 3.903 12 C -0.132 4.132 13 C -0.115 4.115 14 C 0.162 3.838 15 H 0.015 0.985 16 C 0.113 3.887 17 H 0.083 0.917 18 C -0.134 4.134 19 C 0.173 3.827 20 N -0.591 5.591 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.197 3.803 30 N -0.485 5.485 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.057 0.943 50 H 0.040 0.960 51 H 0.253 0.747 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.362 17.197 -0.141 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 C -0.188 4.188 4 N -0.134 5.134 5 C 0.055 3.945 6 C -0.198 4.198 7 C -0.226 4.226 8 C 0.300 3.700 9 O -0.383 6.383 10 N -0.322 5.322 11 C -0.025 4.025 12 C -0.171 4.171 13 C -0.153 4.153 14 C 0.052 3.948 15 H 0.032 0.968 16 C 0.009 3.991 17 H 0.100 0.900 18 C -0.173 4.173 19 C 0.048 3.952 20 N -0.315 5.315 21 C -0.356 4.356 22 H 0.097 0.903 23 C -0.202 4.202 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.085 4.085 30 N -0.204 5.204 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.188 0.812 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.104 0.896 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.064 0.936 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -15.835 16.258 -0.610 22.704 hybrid contribution 0.625 -0.002 0.564 0.841 sum -15.210 16.257 -0.047 22.263 Atomic orbital electron populations 1.19994 0.87823 1.02457 1.02000 1.20736 0.96432 0.88545 1.07370 1.22268 0.82646 1.00320 1.13588 1.45684 1.05762 1.07400 1.54587 1.21203 0.82092 0.91570 0.99674 1.21979 1.03104 1.00668 0.94095 1.22478 1.04194 0.98451 0.97501 1.20003 0.87217 0.80487 0.82286 1.90759 1.43444 1.62666 1.41390 1.48070 1.18869 1.47692 1.17540 1.22120 0.90934 0.98674 0.90773 1.21967 0.98731 0.94234 1.02150 1.21427 0.94879 1.00072 0.98939 1.20627 0.89740 0.89164 0.95222 0.96752 1.22445 0.85284 0.92035 0.99308 0.89956 1.23031 0.97215 0.99303 0.97702 1.21737 0.92409 0.87223 0.93784 1.44063 1.10872 1.22999 1.53586 1.18943 0.98558 0.96399 1.21706 0.90344 1.24799 0.96407 0.99082 0.99931 1.69929 1.05865 1.39686 1.41237 0.86224 0.77165 0.83324 0.79193 1.21136 1.21617 1.21174 1.25108 0.97238 0.81807 1.04388 1.70274 1.00091 1.30134 1.19861 0.91643 0.91229 0.91592 0.81183 0.89876 0.91280 0.90781 0.90484 0.90052 0.89808 0.91337 0.89562 0.90832 0.90996 0.91781 0.91197 0.92084 0.89644 0.92517 0.94157 0.93650 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.42 36.01 0.38 -0.18 16 2 C 0.00 -0.02 7.09 -82.85 -0.59 -0.61 16 3 C -0.06 -0.56 10.43 -16.56 -0.17 -0.73 16 4 N -0.45 -5.02 1.50 -105.82 -0.16 -5.18 16 5 C 0.14 1.50 0.79 -132.97 -0.10 1.39 16 6 C -0.14 -1.35 7.95 37.16 0.30 -1.06 16 7 C -0.17 -1.30 8.12 37.16 0.30 -1.00 16 8 C 0.52 7.33 5.42 -10.98 -0.06 7.27 16 9 O -0.51 -8.85 12.70 5.55 0.07 -8.78 16 10 N -0.59 -8.43 2.46 -164.37 -0.40 -8.83 16 11 C 0.10 1.15 3.54 -3.45 -0.01 1.14 16 12 C -0.13 -1.74 5.76 -26.42 -0.15 -1.89 16 13 C -0.11 -1.93 5.45 -27.25 -0.15 -2.08 16 14 C 0.16 3.26 2.57 -68.64 -0.18 3.09 16 15 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 16 C 0.11 2.02 3.28 -67.13 -0.22 1.80 16 17 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 18 C -0.13 -2.71 5.12 -25.24 -0.13 -2.84 16 19 C 0.17 4.26 5.47 -1.69 -0.01 4.25 16 20 N -0.59 -14.82 3.35 -163.60 -0.55 -15.37 16 21 C -0.23 -6.22 9.94 -15.06 -0.15 -6.37 16 22 H 0.08 2.06 7.31 -52.48 -0.38 1.67 16 23 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -27.00 10.46 55.49 0.58 -26.42 16 25 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.20 2.73 8.17 -90.37 -0.74 1.99 16 30 N -0.49 -7.06 11.25 -10.87 -0.12 -7.19 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.17 1.12 7.82 -52.49 -0.41 0.71 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.51 8.07 -51.92 -0.42 0.09 16 37 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 38 H 0.08 0.45 7.40 -51.93 -0.38 0.07 16 39 H 0.08 0.66 4.79 -51.93 -0.25 0.41 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.72 7.97 -51.93 -0.41 0.30 16 42 H 0.09 0.93 3.67 -51.93 -0.19 0.74 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.03 6.08 -51.93 -0.32 0.72 16 45 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 46 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.09 1.81 6.04 -51.93 -0.31 1.50 16 49 H 0.06 1.53 7.19 -51.93 -0.37 1.15 16 50 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 51 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 52 H 0.20 3.09 6.45 -52.48 -0.34 2.75 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -31.95 383.53 -9.98 -41.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.37 Total: 3.12 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.78 Total: 3.93 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.65 Total: -62.99 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.95 -9.98 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049544361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.298 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds