Wall clock time and date at job start Wed Apr 1 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34264 * 126.28913 * 2 1 4 4 H 0.96998 * 125.75009 * 359.96451 * 3 2 1 5 5 N 1.39930 * 108.48899 * 179.97438 * 3 2 1 6 6 C 1.30446 * 108.89794 * 359.75690 * 5 3 2 7 7 C 1.50707 * 125.98607 * 180.25859 * 6 5 3 8 8 C 1.52994 * 109.47176 * 300.14030 * 7 6 5 9 9 C 1.53000 * 109.46956 * 60.14497 * 7 6 5 10 10 C 1.38045 * 126.29290 * 179.97438 * 2 1 3 11 11 C 1.47425 * 126.41351 * 359.97438 * 10 2 1 12 12 O 1.21598 * 120.00144 * 90.02559 * 11 10 2 13 13 N 1.34777 * 119.99846 * 270.02278 * 11 10 2 14 14 C 1.45730 * 117.76229 * 0.02562 * 13 11 10 15 15 C 1.53051 * 109.56102 * 218.89400 * 14 13 11 16 16 C 1.52939 * 108.49391 * 306.20089 * 15 14 13 17 17 C 1.52336 * 109.87799 * 65.93044 * 16 15 14 18 18 H 1.08994 * 110.92438 * 66.63366 * 17 16 15 19 19 C 1.44187 * 117.76135 * 180.02562 * 13 11 10 20 20 H 1.09003 * 109.23032 * 27.35944 * 19 13 11 21 21 C 1.54067 * 111.76527 * 266.46409 * 19 13 11 22 22 C 1.54056 * 103.74243 * 206.74022 * 21 19 13 23 23 N 1.46879 * 107.70874 * 17.12818 * 22 21 19 24 24 C 1.36945 * 125.58340 * 182.96982 * 23 22 21 25 25 H 1.07997 * 119.99756 * 180.02562 * 24 23 22 26 26 C 1.38805 * 119.99878 * 0.02576 * 24 23 22 27 27 N 1.31624 * 120.00257 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47187 * 179.97438 * 28 26 24 30 30 H 1.48494 * 109.47141 * 300.00154 * 28 26 24 31 31 H 1.48498 * 109.47018 * 60.00200 * 28 26 24 32 32 H 1.09008 * 109.46733 * 270.01983 * 1 2 3 33 33 H 1.08995 * 109.47199 * 30.01796 * 1 2 3 34 34 H 1.08998 * 109.46938 * 150.02805 * 1 2 3 35 35 H 1.09005 * 109.46831 * 180.14087 * 7 6 5 36 36 H 1.09005 * 109.47194 * 60.00279 * 8 7 6 37 37 H 1.09000 * 109.46800 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47500 * 300.00168 * 8 7 6 39 39 H 1.08998 * 109.47314 * 59.99697 * 9 7 6 40 40 H 1.09005 * 109.46727 * 179.97438 * 9 7 6 41 41 H 1.08992 * 109.47310 * 299.99523 * 9 7 6 42 42 H 1.09006 * 109.45551 * 338.91980 * 14 13 11 43 43 H 1.09005 * 109.45768 * 98.88350 * 14 13 11 44 44 H 1.09006 * 109.63304 * 65.89857 * 15 14 13 45 45 H 1.09001 * 109.63684 * 186.29026 * 15 14 13 46 46 H 1.08997 * 109.41755 * 186.08946 * 16 15 14 47 47 H 1.09008 * 109.41181 * 305.95664 * 16 15 14 48 48 H 1.09003 * 110.57485 * 88.17480 * 21 19 13 49 49 H 1.08996 * 110.69826 * 325.36078 * 21 19 13 50 50 H 1.09004 * 109.81096 * 257.58282 * 22 21 19 51 51 H 1.08999 * 109.81376 * 136.68434 * 22 21 19 52 52 H 0.97001 * 119.99885 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0026 2.0049 -0.0005 5 7 3.6340 0.6545 0.0006 6 6 3.6590 -0.6497 0.0062 7 6 4.8952 -1.5117 0.0142 8 6 5.7323 -1.2146 -1.2315 9 6 5.7198 -1.2091 1.2670 10 6 2.3242 -1.1126 0.0005 11 6 1.8859 -2.5202 0.0017 12 8 1.7052 -3.1017 -1.0509 13 7 1.6856 -3.1627 1.1694 14 6 1.9161 -2.4192 2.4014 15 6 2.5798 -3.3327 3.4346 16 6 1.7239 -4.5905 3.5911 17 6 1.7390 -5.3917 2.2955 18 1 2.7331 -5.7921 2.0970 19 6 1.2578 -4.5385 1.1143 20 1 1.6138 -4.9883 0.1873 21 6 -0.2764 -4.6629 1.1799 22 6 -0.5047 -6.0592 1.7893 23 7 0.7543 -6.4851 2.4146 24 6 0.9763 -7.6958 3.0148 25 1 1.9410 -7.9148 3.4481 26 6 -0.0385 -8.6414 3.0662 27 7 -1.2141 -8.3747 2.5377 28 14 0.2646 -10.2932 3.8843 29 1 -0.9683 -11.1172 3.8076 30 1 1.3733 -10.9942 3.1884 31 1 0.6296 -10.0808 5.3080 32 1 -0.3633 0.0004 1.0278 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5134 35 1 4.6054 -2.5625 0.0151 36 1 6.0221 -0.1638 -1.2323 37 1 6.6266 -1.8377 -1.2253 38 1 5.1448 -1.4302 -2.1239 39 1 5.1234 -1.4208 2.1545 40 1 6.6137 -1.8329 1.2730 41 1 6.0096 -0.1584 1.2662 42 1 2.5675 -1.5696 2.1963 43 1 0.9640 -2.0606 2.7927 44 1 3.5773 -3.6088 3.0923 45 1 2.6514 -2.8135 4.3903 46 1 2.1231 -5.2020 4.4002 47 1 0.6985 -4.3041 3.8252 48 1 -0.7085 -4.6057 0.1808 49 1 -0.6983 -3.8907 1.8232 50 1 -0.7844 -6.7632 1.0054 51 1 -1.2924 -6.0100 2.5410 52 1 -1.9231 -9.0357 2.5733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049839173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:21 Heat of formation + Delta-G solvation = 33.126465 kcal Electronic energy + Delta-G solvation = -32704.537768 eV Core-core repulsion = 28704.846121 eV Total energy + Delta-G solvation = -3999.691647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.70394 -41.35806 -39.20501 -36.85434 -36.69863 -34.24465 -33.90235 -33.05877 -31.94273 -30.73074 -29.89226 -28.33288 -28.00770 -26.43291 -25.86979 -24.25444 -23.64803 -23.16906 -21.99311 -20.71022 -20.05800 -19.47428 -18.83074 -18.65878 -17.81346 -16.88607 -16.76355 -16.18098 -16.06699 -15.86425 -15.64120 -15.25863 -15.24265 -15.09042 -14.95638 -14.34351 -14.21452 -14.19427 -13.95576 -13.70748 -13.52860 -13.47708 -13.35020 -13.10999 -12.98346 -12.79583 -12.61345 -12.42942 -12.31478 -12.29156 -12.12325 -12.07838 -12.01195 -11.91304 -11.64659 -11.55474 -11.54142 -11.17053 -10.90998 -10.66797 -10.36355 -9.62629 -9.57294 -8.88585 -7.81394 -5.17959 0.69700 1.36693 1.47536 1.50776 1.51349 1.56882 1.74233 2.13392 2.52526 3.34105 3.36815 3.51036 3.61488 3.77822 3.88440 3.92598 4.00179 4.07170 4.13045 4.16529 4.20258 4.23820 4.36962 4.38516 4.50401 4.59771 4.63210 4.63812 4.67516 4.82085 4.82314 4.87751 4.89080 4.95871 4.98236 5.00737 5.01819 5.06991 5.11871 5.21508 5.28934 5.35423 5.37494 5.44765 5.47544 5.57940 5.66361 5.71951 5.76395 6.21504 6.29534 6.40146 6.59319 7.11604 7.18314 7.78645 8.42898 9.28279 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.003157 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.875432 B = 8868.077118 C = 9494.864551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.145 3.855 3 N -0.447 5.447 4 H 0.458 0.542 5 N -0.300 5.300 6 C 0.121 3.879 7 C -0.024 4.024 8 C -0.137 4.137 9 C -0.134 4.134 10 C -0.304 4.304 11 C 0.593 3.407 12 O -0.581 6.581 13 N -0.573 5.573 14 C 0.115 3.885 15 C -0.120 4.120 16 C -0.118 4.118 17 C 0.158 3.842 18 H 0.047 0.953 19 C 0.153 3.847 20 H 0.062 0.938 21 C -0.133 4.133 22 C 0.193 3.807 23 N -0.615 5.615 24 C -0.236 4.236 25 H 0.084 0.916 26 C -0.065 4.065 27 N -0.951 5.951 28 Si 0.977 3.023 29 H -0.297 1.297 30 H -0.279 1.279 31 H -0.275 1.275 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.011 0.989 51 H 0.010 0.990 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.965 23.932 -0.915 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.011 3.989 3 N -0.155 5.155 4 H 0.306 0.694 5 N -0.122 5.122 6 C -0.046 4.046 7 C -0.044 4.044 8 C -0.194 4.194 9 C -0.192 4.192 10 C -0.319 4.319 11 C 0.381 3.619 12 O -0.461 6.461 13 N -0.303 5.303 14 C -0.007 4.007 15 C -0.158 4.158 16 C -0.157 4.157 17 C 0.051 3.949 18 H 0.065 0.935 19 C 0.048 3.952 20 H 0.080 0.920 21 C -0.172 4.172 22 C 0.067 3.933 23 N -0.340 5.340 24 C -0.365 4.365 25 H 0.102 0.898 26 C -0.257 4.257 27 N -0.600 5.600 28 Si 0.806 3.194 29 H -0.223 1.223 30 H -0.205 1.205 31 H -0.201 1.201 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.121 0.879 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.029 0.971 51 H 0.029 0.971 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.460 24.482 -1.388 26.282 hybrid contribution -1.131 -1.850 0.059 2.170 sum 8.328 22.631 -1.329 24.152 Atomic orbital electron populations 1.20707 0.84537 1.05171 1.05429 1.21613 0.95439 0.86062 0.95741 1.45967 1.03202 1.08860 1.57489 0.69418 1.76983 0.96781 1.11897 1.26500 1.22346 0.93933 0.91399 0.96956 1.19734 0.90152 0.96211 0.98348 1.21758 0.99524 1.02680 0.95474 1.21768 0.99641 1.02602 0.95199 1.19717 0.94083 0.92465 1.25594 1.17863 0.75470 0.85716 0.82871 1.90751 1.53292 1.69010 1.33050 1.47008 1.65546 1.10724 1.07029 1.21628 1.01386 0.94430 0.83257 1.21798 0.98892 0.95274 0.99873 1.21770 0.99811 0.96505 0.97661 1.21006 0.92469 0.88000 0.93438 0.93499 1.20680 0.94321 0.81532 0.98706 0.91953 1.22773 0.95814 0.98045 1.00564 1.20713 0.87930 0.90471 0.94158 1.44729 1.09422 1.13060 1.66800 1.19356 0.97722 0.90471 1.28938 0.89841 1.25621 0.95873 1.02026 1.02222 1.70190 1.03596 1.35205 1.51044 0.85168 0.76368 0.79364 0.78524 1.22284 1.20523 1.20058 0.87477 0.87343 0.91142 0.91388 0.91568 0.90361 0.94088 0.92266 0.90611 0.91689 0.88531 0.90840 0.91157 0.87940 0.92834 0.93112 0.91969 0.90486 0.97084 0.97144 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.25 71.24 0.73 -0.55 16 2 C 0.15 2.66 7.29 42.14 0.31 2.96 16 3 N -0.45 -6.77 7.29 -46.79 -0.34 -7.11 16 4 H 0.46 3.34 8.96 -213.43 -1.91 1.43 16 5 N -0.30 -6.25 12.63 -46.67 -0.59 -6.84 16 6 C 0.12 2.82 5.35 43.52 0.23 3.05 16 7 C -0.02 -0.51 3.31 -11.54 -0.04 -0.55 16 8 C -0.14 -2.64 9.18 71.98 0.66 -1.98 16 9 C -0.13 -2.21 9.18 71.98 0.66 -1.55 16 10 C -0.30 -7.64 3.82 -20.15 -0.08 -7.72 16 11 C 0.59 18.98 6.45 86.66 0.56 19.54 16 12 O -0.58 -23.90 16.39 -4.02 -0.07 -23.97 16 13 N -0.57 -17.32 2.80 -805.91 -2.26 -19.58 16 14 C 0.11 2.60 6.11 86.54 0.53 3.12 16 15 C -0.12 -2.77 6.10 30.59 0.19 -2.58 16 16 C -0.12 -3.92 5.30 30.35 0.16 -3.76 16 17 C 0.16 6.44 3.25 44.71 0.15 6.58 16 18 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 19 C 0.15 5.86 2.74 45.94 0.13 5.99 16 20 H 0.06 2.76 7.10 -2.39 -0.02 2.75 16 21 C -0.13 -5.32 6.44 31.31 0.20 -5.11 16 22 C 0.19 9.85 5.39 86.66 0.47 10.31 16 23 N -0.62 -31.64 2.95 -672.74 -1.98 -33.62 16 24 C -0.24 -13.18 10.27 84.03 0.86 -12.31 16 25 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 26 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 27 N -0.95 -57.82 10.29 21.65 0.22 -57.59 16 28 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 29 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 30 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 31 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 32 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.27 7.96 -2.39 -0.02 1.26 16 35 H 0.07 1.72 7.57 -2.38 -0.02 1.70 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.92 5.98 -2.38 -0.01 1.91 16 43 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.05 1.81 8.01 -2.38 -0.02 1.79 16 48 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 50 H 0.01 0.64 7.25 -2.38 -0.02 0.62 16 51 H 0.01 0.58 7.60 -2.39 -0.02 0.56 16 52 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -75.69 407.82 2.20 -73.49 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -1.00 Total: 14.97 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.18 Total: 12.23 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -4.95 Total: -124.74 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.07 Total: -23.97 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.69 2.20 -73.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049839173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.618 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds