Wall clock time and date at job start Wed Apr 1 2020 04:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34671 * 125.99178 * 2 1 4 4 N 1.36879 * 106.81971 * 179.97438 * 3 2 1 5 5 C 1.46495 * 126.39874 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47046 * 292.03453 * 5 4 3 7 7 C 1.53004 * 109.47173 * 52.03754 * 5 4 3 8 8 C 1.50697 * 109.47282 * 172.03839 * 5 4 3 9 9 O 1.21284 * 120.00317 * 116.48637 * 8 5 4 10 10 N 1.34784 * 119.99861 * 296.48777 * 8 5 4 11 11 C 1.47849 * 122.22660 * 5.30501 * 10 8 5 12 12 C 1.52713 * 111.05925 * 127.51331 * 11 10 8 13 13 C 1.53871 * 111.52494 * 48.53284 * 12 11 10 14 14 C 1.51077 * 107.34603 * 303.07521 * 13 12 11 15 15 H 1.09007 * 108.73652 * 309.15210 * 14 13 12 16 16 C 1.45728 * 122.22369 * 185.01578 * 10 8 5 17 17 H 1.09002 * 111.06716 * 119.47387 * 16 10 8 18 18 C 1.53336 * 116.43313 * 350.63350 * 16 10 8 19 19 C 1.55477 * 101.58150 * 206.93118 * 18 16 10 20 20 N 1.45030 * 119.19983 * 183.88682 * 14 13 12 21 21 C 1.36936 * 126.55917 * 28.73508 * 20 14 13 22 22 H 1.08004 * 120.00059 * 0.02562 * 21 20 14 23 23 C 1.38808 * 119.99647 * 180.02562 * 21 20 14 24 24 N 1.31620 * 120.00429 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 119.99797 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46808 * 59.99453 * 25 23 21 27 27 H 1.48498 * 109.47191 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46976 * 299.99966 * 25 23 21 29 29 C 1.35048 * 107.20244 * 0.25857 * 4 3 2 30 30 N 1.30504 * 108.70208 * 359.56295 * 29 4 3 31 31 H 1.09003 * 109.46771 * 90.00337 * 1 2 3 32 32 H 1.08999 * 109.47439 * 210.00409 * 1 2 3 33 33 H 1.08996 * 109.47319 * 330.00831 * 1 2 3 34 34 H 1.07996 * 126.58995 * 359.95556 * 3 2 1 35 35 H 1.09000 * 109.47254 * 178.51329 * 6 5 4 36 36 H 1.09011 * 109.46857 * 58.51651 * 6 5 4 37 37 H 1.08992 * 109.47305 * 298.51934 * 6 5 4 38 38 H 1.09003 * 109.47051 * 307.26819 * 7 5 4 39 39 H 1.08993 * 109.46860 * 67.26602 * 7 5 4 40 40 H 1.08994 * 109.46730 * 187.27390 * 7 5 4 41 41 H 1.09004 * 109.15911 * 247.92063 * 11 10 8 42 42 H 1.09003 * 109.16215 * 7.10419 * 11 10 8 43 43 H 1.08998 * 109.07468 * 169.06530 * 12 11 10 44 44 H 1.09003 * 109.06543 * 288.01082 * 12 11 10 45 45 H 1.09001 * 109.87787 * 62.53081 * 13 12 11 46 46 H 1.08996 * 109.88594 * 183.61592 * 13 12 11 47 47 H 1.08996 * 111.21621 * 88.78095 * 18 16 10 48 48 H 1.08998 * 110.87428 * 324.92315 * 18 16 10 49 49 H 1.08999 * 109.96095 * 263.00666 * 19 18 16 50 50 H 1.08991 * 109.99422 * 141.77995 * 19 18 16 51 51 H 0.96998 * 119.99873 * 179.97438 * 24 23 21 52 52 H 1.08005 * 125.64917 * 179.71932 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 0.0006 5 6 4.7996 1.4684 0.0013 6 6 4.9150 2.2033 -1.3356 7 6 4.7180 2.4885 1.1388 8 6 6.0094 0.5918 0.1986 9 8 6.8472 0.5090 -0.6744 10 7 6.1604 -0.1003 1.3453 11 6 5.1177 -0.1271 2.3931 12 6 4.7657 -1.5617 2.7805 13 6 6.0278 -2.3987 3.0531 14 6 6.8837 -2.3411 1.8095 15 1 6.2676 -2.5989 0.9481 16 6 7.3597 -0.8770 1.6320 17 1 7.8576 -0.5116 2.5302 18 6 8.3517 -1.0527 0.4761 19 6 9.0380 -2.3953 0.8550 20 7 8.1068 -3.1187 1.7558 21 6 8.3550 -4.2950 2.4115 22 1 7.5965 -4.7305 3.0451 23 6 9.5815 -4.9275 2.2619 24 7 10.5057 -4.3970 1.4894 25 14 9.9199 -6.5325 3.1559 26 1 8.9335 -7.5559 2.7260 27 1 11.2913 -7.0003 2.8312 28 1 9.8035 -6.3173 4.6206 29 6 3.5449 -0.7096 -0.0049 30 7 2.2951 -1.0853 0.0007 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.9751 2.1201 -0.0007 35 1 5.7998 2.8398 -1.3252 36 1 4.0276 2.8172 -1.4905 37 1 4.9996 1.4766 -2.1436 38 1 3.7782 3.0361 1.0689 39 1 4.7659 1.9697 2.0961 40 1 5.5517 3.1863 1.0614 41 1 5.4818 0.4022 3.2737 42 1 4.2234 0.3727 2.0208 43 1 4.1475 -1.5469 3.6780 44 1 4.2019 -2.0216 1.9688 45 1 6.5740 -1.9810 3.8988 46 1 5.7495 -3.4313 3.2639 47 1 9.0753 -0.2380 0.4500 48 1 7.8277 -1.1373 -0.4760 49 1 9.9781 -2.2000 1.3709 50 1 9.2220 -2.9861 -0.0422 51 1 11.3629 -4.8388 1.3852 52 1 4.4004 -1.3688 -0.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049544361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:32 Heat of formation + Delta-G solvation = 64.835978 kcal Electronic energy + Delta-G solvation = -33446.477871 eV Core-core repulsion = 29448.161252 eV Total energy + Delta-G solvation = -3998.316619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.60123 -41.75362 -39.70569 -37.34586 -36.68211 -34.29671 -33.93973 -32.76438 -31.53787 -30.86709 -29.92847 -28.40032 -27.91110 -26.54648 -26.33813 -24.01623 -23.20617 -22.91858 -22.16339 -21.27430 -21.01283 -20.12022 -18.76078 -18.28485 -17.42411 -16.92880 -16.86073 -16.34590 -16.27999 -16.03005 -15.59987 -15.44866 -15.32173 -14.96384 -14.76401 -14.40866 -14.33053 -14.13677 -14.00631 -13.89329 -13.64167 -13.39158 -13.30635 -13.21767 -13.15774 -13.00984 -12.94670 -12.79702 -12.71309 -12.53974 -12.28468 -12.13627 -11.90438 -11.84255 -11.75898 -11.62716 -11.51044 -10.91466 -10.79373 -10.59595 -10.43167 -9.72876 -9.22919 -8.94310 -7.86348 -5.23372 0.97449 1.07125 1.44418 1.47999 1.53997 1.65212 1.95227 2.14492 2.48476 2.89869 3.31970 3.34262 3.58129 3.60983 3.65753 3.82493 3.85000 3.89181 3.94166 3.96608 4.16779 4.22695 4.35713 4.46288 4.47878 4.51127 4.52588 4.56197 4.62850 4.64395 4.66405 4.69618 4.83549 4.91752 4.98601 5.01843 5.03449 5.06392 5.07233 5.13110 5.21377 5.22685 5.29913 5.33059 5.44933 5.52723 5.55775 5.68927 5.89945 6.12304 6.15335 6.25763 6.88921 7.03424 7.14163 7.73072 8.42019 9.25059 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.003510 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.397503 B = 7976.334744 C = 8878.807113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.028 4.028 3 C -0.031 4.031 4 N -0.442 5.442 5 C 0.150 3.850 6 C -0.138 4.138 7 C -0.166 4.166 8 C 0.510 3.490 9 O -0.548 6.548 10 N -0.587 5.587 11 C 0.099 3.901 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.156 3.844 15 H -0.008 1.008 16 C 0.132 3.868 17 H 0.089 0.911 18 C -0.116 4.116 19 C 0.183 3.817 20 N -0.610 5.610 21 C -0.236 4.236 22 H 0.087 0.913 23 C -0.066 4.066 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.272 1.272 29 C 0.173 3.827 30 N -0.516 5.516 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.216 0.784 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.028 0.972 50 H -0.002 1.002 51 H 0.247 0.753 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.504 20.442 1.683 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.156 4.156 3 C -0.163 4.163 4 N -0.128 5.128 5 C 0.063 3.937 6 C -0.196 4.196 7 C -0.223 4.223 8 C 0.296 3.704 9 O -0.425 6.425 10 N -0.319 5.319 11 C -0.021 4.021 12 C -0.160 4.160 13 C -0.146 4.146 14 C 0.048 3.952 15 H 0.010 0.990 16 C 0.027 3.973 17 H 0.107 0.893 18 C -0.154 4.154 19 C 0.058 3.942 20 N -0.335 5.335 21 C -0.364 4.364 22 H 0.105 0.895 23 C -0.259 4.259 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.197 1.197 29 C -0.109 4.109 30 N -0.236 5.236 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.232 0.768 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.016 0.984 51 H 0.056 0.944 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.037 19.528 1.237 27.299 hybrid contribution 1.527 -1.025 -0.104 1.842 sum -17.509 18.503 1.133 25.499 Atomic orbital electron populations 1.20066 0.85924 1.03389 1.02546 1.21316 0.97813 0.88323 1.08173 1.22901 0.81144 1.01747 1.10460 1.45722 1.06646 1.06475 1.53949 1.21234 0.79816 0.90884 1.01741 1.22006 1.04937 1.00193 0.92448 1.22546 1.06450 0.97680 0.95626 1.20755 0.88135 0.80232 0.81242 1.90740 1.45325 1.63961 1.42439 1.48054 1.18122 1.47141 1.18601 1.22326 0.90888 0.98007 0.90927 1.21898 0.96772 0.94360 1.03006 1.21364 0.95888 1.00240 0.97100 1.20773 0.88201 0.89993 0.96235 0.99031 1.21986 0.86031 0.91197 0.98073 0.89345 1.22754 0.97665 0.96865 0.98139 1.21441 0.92169 0.88904 0.91688 1.44311 1.12498 1.23320 1.53355 1.19351 0.98655 0.97242 1.21184 0.89546 1.25668 0.96464 1.02587 1.01185 1.70160 1.05986 1.41075 1.42988 0.85160 0.76439 0.79261 0.78532 1.20611 1.22225 1.19730 1.24538 0.96452 0.82837 1.07045 1.70218 1.00764 1.32194 1.20384 0.91259 0.92383 0.88593 0.76753 0.89409 0.88022 0.93630 0.87287 0.90064 0.88755 0.88596 0.87704 0.87801 0.92522 0.91156 0.92721 0.91144 0.90838 0.95329 0.98406 0.94412 0.81084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.42 71.24 0.74 -0.12 16 2 C -0.03 -0.57 7.09 41.39 0.29 -0.28 16 3 C -0.03 -0.47 10.43 83.09 0.87 0.40 16 4 N -0.44 -8.69 1.50 -488.71 -0.73 -9.42 16 5 C 0.15 2.73 0.79 2.86 0.00 2.73 16 6 C -0.14 -2.27 7.95 71.98 0.57 -1.70 16 7 C -0.17 -1.70 8.12 71.98 0.58 -1.11 16 8 C 0.51 14.08 5.42 87.65 0.48 14.55 16 9 O -0.55 -19.45 12.70 -3.04 -0.04 -19.49 16 10 N -0.59 -16.23 2.46 -792.32 -1.95 -18.18 16 11 C 0.10 2.07 3.54 86.03 0.30 2.37 16 12 C -0.12 -3.00 5.76 30.79 0.18 -2.82 16 13 C -0.11 -3.59 5.45 30.26 0.16 -3.42 16 14 C 0.16 6.52 2.57 45.32 0.12 6.64 16 15 H -0.01 -0.35 8.04 -2.38 -0.02 -0.37 16 16 C 0.13 4.78 3.28 45.93 0.15 4.93 16 17 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 18 C -0.12 -4.93 5.12 31.56 0.16 -4.77 16 19 C 0.18 9.70 5.47 86.87 0.48 10.17 16 20 N -0.61 -32.21 3.35 -671.50 -2.25 -34.46 16 21 C -0.24 -13.32 9.94 84.03 0.84 -12.49 16 22 H 0.09 4.62 7.31 -2.91 -0.02 4.60 16 23 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 24 N -0.95 -58.95 10.46 21.65 0.23 -58.72 16 25 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 29 C 0.17 4.73 8.17 180.26 1.47 6.21 16 30 N -0.52 -14.67 11.25 -188.30 -2.12 -16.79 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.22 1.26 7.82 -2.91 -0.02 1.24 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.01 8.07 -2.38 -0.02 0.99 16 37 H 0.04 1.02 8.02 -2.39 -0.02 1.00 16 38 H 0.11 0.49 7.40 -2.39 -0.02 0.47 16 39 H 0.08 0.87 4.79 -2.39 -0.01 0.86 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 1.57 7.97 -2.39 -0.02 1.55 16 42 H 0.11 1.87 3.67 -2.39 -0.01 1.86 16 43 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.06 1.61 6.08 -2.39 -0.01 1.60 16 45 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 46 H 0.05 1.97 7.70 -2.39 -0.02 1.95 16 47 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 48 H 0.07 3.33 6.04 -2.39 -0.01 3.32 16 49 H 0.03 1.65 7.19 -2.39 -0.02 1.63 16 50 H 0.00 -0.14 7.81 -2.39 -0.02 -0.16 16 51 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 52 H 0.17 5.63 6.45 -2.91 -0.02 5.61 16 Total: -1.00 -76.69 383.53 3.95 -72.74 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.91 Total: 17.86 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 7.86 Total: 17.91 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -6.82 Total: -137.57 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.04 Total: -19.49 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.69 3.95 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049544361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.578 kcal (2) G-P(sol) polarization free energy of solvation -76.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds