Wall clock time and date at job start Wed Apr 1 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89969 * 2 1 4 4 N 1.40078 * 108.20890 * 179.73651 * 3 2 1 5 5 H 0.96997 * 126.04391 * 180.02562 * 4 3 2 6 6 C 1.34957 * 107.92650 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.12858 * 180.02562 * 6 4 3 8 8 C 1.35317 * 107.74055 * 359.97438 * 6 4 3 9 9 C 1.50701 * 126.03591 * 180.02562 * 8 6 4 10 10 C 1.52992 * 109.47356 * 269.97605 * 9 8 6 11 11 C 1.50701 * 109.47356 * 180.02562 * 10 9 8 12 12 O 1.21277 * 119.99855 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00144 * 179.97438 * 11 10 9 14 14 C 1.47847 * 122.23026 * 359.71285 * 13 11 10 15 15 C 1.53500 * 111.08091 * 128.30022 * 14 13 11 16 16 C 1.53869 * 111.79237 * 47.69119 * 15 14 13 17 17 C 1.51082 * 107.34210 * 303.73100 * 16 15 14 18 18 H 1.08999 * 108.74388 * 308.52160 * 17 16 15 19 19 C 1.45723 * 122.22705 * 180.02562 * 13 11 10 20 20 H 1.08996 * 111.06802 * 119.46528 * 19 13 11 21 21 C 1.53432 * 116.38233 * 350.95948 * 19 13 11 22 22 C 1.56419 * 101.24399 * 207.70885 * 21 19 13 23 23 N 1.45029 * 118.75471 * 183.59381 * 17 16 15 24 24 C 1.36933 * 126.56390 * 29.03674 * 23 17 16 25 25 H 1.08003 * 119.99882 * 359.97438 * 24 23 17 26 26 C 1.38813 * 120.00321 * 180.02562 * 24 23 17 27 27 N 1.31620 * 120.00008 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 120.00184 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.46981 * 359.97438 * 28 26 24 30 30 H 1.48492 * 109.47290 * 119.99214 * 28 26 24 31 31 H 1.48503 * 109.46959 * 239.99514 * 28 26 24 32 32 H 1.09005 * 109.46832 * 90.02696 * 1 2 3 33 33 H 1.09004 * 109.46837 * 210.02501 * 1 2 3 34 34 H 1.08992 * 109.47200 * 330.02599 * 1 2 3 35 35 H 1.09003 * 109.46725 * 89.97269 * 7 6 4 36 36 H 1.09001 * 109.46601 * 209.97314 * 7 6 4 37 37 H 1.08994 * 109.46686 * 329.97420 * 7 6 4 38 38 H 1.09002 * 109.46861 * 29.97707 * 9 8 6 39 39 H 1.09005 * 109.47196 * 149.97635 * 9 8 6 40 40 H 1.09002 * 109.47219 * 299.99882 * 10 9 8 41 41 H 1.09000 * 109.47222 * 60.00230 * 10 9 8 42 42 H 1.08994 * 109.16088 * 247.94688 * 14 13 11 43 43 H 1.09004 * 109.15925 * 7.12972 * 14 13 11 44 44 H 1.09005 * 108.40966 * 287.43498 * 15 14 13 45 45 H 1.09002 * 109.40605 * 168.61510 * 15 14 13 46 46 H 1.09002 * 109.88313 * 184.27414 * 16 15 14 47 47 H 1.08994 * 109.88147 * 63.19210 * 16 15 14 48 48 H 1.09003 * 110.98842 * 325.35958 * 21 19 13 49 49 H 1.08994 * 110.98835 * 89.16743 * 21 19 13 50 50 H 1.09001 * 109.27468 * 262.39083 * 22 21 19 51 51 H 1.08993 * 110.35427 * 141.37173 * 22 21 19 52 52 H 0.96999 * 120.00265 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0061 5 1 4.3908 1.2080 0.0078 6 6 3.6143 -0.7153 0.0092 7 6 4.8351 -1.5988 0.0165 8 6 2.3272 -1.1329 0.0058 9 6 1.8600 -2.5657 0.0080 10 6 1.7064 -3.0543 -1.4337 11 6 1.2386 -4.4869 -1.4315 12 8 1.0465 -5.0604 -0.3803 13 7 1.0328 -5.1304 -2.5977 14 6 1.2444 -4.4769 -3.9069 15 6 2.1530 -5.3256 -4.8071 16 6 1.7152 -6.8004 -4.8327 17 6 1.6996 -7.2904 -3.4037 18 1 2.6572 -7.0515 -2.9410 19 6 0.5804 -6.5146 -2.6522 20 1 -0.3753 -6.5944 -3.1700 21 6 0.5535 -7.2760 -1.3203 22 6 0.7606 -8.7482 -1.8064 23 7 1.3944 -8.6849 -3.1475 24 6 1.6419 -9.7410 -3.9833 25 1 2.1096 -9.5727 -4.9422 26 6 1.2907 -11.0277 -3.5987 27 7 0.7203 -11.2328 -2.4304 28 14 1.6290 -12.4684 -4.7387 29 1 2.2734 -11.9750 -5.9822 30 1 2.5322 -13.4335 -4.0620 31 1 0.3497 -13.1419 -5.0782 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5134 35 1 5.1252 -1.8091 1.0459 36 1 4.6096 -2.5342 -0.4958 37 1 5.6532 -1.0922 -0.4954 38 1 2.5919 -3.1857 0.5257 39 1 0.8995 -2.6339 0.5190 40 1 0.9745 -2.4343 -1.9515 41 1 2.6668 -2.9862 -1.9447 42 1 0.2825 -4.3525 -4.4042 43 1 1.6939 -3.4965 -3.7489 44 1 3.1718 -5.2632 -4.4246 45 1 2.1292 -4.9293 -5.8223 46 1 2.4231 -7.3872 -5.4181 47 1 0.7176 -6.8835 -5.2640 48 1 1.3739 -6.9624 -0.6747 49 1 -0.4059 -7.1508 -0.8185 50 1 -0.2076 -9.2441 -1.8748 51 1 1.4072 -9.2883 -1.1150 52 1 0.4752 -12.1319 -2.1615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049896548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:40 Heat of formation + Delta-G solvation = 58.475490 kcal Electronic energy + Delta-G solvation = -31462.587158 eV Core-core repulsion = 27463.994728 eV Total energy + Delta-G solvation = -3998.592430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60740 -40.23237 -37.81532 -35.32832 -34.30326 -33.59812 -32.54515 -32.16517 -30.61948 -28.95731 -28.22376 -28.02539 -27.27499 -24.99743 -24.45467 -23.33468 -21.45832 -20.73932 -20.35802 -19.66253 -19.39410 -18.62569 -17.52947 -16.75692 -16.07617 -15.66518 -15.50689 -15.32837 -14.79695 -14.41341 -14.19625 -14.08403 -13.88100 -13.63018 -13.59910 -13.39098 -13.27455 -12.89240 -12.66992 -12.58417 -12.48570 -12.33516 -12.19321 -12.11279 -11.96986 -11.74384 -11.55311 -11.12136 -11.09324 -10.84702 -10.67985 -10.60655 -10.47978 -10.37068 -10.05278 -9.95376 -9.80097 -9.58795 -9.46974 -8.94964 -8.58687 -8.49285 -8.15279 -6.79794 -5.67616 -3.01776 1.60823 2.46344 2.60908 2.91983 3.26960 3.41232 3.46231 3.48938 4.37820 4.42594 4.51458 4.66551 4.74620 4.86973 4.98214 5.06360 5.09613 5.13087 5.19325 5.29487 5.36691 5.40905 5.42515 5.47200 5.48800 5.50742 5.58254 5.64679 5.73383 5.75178 5.80647 5.88576 5.89625 6.03323 6.09319 6.13188 6.17988 6.28549 6.32172 6.42703 6.50057 6.60806 6.76145 6.82709 6.94369 7.04459 7.24072 7.47361 7.61707 7.69477 7.79529 7.88157 8.27873 8.52117 9.22008 9.85940 10.54637 11.44367 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002355 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.663669 B =11888.160804 C =12077.095163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.300 5.300 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.091 3.909 7 C -0.096 4.096 8 C -0.231 4.231 9 C -0.024 4.024 10 C -0.132 4.132 11 C 0.514 3.486 12 O -0.533 6.533 13 N -0.602 5.602 14 C 0.111 3.889 15 C -0.129 4.129 16 C -0.116 4.116 17 C 0.159 3.841 18 H 0.017 0.983 19 C 0.117 3.883 20 H 0.076 0.924 21 C -0.130 4.130 22 C 0.172 3.828 23 N -0.593 5.593 24 C -0.224 4.224 25 H 0.079 0.921 26 C -0.008 4.008 27 N -0.919 5.919 28 Si 0.909 3.091 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.039 0.961 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 23.753 1.346 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.123 5.123 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.037 4.037 7 C -0.155 4.155 8 C -0.242 4.242 9 C -0.062 4.062 10 C -0.173 4.173 11 C 0.302 3.698 12 O -0.410 6.410 13 N -0.335 5.335 14 C -0.012 4.012 15 C -0.168 4.168 16 C -0.154 4.154 17 C 0.050 3.950 18 H 0.034 0.966 19 C 0.012 3.988 20 H 0.094 0.906 21 C -0.168 4.168 22 C 0.048 3.952 23 N -0.318 5.318 24 C -0.353 4.353 25 H 0.097 0.903 26 C -0.205 4.205 27 N -0.567 5.567 28 Si 0.740 3.260 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.155 24.468 1.924 24.893 hybrid contribution 0.664 -1.271 -0.805 1.644 sum 4.819 23.197 1.119 23.719 Atomic orbital electron populations 1.20223 0.86708 1.03487 1.03116 1.22258 0.96965 0.90221 0.98725 1.77273 0.86496 1.22398 1.26167 1.46138 1.07264 1.04858 1.60462 0.72036 1.20936 0.97071 0.84826 1.00912 1.20510 0.92677 0.98588 1.03689 1.19764 0.91076 0.96408 1.16937 1.19588 1.02541 0.89239 0.94881 1.21692 1.02730 0.93378 0.99455 1.20577 0.77638 0.88376 0.83210 1.90696 1.51683 1.67787 1.30835 1.48051 1.66418 1.13654 1.05372 1.21819 0.99958 0.95766 0.83689 1.22028 0.99512 0.96301 0.98949 1.21430 1.01701 0.93611 0.98676 1.20766 0.94910 0.86294 0.93043 0.96552 1.22400 0.97834 0.78893 0.99650 0.90613 1.23124 1.02354 0.96499 0.94868 1.21907 0.98050 0.89886 0.85399 1.44106 1.70793 0.99949 1.16955 1.19024 1.33604 0.84868 0.97757 0.90347 1.24807 1.01078 0.97355 0.97231 1.69961 1.46581 1.20152 1.19968 0.86083 0.77379 0.82821 0.79704 1.20572 1.21810 1.21810 0.90424 0.90052 0.90982 0.89953 0.89210 0.91099 0.90600 0.90345 0.89380 0.89554 0.91806 0.90273 0.92022 0.91000 0.91524 0.91816 0.89860 0.92091 0.92777 0.94248 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.26 36.00 0.37 -0.25 16 2 C 0.08 0.90 7.22 -82.40 -0.59 0.30 16 3 N -0.30 -3.38 12.70 33.67 0.43 -2.95 16 4 N -0.48 -4.19 7.36 33.48 0.25 -3.94 16 5 H 0.44 2.44 8.96 -182.62 -1.64 0.81 16 6 C 0.09 0.80 7.21 -82.26 -0.59 0.21 16 7 C -0.10 -0.59 10.04 36.01 0.36 -0.23 16 8 C -0.23 -2.34 5.35 -105.05 -0.56 -2.90 16 9 C -0.02 -0.25 4.41 -27.89 -0.12 -0.37 16 10 C -0.13 -1.37 4.10 -27.89 -0.11 -1.48 16 11 C 0.51 7.53 7.70 -10.98 -0.08 7.45 16 12 O -0.53 -9.67 12.78 5.56 0.07 -9.60 16 13 N -0.60 -8.98 2.91 -163.50 -0.48 -9.46 16 14 C 0.11 1.25 6.37 -3.04 -0.02 1.23 16 15 C -0.13 -1.57 5.95 -26.02 -0.15 -1.73 16 16 C -0.12 -1.94 5.43 -27.24 -0.15 -2.09 16 17 C 0.16 3.28 2.60 -68.33 -0.18 3.10 16 18 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 19 C 0.12 2.18 3.27 -66.77 -0.22 1.97 16 20 H 0.08 1.46 8.13 -51.93 -0.42 1.03 16 21 C -0.13 -2.74 5.14 -24.67 -0.13 -2.87 16 22 C 0.17 4.35 5.49 -1.12 -0.01 4.34 16 23 N -0.59 -15.15 3.35 -162.58 -0.54 -15.69 16 24 C -0.22 -6.17 9.93 -15.06 -0.15 -6.32 16 25 H 0.08 2.07 7.28 -52.48 -0.38 1.69 16 26 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 27 N -0.92 -27.26 10.46 55.49 0.58 -26.68 16 28 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 31 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.61 7.25 -51.93 -0.38 0.23 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.58 7.77 -51.93 -0.40 0.18 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 39 H 0.08 0.88 7.21 -51.93 -0.37 0.51 16 40 H 0.09 0.79 8.01 -51.93 -0.42 0.38 16 41 H 0.09 0.79 7.77 -51.93 -0.40 0.38 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.68 6.18 -51.93 -0.32 0.36 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 47 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 48 H 0.08 1.83 6.15 -51.93 -0.32 1.51 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.05 1.49 7.19 -51.93 -0.37 1.12 16 51 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 52 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -34.25 401.10 -11.10 -45.36 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -9.99 Total: -0.16 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.44 Total: 0.03 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.23 Total: -58.73 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.25 -11.10 -45.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049896548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.831 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds