Wall clock time and date at job start Wed Apr 1 2020 03:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30836 * 125.89747 * 2 1 4 4 N 1.40085 * 108.20137 * 180.25965 * 3 2 1 5 5 H 0.97002 * 126.03816 * 179.74676 * 4 3 2 6 6 C 1.34954 * 107.92528 * 359.71901 * 4 3 2 7 7 C 1.50703 * 126.12443 * 179.97438 * 6 4 3 8 8 C 1.35308 * 107.74369 * 0.02562 * 6 4 3 9 9 C 1.50706 * 126.03691 * 180.02562 * 8 6 4 10 10 H 1.08998 * 109.47247 * 3.20519 * 9 8 6 11 11 C 1.53002 * 109.46906 * 243.20524 * 9 8 6 12 12 C 1.50705 * 109.47388 * 123.20679 * 9 8 6 13 13 O 1.21286 * 119.99756 * 13.07931 * 12 9 8 14 14 N 1.34774 * 120.00156 * 193.08153 * 12 9 8 15 15 C 1.47849 * 122.22682 * 354.91142 * 14 12 9 16 16 C 1.52712 * 111.06965 * 232.50544 * 15 14 12 17 17 C 1.53877 * 111.52107 * 311.47860 * 16 15 14 18 18 C 1.51080 * 107.33665 * 56.92094 * 17 16 15 19 19 H 1.09000 * 108.73528 * 50.83602 * 18 17 16 20 20 C 1.46096 * 122.73484 * 174.54521 * 14 12 9 21 21 H 1.09002 * 111.69832 * 240.18479 * 20 14 12 22 22 C 1.53435 * 115.85509 * 9.69322 * 20 14 12 23 23 C 1.55529 * 101.76463 * 152.08559 * 22 20 14 24 24 N 1.45025 * 119.18722 * 176.09838 * 18 17 16 25 25 C 1.36938 * 126.56325 * 330.59357 * 24 18 17 26 26 H 1.07994 * 119.99968 * 5.49107 * 25 24 18 27 27 C 1.38817 * 120.00137 * 185.49111 * 25 24 18 28 28 N 1.31623 * 119.99721 * 354.82347 * 27 25 24 29 29 Si 1.86792 * 120.00145 * 174.54991 * 27 25 24 30 30 H 1.48496 * 109.47340 * 94.99461 * 29 27 25 31 31 H 1.48499 * 109.47229 * 215.00131 * 29 27 25 32 32 H 1.48506 * 109.47212 * 334.99367 * 29 27 25 33 33 H 1.09000 * 109.47052 * 275.95114 * 1 2 3 34 34 H 1.08996 * 109.46748 * 35.95205 * 1 2 3 35 35 H 1.08999 * 109.47214 * 155.95212 * 1 2 3 36 36 H 1.08996 * 109.47115 * 270.02686 * 7 6 4 37 37 H 1.08995 * 109.46808 * 30.03178 * 7 6 4 38 38 H 1.08999 * 109.46827 * 150.02484 * 7 6 4 39 39 H 1.09003 * 109.46692 * 65.94490 * 11 9 8 40 40 H 1.09002 * 109.46826 * 185.94311 * 11 9 8 41 41 H 1.08996 * 109.47512 * 305.94408 * 11 9 8 42 42 H 1.08999 * 109.15970 * 112.09635 * 15 14 12 43 43 H 1.08999 * 109.11984 * 352.89140 * 15 14 12 44 44 H 1.08999 * 109.07413 * 190.95295 * 16 15 14 45 45 H 1.09001 * 109.06614 * 72.00020 * 16 15 14 46 46 H 1.09001 * 109.87896 * 297.46352 * 17 16 15 47 47 H 1.08996 * 109.94005 * 176.41471 * 17 16 15 48 48 H 1.08997 * 110.98161 * 270.38693 * 22 20 14 49 49 H 1.08997 * 110.98429 * 34.18995 * 22 20 14 50 50 H 1.09002 * 110.07822 * 218.31513 * 23 22 20 51 51 H 1.09003 * 109.86412 * 97.05937 * 23 22 20 52 52 H 0.97002 * 119.99533 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3909 1.2079 -0.0108 6 6 3.6142 -0.7155 -0.0033 7 6 4.8350 -1.5990 -0.0084 8 6 2.3272 -1.1330 0.0036 9 6 1.8599 -2.5658 0.0092 10 1 2.7230 -3.2292 0.0643 11 6 1.0777 -2.8521 -1.2742 12 6 0.9698 -2.7992 1.2027 13 8 0.5447 -1.8561 1.8359 14 7 0.6461 -4.0560 1.5664 15 6 1.0444 -5.2351 0.7683 16 6 -0.1617 -6.1168 0.4521 17 6 -1.0012 -6.3975 1.7107 18 6 -1.4106 -5.0617 2.2859 19 1 -1.8524 -4.4594 1.4921 20 6 -0.1144 -4.3570 2.7770 21 1 0.4496 -4.9927 3.4596 22 6 -0.7277 -3.1502 3.4993 23 6 -1.9652 -3.7899 4.1909 24 7 -2.2889 -5.0277 3.4394 25 6 -3.2392 -5.9569 3.7688 26 1 -3.3304 -6.8644 3.1905 27 6 -4.0854 -5.7325 4.8461 28 7 -3.9092 -4.6771 5.6126 29 14 -5.4788 -6.9241 5.2034 30 1 -5.0342 -7.9168 6.2144 31 1 -6.6492 -6.1747 5.7267 32 1 -5.8609 -7.6283 3.9530 33 1 -0.3633 0.1065 1.0221 34 1 -0.3633 0.8319 -0.6033 35 1 -0.3633 -0.9385 -0.4188 36 1 5.1239 -1.8137 -1.0372 37 1 5.6538 -1.0903 0.5003 38 1 4.6103 -2.5322 0.5082 39 1 1.7484 -2.7861 -2.1308 40 1 0.6504 -3.8536 -1.2235 41 1 0.2769 -2.1206 -1.3826 42 1 1.7754 -5.8168 1.3298 43 1 1.4960 -4.8985 -0.1649 44 1 0.1875 -7.0630 0.0386 45 1 -0.7855 -5.6150 -0.2876 46 1 -0.4052 -6.9477 2.4388 47 1 -1.8873 -6.9742 1.4455 48 1 -0.0344 -2.7416 4.2344 49 1 -1.0357 -2.3844 2.7874 50 1 -2.8101 -3.1021 4.1569 51 1 -1.7257 -4.0347 5.2258 52 1 -4.5008 -4.5201 6.3651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049790946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:30 Heat of formation + Delta-G solvation = 51.619810 kcal Electronic energy + Delta-G solvation = -32749.474516 eV Core-core repulsion = 28750.584801 eV Total energy + Delta-G solvation = -3998.889715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.49044 -41.45708 -39.20230 -36.88689 -35.33770 -34.26688 -34.07279 -33.64211 -31.36793 -30.52424 -29.59700 -28.95108 -27.60700 -26.56418 -26.16657 -24.45067 -22.75890 -22.55608 -21.49622 -21.06498 -20.65820 -19.46362 -18.62228 -18.04681 -17.21777 -17.03413 -16.70395 -16.30321 -16.12101 -15.66470 -15.48602 -15.22895 -15.07232 -14.79534 -14.55298 -14.28127 -14.10815 -14.09310 -13.93052 -13.59842 -13.48182 -13.29734 -13.22970 -13.12674 -12.98879 -12.86074 -12.78650 -12.65890 -12.43332 -12.26187 -12.07365 -12.02045 -11.83227 -11.69851 -11.64521 -11.44891 -11.33773 -11.21052 -10.72872 -10.11591 -10.06029 -9.42211 -9.25188 -8.86179 -7.83366 -5.19085 0.96227 1.45625 1.48211 1.57116 1.68574 1.87184 2.04381 2.21497 2.52083 3.35998 3.42736 3.69072 3.71661 3.81323 3.96546 4.06791 4.12802 4.17149 4.18875 4.30340 4.33153 4.38545 4.43067 4.49575 4.52659 4.63680 4.66547 4.75702 4.76094 4.81328 4.82838 4.91724 4.97128 4.98818 5.09247 5.11505 5.14192 5.20823 5.21515 5.25775 5.27350 5.35694 5.46252 5.52094 5.53544 5.64702 5.67700 5.77619 5.83090 6.20704 6.53059 6.72267 6.81237 7.07166 7.45649 7.78276 8.49224 9.29050 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.003049 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.407312 B = 9181.255876 C = 9926.438987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.101 3.899 3 N -0.345 5.345 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.103 3.897 7 C -0.092 4.092 8 C -0.241 4.241 9 C -0.015 4.015 10 H 0.129 0.871 11 C -0.148 4.148 12 C 0.513 3.487 13 O -0.560 6.560 14 N -0.602 5.602 15 C 0.098 3.902 16 C -0.120 4.120 17 C -0.112 4.112 18 C 0.153 3.847 19 H 0.000 1.000 20 C 0.135 3.865 21 H 0.078 0.922 22 C -0.115 4.115 23 C 0.184 3.816 24 N -0.613 5.613 25 C -0.231 4.231 26 H 0.090 0.910 27 C -0.071 4.071 28 N -0.955 5.955 29 Si 0.978 3.022 30 H -0.285 1.285 31 H -0.299 1.299 32 H -0.265 1.265 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.079 0.921 50 H -0.002 1.002 51 H 0.017 0.983 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.739 0.299 -18.681 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 N -0.170 5.170 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.027 4.027 7 C -0.150 4.150 8 C -0.253 4.253 9 C -0.037 4.037 10 H 0.146 0.854 11 C -0.205 4.205 12 C 0.302 3.698 13 O -0.439 6.439 14 N -0.335 5.335 15 C -0.023 4.023 16 C -0.159 4.159 17 C -0.151 4.151 18 C 0.045 3.955 19 H 0.017 0.983 20 C 0.030 3.970 21 H 0.096 0.904 22 C -0.154 4.154 23 C 0.059 3.941 24 N -0.337 5.337 25 C -0.360 4.360 26 H 0.107 0.893 27 C -0.264 4.264 28 N -0.604 5.604 29 Si 0.806 3.194 30 H -0.212 1.212 31 H -0.226 1.226 32 H -0.189 1.189 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.140 0.860 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.097 0.903 50 H 0.016 0.984 51 H 0.035 0.965 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 21.380 2.065 -18.233 28.175 hybrid contribution -1.208 -0.443 1.308 1.834 sum 20.172 1.622 -16.925 26.382 Atomic orbital electron populations 1.20201 0.87372 1.02567 1.02125 1.22218 0.96975 0.90729 0.96566 1.77210 0.87928 1.23250 1.28583 1.46115 1.06840 1.05371 1.60033 0.70573 1.21433 0.97490 0.85100 0.98648 1.20678 0.91220 0.97898 1.05253 1.19338 0.91700 0.94998 1.19252 1.19536 0.98387 0.92974 0.92829 0.85377 1.22026 1.00522 1.02521 0.95401 1.21264 0.80923 0.81393 0.86197 1.90670 1.54592 1.42575 1.56017 1.48142 1.54760 1.06853 1.23730 1.22196 0.97128 0.85770 0.97208 1.21888 0.96452 1.01392 0.96128 1.21427 0.99657 0.95933 0.98078 1.20951 0.89189 0.96537 0.88831 0.98275 1.22003 0.91721 0.96282 0.87014 0.90406 1.22750 0.96316 0.97138 0.99185 1.21407 0.92530 0.86542 0.93627 1.44354 1.40279 1.23296 1.25791 1.19422 1.07413 0.98534 1.10584 0.89256 1.25713 1.02180 0.99999 0.98507 1.70207 1.40418 1.30537 1.19249 0.85070 0.78541 0.77675 0.78127 1.21241 1.22602 1.18916 0.92095 0.91380 0.90350 0.87565 0.89483 0.88706 0.89109 0.90154 0.93248 0.89671 0.85988 0.87090 0.91799 0.91905 0.92878 0.92585 0.90267 0.98398 0.96497 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.88 8.56 71.24 0.61 -1.27 16 2 C 0.10 2.91 6.51 43.10 0.28 3.19 16 3 N -0.35 -10.01 12.70 -47.38 -0.60 -10.61 16 4 N -0.47 -9.55 7.36 -48.00 -0.35 -9.90 16 5 H 0.45 5.80 8.96 -213.33 -1.91 3.89 16 6 C 0.10 1.83 7.21 41.40 0.30 2.12 16 7 C -0.09 -0.67 10.09 71.24 0.72 0.05 16 8 C -0.24 -5.54 4.54 -20.15 -0.09 -5.63 16 9 C -0.02 -0.28 2.00 -12.28 -0.02 -0.31 16 10 H 0.13 1.47 6.20 -2.39 -0.01 1.46 16 11 C -0.15 -2.22 8.65 71.98 0.62 -1.59 16 12 C 0.51 14.47 6.57 87.66 0.58 15.04 16 13 O -0.56 -20.86 9.72 -3.05 -0.03 -20.89 16 14 N -0.60 -16.35 2.91 -790.28 -2.30 -18.65 16 15 C 0.10 1.64 5.58 86.02 0.48 2.12 16 16 C -0.12 -2.32 5.92 30.79 0.18 -2.14 16 17 C -0.11 -3.52 5.43 30.26 0.16 -3.35 16 18 C 0.15 6.30 2.59 45.50 0.12 6.42 16 19 H 0.00 -0.01 8.04 -2.39 -0.02 -0.03 16 20 C 0.14 5.00 3.34 46.07 0.15 5.16 16 21 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 22 C -0.12 -5.14 5.14 31.61 0.16 -4.98 16 23 C 0.18 10.05 5.46 86.89 0.47 10.52 16 24 N -0.61 -32.56 3.35 -670.37 -2.24 -34.80 16 25 C -0.23 -13.04 9.96 84.03 0.84 -12.21 16 26 H 0.09 4.72 7.29 -2.91 -0.02 4.70 16 27 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 28 N -0.95 -60.11 10.50 21.65 0.23 -59.88 16 29 Si 0.98 46.69 29.56 68.60 2.03 48.72 16 30 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 31 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 32 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 33 H 0.06 2.12 7.25 -2.39 -0.02 2.10 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.16 4.99 -2.39 -0.01 2.15 16 36 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.58 7.10 -2.39 -0.02 0.56 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.01 5.84 -2.39 -0.01 0.99 16 41 H 0.05 0.96 5.34 -2.39 -0.01 0.94 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.12 1.18 4.50 -2.39 -0.01 1.17 16 44 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 47 H 0.05 1.78 7.71 -2.39 -0.02 1.77 16 48 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.08 3.72 5.98 -2.39 -0.01 3.71 16 50 H 0.00 -0.14 7.69 -2.39 -0.02 -0.16 16 51 H 0.02 1.01 7.35 -2.39 -0.02 0.99 16 52 H 0.24 15.02 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -83.06 384.33 1.79 -81.27 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.96 Total: 15.32 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.03 Total: 9.43 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -5.27 Total: -133.84 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.03 Total: -20.89 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -83.06 1.79 -81.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049790946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.888 kcal (2) G-P(sol) polarization free energy of solvation -83.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds