Wall clock time and date at job start Wed Apr 1 2020 03:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30836 * 125.89747 * 2 1 4 4 N 1.40085 * 108.20137 * 180.25965 * 3 2 1 5 5 H 0.97002 * 126.03816 * 179.74676 * 4 3 2 6 6 C 1.34954 * 107.92528 * 359.71901 * 4 3 2 7 7 C 1.50703 * 126.12443 * 179.97438 * 6 4 3 8 8 C 1.35308 * 107.74369 * 0.02562 * 6 4 3 9 9 C 1.50706 * 126.03691 * 180.02562 * 8 6 4 10 10 H 1.08998 * 109.47247 * 3.20519 * 9 8 6 11 11 C 1.53002 * 109.46906 * 243.20524 * 9 8 6 12 12 C 1.50705 * 109.47388 * 123.20679 * 9 8 6 13 13 O 1.21286 * 119.99756 * 13.07931 * 12 9 8 14 14 N 1.34774 * 120.00156 * 193.08153 * 12 9 8 15 15 C 1.47849 * 122.22682 * 354.91142 * 14 12 9 16 16 C 1.52712 * 111.06965 * 232.50544 * 15 14 12 17 17 C 1.53877 * 111.52107 * 311.47860 * 16 15 14 18 18 C 1.51080 * 107.33665 * 56.92094 * 17 16 15 19 19 H 1.09000 * 108.73528 * 50.83602 * 18 17 16 20 20 C 1.46096 * 122.73484 * 174.54521 * 14 12 9 21 21 H 1.09002 * 111.69832 * 240.18479 * 20 14 12 22 22 C 1.53435 * 115.85509 * 9.69322 * 20 14 12 23 23 C 1.55529 * 101.76463 * 152.08559 * 22 20 14 24 24 N 1.45025 * 119.18722 * 176.09838 * 18 17 16 25 25 C 1.36938 * 126.56325 * 330.59357 * 24 18 17 26 26 H 1.07994 * 119.99968 * 5.49107 * 25 24 18 27 27 C 1.38817 * 120.00137 * 185.49111 * 25 24 18 28 28 N 1.31623 * 119.99721 * 354.82347 * 27 25 24 29 29 Si 1.86792 * 120.00145 * 174.54991 * 27 25 24 30 30 H 1.48496 * 109.47340 * 94.99461 * 29 27 25 31 31 H 1.48499 * 109.47229 * 215.00131 * 29 27 25 32 32 H 1.48506 * 109.47212 * 334.99367 * 29 27 25 33 33 H 1.09000 * 109.47052 * 275.95114 * 1 2 3 34 34 H 1.08996 * 109.46748 * 35.95205 * 1 2 3 35 35 H 1.08999 * 109.47214 * 155.95212 * 1 2 3 36 36 H 1.08996 * 109.47115 * 270.02686 * 7 6 4 37 37 H 1.08995 * 109.46808 * 30.03178 * 7 6 4 38 38 H 1.08999 * 109.46827 * 150.02484 * 7 6 4 39 39 H 1.09003 * 109.46692 * 65.94490 * 11 9 8 40 40 H 1.09002 * 109.46826 * 185.94311 * 11 9 8 41 41 H 1.08996 * 109.47512 * 305.94408 * 11 9 8 42 42 H 1.08999 * 109.15970 * 112.09635 * 15 14 12 43 43 H 1.08999 * 109.11984 * 352.89140 * 15 14 12 44 44 H 1.08999 * 109.07413 * 190.95295 * 16 15 14 45 45 H 1.09001 * 109.06614 * 72.00020 * 16 15 14 46 46 H 1.09001 * 109.87896 * 297.46352 * 17 16 15 47 47 H 1.08996 * 109.94005 * 176.41471 * 17 16 15 48 48 H 1.08997 * 110.98161 * 270.38693 * 22 20 14 49 49 H 1.08997 * 110.98429 * 34.18995 * 22 20 14 50 50 H 1.09002 * 110.07822 * 218.31513 * 23 22 20 51 51 H 1.09003 * 109.86412 * 97.05937 * 23 22 20 52 52 H 0.97002 * 119.99533 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3909 1.2079 -0.0108 6 6 3.6142 -0.7155 -0.0033 7 6 4.8350 -1.5990 -0.0084 8 6 2.3272 -1.1330 0.0036 9 6 1.8599 -2.5658 0.0092 10 1 2.7230 -3.2292 0.0643 11 6 1.0777 -2.8521 -1.2742 12 6 0.9698 -2.7992 1.2027 13 8 0.5447 -1.8561 1.8359 14 7 0.6461 -4.0560 1.5664 15 6 1.0444 -5.2351 0.7683 16 6 -0.1617 -6.1168 0.4521 17 6 -1.0012 -6.3975 1.7107 18 6 -1.4106 -5.0617 2.2859 19 1 -1.8524 -4.4594 1.4921 20 6 -0.1144 -4.3570 2.7770 21 1 0.4496 -4.9927 3.4596 22 6 -0.7277 -3.1502 3.4993 23 6 -1.9652 -3.7899 4.1909 24 7 -2.2889 -5.0277 3.4394 25 6 -3.2392 -5.9569 3.7688 26 1 -3.3304 -6.8644 3.1905 27 6 -4.0854 -5.7325 4.8461 28 7 -3.9092 -4.6771 5.6126 29 14 -5.4788 -6.9241 5.2034 30 1 -5.0342 -7.9168 6.2144 31 1 -6.6492 -6.1747 5.7267 32 1 -5.8609 -7.6283 3.9530 33 1 -0.3633 0.1065 1.0221 34 1 -0.3633 0.8319 -0.6033 35 1 -0.3633 -0.9385 -0.4188 36 1 5.1239 -1.8137 -1.0372 37 1 5.6538 -1.0903 0.5003 38 1 4.6103 -2.5322 0.5082 39 1 1.7484 -2.7861 -2.1308 40 1 0.6504 -3.8536 -1.2235 41 1 0.2769 -2.1206 -1.3826 42 1 1.7754 -5.8168 1.3298 43 1 1.4960 -4.8985 -0.1649 44 1 0.1875 -7.0630 0.0386 45 1 -0.7855 -5.6150 -0.2876 46 1 -0.4052 -6.9477 2.4388 47 1 -1.8873 -6.9742 1.4455 48 1 -0.0344 -2.7416 4.2344 49 1 -1.0357 -2.3844 2.7874 50 1 -2.8101 -3.1021 4.1569 51 1 -1.7257 -4.0347 5.2258 52 1 -4.5008 -4.5201 6.3651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049790946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:32 Heat of formation + Delta-G solvation = 74.551292 kcal Electronic energy + Delta-G solvation = -32748.480132 eV Core-core repulsion = 28750.584801 eV Total energy + Delta-G solvation = -3997.895331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57216 -40.18501 -37.78167 -35.47273 -34.24932 -33.38718 -32.51319 -32.05176 -30.38917 -28.80380 -28.21714 -27.93259 -26.86522 -25.17133 -24.40501 -23.40400 -21.44371 -21.09624 -20.14479 -19.80832 -19.42374 -18.42442 -17.24883 -16.69926 -15.98920 -15.78022 -15.25489 -15.07004 -14.74409 -14.27479 -14.19687 -14.04419 -13.74054 -13.62492 -13.44496 -13.31574 -13.12038 -12.95389 -12.57397 -12.45997 -12.38787 -12.28329 -12.13070 -11.92855 -11.70589 -11.63046 -11.46931 -11.32582 -11.04531 -10.80918 -10.63874 -10.46326 -10.38319 -10.27333 -10.05467 -9.89964 -9.78413 -9.55397 -9.17114 -8.84636 -8.52641 -8.36184 -8.10292 -6.76532 -5.66572 -2.99807 1.80014 2.69076 2.81660 2.98046 3.33217 3.42485 3.47992 3.50111 4.46986 4.53128 4.59237 4.62788 4.81131 4.87541 5.03387 5.07909 5.14987 5.19590 5.21814 5.30728 5.35944 5.42946 5.50266 5.54276 5.61404 5.63115 5.65052 5.75784 5.83061 5.89211 5.93088 6.00681 6.04718 6.06430 6.13085 6.19508 6.29704 6.32674 6.34828 6.45869 6.62509 6.74712 6.78412 6.87355 6.97188 7.24510 7.28687 7.63972 7.72422 7.72978 7.83338 7.90586 8.30116 8.59822 9.23891 9.88144 10.57242 11.45868 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.003049 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.407312 B = 9181.255876 C = 9926.438987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.122 3.878 3 N -0.305 5.305 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.087 3.913 7 C -0.093 4.093 8 C -0.214 4.214 9 C -0.029 4.029 10 H 0.092 0.908 11 C -0.150 4.150 12 C 0.521 3.479 13 O -0.518 6.518 14 N -0.602 5.602 15 C 0.104 3.896 16 C -0.129 4.129 17 C -0.116 4.116 18 C 0.159 3.841 19 H 0.019 0.981 20 C 0.118 3.882 21 H 0.078 0.922 22 C -0.133 4.133 23 C 0.173 3.827 24 N -0.593 5.593 25 C -0.226 4.226 26 H 0.078 0.922 27 C -0.007 4.007 28 N -0.918 5.918 29 Si 0.908 3.092 30 H -0.290 1.290 31 H -0.291 1.291 32 H -0.281 1.281 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.089 0.911 50 H 0.041 0.959 51 H 0.050 0.950 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.340 2.881 -15.634 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.044 4.044 3 N -0.128 5.128 4 N -0.189 5.189 5 H 0.278 0.722 6 C -0.041 4.041 7 C -0.152 4.152 8 C -0.226 4.226 9 C -0.052 4.052 10 H 0.110 0.890 11 C -0.207 4.207 12 C 0.308 3.692 13 O -0.394 6.394 14 N -0.335 5.335 15 C -0.019 4.019 16 C -0.168 4.168 17 C -0.155 4.155 18 C 0.050 3.950 19 H 0.036 0.964 20 C 0.014 3.986 21 H 0.095 0.905 22 C -0.172 4.172 23 C 0.049 3.951 24 N -0.318 5.318 25 C -0.354 4.354 26 H 0.096 0.904 27 C -0.204 4.204 28 N -0.565 5.565 29 Si 0.739 3.261 30 H -0.218 1.218 31 H -0.217 1.217 32 H -0.207 1.207 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.108 0.892 50 H 0.059 0.941 51 H 0.068 0.932 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.938 4.673 -15.121 23.922 hybrid contribution -0.199 -1.326 0.378 1.393 sum 17.739 3.347 -14.743 23.307 Atomic orbital electron populations 1.20333 0.86548 1.02095 1.03951 1.22111 0.96989 0.89534 0.95808 1.77308 0.86204 1.22320 1.27009 1.46061 1.07442 1.04509 1.60888 0.72203 1.20757 0.96567 0.85213 1.01597 1.20468 0.92968 0.98494 1.03239 1.19094 0.91103 0.94771 1.17628 1.19529 0.98131 0.93023 0.94485 0.88986 1.22009 1.00663 1.02561 0.95471 1.20396 0.81096 0.82148 0.85528 1.90672 1.53072 1.41222 1.54426 1.48057 1.55425 1.05264 1.24798 1.21823 0.97128 0.87216 0.95750 1.21894 0.96833 0.99111 0.98925 1.21439 0.99233 0.98902 0.95911 1.20751 0.89461 0.93778 0.91013 0.96386 1.22458 0.91998 0.98636 0.85557 0.90457 1.23039 0.98068 0.96518 0.99558 1.21727 0.92181 0.86698 0.94511 1.44083 1.39435 1.23865 1.24386 1.18978 1.07356 0.98056 1.11031 0.90429 1.24808 0.99414 0.97981 0.98153 1.69967 1.39503 1.28339 1.18708 0.86163 0.82188 0.79902 0.77879 1.21779 1.21705 1.20694 0.89076 0.92054 0.90683 0.90149 0.91093 0.89656 0.91715 0.91333 0.91285 0.91872 0.89889 0.91055 0.91802 0.91943 0.91587 0.92525 0.89243 0.94107 0.93212 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 8.56 36.01 0.31 -0.67 16 2 C 0.12 1.76 6.51 -82.40 -0.54 1.22 16 3 N -0.31 -4.42 12.70 33.67 0.43 -3.99 16 4 N -0.48 -5.26 7.36 33.48 0.25 -5.02 16 5 H 0.43 3.24 8.96 -182.61 -1.64 1.60 16 6 C 0.09 0.91 7.21 -82.26 -0.59 0.32 16 7 C -0.09 -0.57 10.09 36.01 0.36 -0.21 16 8 C -0.21 -2.68 4.54 -105.06 -0.48 -3.16 16 9 C -0.03 -0.32 2.00 -92.92 -0.19 -0.51 16 10 H 0.09 0.81 6.20 -51.93 -0.32 0.49 16 11 C -0.15 -1.41 8.65 37.16 0.32 -1.08 16 12 C 0.52 7.75 6.57 -10.98 -0.07 7.68 16 13 O -0.52 -9.44 9.72 5.55 0.05 -9.39 16 14 N -0.60 -8.85 2.91 -163.72 -0.48 -9.33 16 15 C 0.10 1.13 5.58 -3.45 -0.02 1.11 16 16 C -0.13 -1.52 5.92 -26.42 -0.16 -1.68 16 17 C -0.12 -1.93 5.43 -27.24 -0.15 -2.08 16 18 C 0.16 3.26 2.59 -68.36 -0.18 3.08 16 19 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 20 C 0.12 2.18 3.34 -66.60 -0.22 1.96 16 21 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 22 C -0.13 -2.81 5.14 -25.16 -0.13 -2.94 16 23 C 0.17 4.39 5.46 -1.66 -0.01 4.38 16 24 N -0.59 -15.13 3.35 -163.24 -0.55 -15.68 16 25 C -0.23 -6.23 9.96 -15.06 -0.15 -6.38 16 26 H 0.08 2.05 7.29 -52.49 -0.38 1.66 16 27 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 28 N -0.92 -27.35 10.50 55.49 0.58 -26.77 16 29 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 32 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 33 H 0.09 1.44 7.25 -51.93 -0.38 1.06 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.99 4.99 -51.93 -0.26 0.73 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.51 7.10 -51.93 -0.37 0.14 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.59 5.84 -51.93 -0.30 0.29 16 41 H 0.07 0.73 5.34 -51.93 -0.28 0.45 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.68 4.50 -51.93 -0.23 0.44 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 47 H 0.07 1.16 7.71 -51.93 -0.40 0.76 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.09 1.96 5.98 -51.93 -0.31 1.65 16 50 H 0.04 1.14 7.69 -51.93 -0.40 0.74 16 51 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 52 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -34.43 384.33 -10.35 -44.78 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -9.43 Total: 1.71 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.98 Total: 0.75 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.23 Total: -60.79 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.05 Total: -9.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.43 -10.35 -44.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049790946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.335 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds