Wall clock time and date at job start Wed Apr 1 2020 03:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34264 * 126.28913 * 2 1 4 4 H 0.96998 * 125.75009 * 359.96451 * 3 2 1 5 5 N 1.39930 * 108.48899 * 179.97438 * 3 2 1 6 6 C 1.30446 * 108.89794 * 359.75690 * 5 3 2 7 7 C 1.50707 * 125.98607 * 180.25859 * 6 5 3 8 8 C 1.52994 * 109.47176 * 300.14030 * 7 6 5 9 9 C 1.53000 * 109.46956 * 60.14497 * 7 6 5 10 10 C 1.38045 * 126.29290 * 179.97438 * 2 1 3 11 11 C 1.47425 * 126.41351 * 359.97438 * 10 2 1 12 12 O 1.21598 * 120.00144 * 90.02559 * 11 10 2 13 13 N 1.34777 * 119.99846 * 270.02278 * 11 10 2 14 14 C 1.45730 * 117.76229 * 0.02562 * 13 11 10 15 15 C 1.53051 * 109.56102 * 218.89400 * 14 13 11 16 16 C 1.52939 * 108.49391 * 306.20089 * 15 14 13 17 17 C 1.52336 * 109.87799 * 65.93044 * 16 15 14 18 18 H 1.08994 * 110.92438 * 66.63366 * 17 16 15 19 19 C 1.44187 * 117.76135 * 180.02562 * 13 11 10 20 20 H 1.09003 * 109.23032 * 27.35944 * 19 13 11 21 21 C 1.54067 * 111.76527 * 266.46409 * 19 13 11 22 22 C 1.54056 * 103.74243 * 206.74022 * 21 19 13 23 23 N 1.46879 * 107.70874 * 17.12818 * 22 21 19 24 24 C 1.36945 * 125.58340 * 182.96982 * 23 22 21 25 25 H 1.07997 * 119.99756 * 180.02562 * 24 23 22 26 26 C 1.38805 * 119.99878 * 0.02576 * 24 23 22 27 27 N 1.31624 * 120.00257 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47187 * 179.97438 * 28 26 24 30 30 H 1.48494 * 109.47141 * 300.00154 * 28 26 24 31 31 H 1.48498 * 109.47018 * 60.00200 * 28 26 24 32 32 H 1.09008 * 109.46733 * 270.01983 * 1 2 3 33 33 H 1.08995 * 109.47199 * 30.01796 * 1 2 3 34 34 H 1.08998 * 109.46938 * 150.02805 * 1 2 3 35 35 H 1.09005 * 109.46831 * 180.14087 * 7 6 5 36 36 H 1.09005 * 109.47194 * 60.00279 * 8 7 6 37 37 H 1.09000 * 109.46800 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47500 * 300.00168 * 8 7 6 39 39 H 1.08998 * 109.47314 * 59.99697 * 9 7 6 40 40 H 1.09005 * 109.46727 * 179.97438 * 9 7 6 41 41 H 1.08992 * 109.47310 * 299.99523 * 9 7 6 42 42 H 1.09006 * 109.45551 * 338.91980 * 14 13 11 43 43 H 1.09005 * 109.45768 * 98.88350 * 14 13 11 44 44 H 1.09006 * 109.63304 * 65.89857 * 15 14 13 45 45 H 1.09001 * 109.63684 * 186.29026 * 15 14 13 46 46 H 1.08997 * 109.41755 * 186.08946 * 16 15 14 47 47 H 1.09008 * 109.41181 * 305.95664 * 16 15 14 48 48 H 1.09003 * 110.57485 * 88.17480 * 21 19 13 49 49 H 1.08996 * 110.69826 * 325.36078 * 21 19 13 50 50 H 1.09004 * 109.81096 * 257.58282 * 22 21 19 51 51 H 1.08999 * 109.81376 * 136.68434 * 22 21 19 52 52 H 0.97001 * 119.99885 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0026 2.0049 -0.0005 5 7 3.6340 0.6545 0.0006 6 6 3.6590 -0.6497 0.0062 7 6 4.8952 -1.5117 0.0142 8 6 5.7323 -1.2146 -1.2315 9 6 5.7198 -1.2091 1.2670 10 6 2.3242 -1.1126 0.0005 11 6 1.8859 -2.5202 0.0017 12 8 1.7052 -3.1017 -1.0509 13 7 1.6856 -3.1627 1.1694 14 6 1.9161 -2.4192 2.4014 15 6 2.5798 -3.3327 3.4346 16 6 1.7239 -4.5905 3.5911 17 6 1.7390 -5.3917 2.2955 18 1 2.7331 -5.7921 2.0970 19 6 1.2578 -4.5385 1.1143 20 1 1.6138 -4.9883 0.1873 21 6 -0.2764 -4.6629 1.1799 22 6 -0.5047 -6.0592 1.7893 23 7 0.7543 -6.4851 2.4146 24 6 0.9763 -7.6958 3.0148 25 1 1.9410 -7.9148 3.4481 26 6 -0.0385 -8.6414 3.0662 27 7 -1.2141 -8.3747 2.5377 28 14 0.2646 -10.2932 3.8843 29 1 -0.9683 -11.1172 3.8076 30 1 1.3733 -10.9942 3.1884 31 1 0.6296 -10.0808 5.3080 32 1 -0.3633 0.0004 1.0278 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5134 35 1 4.6054 -2.5625 0.0151 36 1 6.0221 -0.1638 -1.2323 37 1 6.6266 -1.8377 -1.2253 38 1 5.1448 -1.4302 -2.1239 39 1 5.1234 -1.4208 2.1545 40 1 6.6137 -1.8329 1.2730 41 1 6.0096 -0.1584 1.2662 42 1 2.5675 -1.5696 2.1963 43 1 0.9640 -2.0606 2.7927 44 1 3.5773 -3.6088 3.0923 45 1 2.6514 -2.8135 4.3903 46 1 2.1231 -5.2020 4.4002 47 1 0.6985 -4.3041 3.8252 48 1 -0.7085 -4.6057 0.1808 49 1 -0.6983 -3.8907 1.8232 50 1 -0.7844 -6.7632 1.0054 51 1 -1.2924 -6.0100 2.5410 52 1 -1.9231 -9.0357 2.5733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049839173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:22 Heat of formation + Delta-G solvation = 53.133551 kcal Electronic energy + Delta-G solvation = -32703.670195 eV Core-core repulsion = 28704.846121 eV Total energy + Delta-G solvation = -3998.824074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76323 -40.00549 -37.68739 -35.91851 -35.27682 -32.54060 -32.47126 -32.11690 -30.88978 -28.98530 -28.34655 -27.45301 -27.24797 -24.70960 -24.32867 -23.42750 -22.38863 -21.87246 -20.15809 -19.44765 -19.21242 -18.18215 -17.65046 -16.85581 -16.64622 -15.62358 -15.17758 -15.03105 -14.75715 -14.68531 -14.33848 -14.20068 -13.89480 -13.81427 -13.48505 -13.40362 -13.25104 -12.89839 -12.82145 -12.63516 -12.37453 -12.27128 -12.01200 -11.91092 -11.60143 -11.38434 -11.33851 -11.19561 -11.03192 -10.91274 -10.74128 -10.72243 -10.61352 -10.43719 -10.10300 -10.04369 -9.63342 -9.59293 -9.54104 -9.50230 -8.66403 -8.57244 -8.23075 -6.83892 -5.68805 -3.03423 1.53435 2.32191 2.50601 2.75934 3.36633 3.42480 3.46899 3.47854 4.20314 4.42233 4.50620 4.67484 4.84102 4.87500 5.02951 5.05035 5.15520 5.19288 5.22125 5.34858 5.38527 5.44862 5.52202 5.53831 5.60662 5.61854 5.66769 5.69078 5.72232 5.76074 5.81021 5.88893 5.93188 6.06854 6.10118 6.12392 6.15760 6.28424 6.32287 6.34767 6.42820 6.61175 6.63529 6.79760 6.97197 7.04122 7.15591 7.42996 7.59285 7.62018 7.69252 7.85897 8.27567 8.45797 9.23505 9.83421 10.48508 11.41955 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.003157 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.875432 B = 8868.077118 C = 9494.864551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 N -0.466 5.466 4 H 0.440 0.560 5 N -0.290 5.290 6 C 0.125 3.875 7 C -0.020 4.020 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.269 4.269 11 C 0.586 3.414 12 O -0.535 6.535 13 N -0.578 5.578 14 C 0.115 3.885 15 C -0.131 4.131 16 C -0.129 4.129 17 C 0.162 3.838 18 H 0.054 0.946 19 C 0.136 3.864 20 H 0.092 0.908 21 C -0.150 4.150 22 C 0.180 3.820 23 N -0.596 5.596 24 C -0.227 4.227 25 H 0.077 0.923 26 C -0.006 4.006 27 N -0.921 5.921 28 Si 0.912 3.088 29 H -0.291 1.291 30 H -0.285 1.285 31 H -0.286 1.286 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.039 0.961 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 20.947 -2.326 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.006 4.006 3 N -0.172 5.172 4 H 0.284 0.716 5 N -0.112 5.112 6 C -0.043 4.043 7 C -0.040 4.040 8 C -0.199 4.199 9 C -0.199 4.199 10 C -0.284 4.284 11 C 0.372 3.628 12 O -0.411 6.411 13 N -0.309 5.309 14 C -0.008 4.008 15 C -0.170 4.170 16 C -0.169 4.169 17 C 0.053 3.947 18 H 0.072 0.928 19 C 0.032 3.968 20 H 0.110 0.890 21 C -0.189 4.189 22 C 0.055 3.945 23 N -0.320 5.320 24 C -0.355 4.355 25 H 0.095 0.905 26 C -0.202 4.202 27 N -0.568 5.568 28 Si 0.742 3.258 29 H -0.217 1.217 30 H -0.212 1.212 31 H -0.212 1.212 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.057 0.943 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.128 21.417 -2.829 23.081 hybrid contribution -0.744 -0.981 0.551 1.349 sum 7.385 20.436 -2.278 21.848 Atomic orbital electron populations 1.20580 0.86502 1.04659 1.04062 1.21341 0.94431 0.86678 0.98104 1.45966 1.04097 1.08127 1.59009 0.71597 1.77016 0.95582 1.12479 1.26111 1.22235 0.94008 0.91059 0.96961 1.19691 0.89887 0.97492 0.96937 1.21792 0.99385 1.02079 0.96635 1.21814 0.99562 1.02172 0.96369 1.19896 0.92949 0.93641 1.21924 1.17489 0.76819 0.84760 0.83743 1.90777 1.51306 1.67653 1.31354 1.47032 1.65976 1.12162 1.05682 1.21403 1.00098 0.94428 0.84857 1.21839 0.99784 0.97314 0.98036 1.21988 0.99484 0.95084 1.00350 1.20816 0.93975 0.88590 0.91298 0.92843 1.21167 0.95314 0.79653 1.00713 0.88995 1.22978 0.94860 1.00452 1.00620 1.21051 0.88491 0.88813 0.96165 1.44484 1.08271 1.12302 1.66951 1.18966 0.97560 0.89442 1.29556 0.90478 1.24789 0.95938 0.98504 1.01008 1.69964 1.02878 1.34471 1.49458 0.86209 0.76840 0.83662 0.79090 1.21656 1.21151 1.21236 0.89399 0.90489 0.89006 0.89330 0.92094 0.91840 0.92375 0.92353 0.91787 0.92048 0.90471 0.92408 0.91670 0.91314 0.91884 0.92025 0.91981 0.92668 0.92956 0.94278 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.25 36.01 0.37 -0.43 16 2 C 0.13 1.33 7.29 -81.60 -0.60 0.74 16 3 N -0.47 -4.31 7.29 33.86 0.25 -4.07 16 4 H 0.44 2.48 8.96 -182.73 -1.64 0.84 16 5 N -0.29 -3.41 12.63 33.90 0.43 -2.98 16 6 C 0.13 1.57 5.35 -82.02 -0.44 1.13 16 7 C -0.02 -0.22 3.31 -91.77 -0.30 -0.52 16 8 C -0.14 -1.43 9.18 37.15 0.34 -1.09 16 9 C -0.14 -1.32 9.18 37.16 0.34 -0.98 16 10 C -0.27 -3.60 3.82 -105.07 -0.40 -4.00 16 11 C 0.59 9.48 6.45 -12.52 -0.08 9.39 16 12 O -0.53 -10.66 16.39 5.28 0.09 -10.58 16 13 N -0.58 -8.98 2.80 -168.70 -0.47 -9.45 16 14 C 0.12 1.47 6.11 -4.43 -0.03 1.45 16 15 C -0.13 -1.71 6.10 -26.74 -0.16 -1.88 16 16 C -0.13 -2.22 5.30 -27.10 -0.14 -2.37 16 17 C 0.16 3.26 3.25 -67.42 -0.22 3.04 16 18 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.14 2.55 2.74 -68.37 -0.19 2.36 16 20 H 0.09 1.94 7.10 -51.93 -0.37 1.57 16 21 C -0.15 -2.93 6.44 -25.62 -0.17 -3.10 16 22 C 0.18 4.36 5.39 -3.28 -0.02 4.35 16 23 N -0.60 -14.81 2.95 -163.99 -0.48 -15.29 16 24 C -0.23 -6.18 10.27 -15.06 -0.15 -6.34 16 25 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 26 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 27 N -0.92 -26.81 10.29 55.49 0.57 -26.24 16 28 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 32 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.91 7.96 -51.93 -0.41 0.50 16 35 H 0.09 1.12 7.57 -51.93 -0.39 0.73 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.91 5.98 -51.93 -0.31 0.60 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.06 1.14 8.01 -51.92 -0.42 0.72 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.05 1.43 7.25 -51.93 -0.38 1.05 16 51 H 0.04 1.04 7.60 -51.93 -0.39 0.64 16 52 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -32.88 407.82 -10.64 -43.52 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -10.20 Total: 0.53 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.94 Total: 1.48 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.29 Total: -58.03 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.88 -10.64 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049839173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.656 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds