Wall clock time and date at job start Wed Apr 1 2020 03:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89969 * 2 1 4 4 N 1.40078 * 108.20890 * 179.73651 * 3 2 1 5 5 H 0.96997 * 126.04391 * 180.02562 * 4 3 2 6 6 C 1.34957 * 107.92650 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.12858 * 180.02562 * 6 4 3 8 8 C 1.35317 * 107.74055 * 359.97438 * 6 4 3 9 9 C 1.50701 * 126.03591 * 180.02562 * 8 6 4 10 10 C 1.52992 * 109.47356 * 269.97605 * 9 8 6 11 11 C 1.50701 * 109.47356 * 180.02562 * 10 9 8 12 12 O 1.21277 * 119.99855 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00144 * 179.97438 * 11 10 9 14 14 C 1.47847 * 122.23026 * 359.71285 * 13 11 10 15 15 C 1.53500 * 111.08091 * 128.30022 * 14 13 11 16 16 C 1.53869 * 111.79237 * 47.69119 * 15 14 13 17 17 C 1.51082 * 107.34210 * 303.73100 * 16 15 14 18 18 H 1.08999 * 108.74388 * 308.52160 * 17 16 15 19 19 C 1.45723 * 122.22705 * 180.02562 * 13 11 10 20 20 H 1.08996 * 111.06802 * 119.46528 * 19 13 11 21 21 C 1.53432 * 116.38233 * 350.95948 * 19 13 11 22 22 C 1.56419 * 101.24399 * 207.70885 * 21 19 13 23 23 N 1.45029 * 118.75471 * 183.59381 * 17 16 15 24 24 C 1.36933 * 126.56390 * 29.03674 * 23 17 16 25 25 H 1.08003 * 119.99882 * 359.97438 * 24 23 17 26 26 C 1.38813 * 120.00321 * 180.02562 * 24 23 17 27 27 N 1.31620 * 120.00008 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 120.00184 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.46981 * 359.97438 * 28 26 24 30 30 H 1.48492 * 109.47290 * 119.99214 * 28 26 24 31 31 H 1.48503 * 109.46959 * 239.99514 * 28 26 24 32 32 H 1.09005 * 109.46832 * 90.02696 * 1 2 3 33 33 H 1.09004 * 109.46837 * 210.02501 * 1 2 3 34 34 H 1.08992 * 109.47200 * 330.02599 * 1 2 3 35 35 H 1.09003 * 109.46725 * 89.97269 * 7 6 4 36 36 H 1.09001 * 109.46601 * 209.97314 * 7 6 4 37 37 H 1.08994 * 109.46686 * 329.97420 * 7 6 4 38 38 H 1.09002 * 109.46861 * 29.97707 * 9 8 6 39 39 H 1.09005 * 109.47196 * 149.97635 * 9 8 6 40 40 H 1.09002 * 109.47219 * 299.99882 * 10 9 8 41 41 H 1.09000 * 109.47222 * 60.00230 * 10 9 8 42 42 H 1.08994 * 109.16088 * 247.94688 * 14 13 11 43 43 H 1.09004 * 109.15925 * 7.12972 * 14 13 11 44 44 H 1.09005 * 108.40966 * 287.43498 * 15 14 13 45 45 H 1.09002 * 109.40605 * 168.61510 * 15 14 13 46 46 H 1.09002 * 109.88313 * 184.27414 * 16 15 14 47 47 H 1.08994 * 109.88147 * 63.19210 * 16 15 14 48 48 H 1.09003 * 110.98842 * 325.35958 * 21 19 13 49 49 H 1.08994 * 110.98835 * 89.16743 * 21 19 13 50 50 H 1.09001 * 109.27468 * 262.39083 * 22 21 19 51 51 H 1.08993 * 110.35427 * 141.37173 * 22 21 19 52 52 H 0.96999 * 120.00265 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0061 5 1 4.3908 1.2080 0.0078 6 6 3.6143 -0.7153 0.0092 7 6 4.8351 -1.5988 0.0165 8 6 2.3272 -1.1329 0.0058 9 6 1.8600 -2.5657 0.0080 10 6 1.7064 -3.0543 -1.4337 11 6 1.2386 -4.4869 -1.4315 12 8 1.0465 -5.0604 -0.3803 13 7 1.0328 -5.1304 -2.5977 14 6 1.2444 -4.4769 -3.9069 15 6 2.1530 -5.3256 -4.8071 16 6 1.7152 -6.8004 -4.8327 17 6 1.6996 -7.2904 -3.4037 18 1 2.6572 -7.0515 -2.9410 19 6 0.5804 -6.5146 -2.6522 20 1 -0.3753 -6.5944 -3.1700 21 6 0.5535 -7.2760 -1.3203 22 6 0.7606 -8.7482 -1.8064 23 7 1.3944 -8.6849 -3.1475 24 6 1.6419 -9.7410 -3.9833 25 1 2.1096 -9.5727 -4.9422 26 6 1.2907 -11.0277 -3.5987 27 7 0.7203 -11.2328 -2.4304 28 14 1.6290 -12.4684 -4.7387 29 1 2.2734 -11.9750 -5.9822 30 1 2.5322 -13.4335 -4.0620 31 1 0.3497 -13.1419 -5.0782 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5134 35 1 5.1252 -1.8091 1.0459 36 1 4.6096 -2.5342 -0.4958 37 1 5.6532 -1.0922 -0.4954 38 1 2.5919 -3.1857 0.5257 39 1 0.8995 -2.6339 0.5190 40 1 0.9745 -2.4343 -1.9515 41 1 2.6668 -2.9862 -1.9447 42 1 0.2825 -4.3525 -4.4042 43 1 1.6939 -3.4965 -3.7489 44 1 3.1718 -5.2632 -4.4246 45 1 2.1292 -4.9293 -5.8223 46 1 2.4231 -7.3872 -5.4181 47 1 0.7176 -6.8835 -5.2640 48 1 1.3739 -6.9624 -0.6747 49 1 -0.4059 -7.1508 -0.8185 50 1 -0.2076 -9.2441 -1.8748 51 1 1.4072 -9.2883 -1.1150 52 1 0.4752 -12.1319 -2.1615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049896548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:39 Heat of formation + Delta-G solvation = 36.977026 kcal Electronic energy + Delta-G solvation = -31463.519402 eV Core-core repulsion = 27463.994728 eV Total energy + Delta-G solvation = -3999.524674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31100 -41.54650 -39.24698 -36.81806 -35.18966 -34.26882 -34.11955 -33.77359 -31.55433 -30.58039 -29.61120 -28.81049 -27.99745 -26.45671 -26.05708 -24.45022 -22.78573 -22.28887 -21.39283 -21.04683 -20.13843 -19.82025 -18.59027 -18.18441 -17.22705 -17.14487 -16.68578 -16.56609 -16.09860 -15.77542 -15.47465 -15.33427 -15.09714 -14.79125 -14.48284 -14.25666 -14.18705 -14.09033 -13.89660 -13.56514 -13.38973 -13.33603 -13.24271 -13.16561 -13.12930 -12.86943 -12.81964 -12.74368 -12.64440 -12.16210 -12.03667 -11.93764 -11.87924 -11.72657 -11.65355 -11.52980 -11.37500 -11.33358 -10.76291 -10.23715 -10.15070 -9.45361 -9.26459 -8.88724 -7.82773 -5.19532 0.92947 1.46208 1.47656 1.57749 1.71840 1.79396 2.00896 2.13218 2.51582 3.35887 3.40831 3.63418 3.78832 3.83541 3.97567 4.02777 4.10262 4.12277 4.18837 4.25047 4.30628 4.35065 4.40023 4.54120 4.60760 4.63348 4.67141 4.72684 4.73949 4.76371 4.81163 4.85214 4.91308 4.97523 5.07229 5.08540 5.15694 5.16989 5.20298 5.24468 5.31292 5.32186 5.41151 5.48220 5.50683 5.62708 5.67494 5.77319 5.80280 6.19973 6.48199 6.65504 6.78669 7.07014 7.36258 7.77408 8.47816 9.29166 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002355 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.663669 B =11888.160804 C =12077.095163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.076 3.924 3 N -0.331 5.331 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.099 3.901 7 C -0.096 4.096 8 C -0.249 4.249 9 C -0.015 4.015 10 C -0.117 4.117 11 C 0.509 3.491 12 O -0.575 6.575 13 N -0.603 5.603 14 C 0.106 3.894 15 C -0.120 4.120 16 C -0.112 4.112 17 C 0.153 3.847 18 H 0.001 0.999 19 C 0.132 3.868 20 H 0.074 0.926 21 C -0.112 4.112 22 C 0.182 3.818 23 N -0.613 5.613 24 C -0.229 4.229 25 H 0.089 0.911 26 C -0.072 4.072 27 N -0.955 5.955 28 Si 0.978 3.022 29 H -0.261 1.261 30 H -0.296 1.296 31 H -0.293 1.293 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.022 0.978 51 H -0.001 1.001 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 26.639 -0.975 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.156 5.156 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.030 4.030 7 C -0.154 4.154 8 C -0.260 4.260 9 C -0.054 4.054 10 C -0.157 4.157 11 C 0.299 3.701 12 O -0.455 6.455 13 N -0.336 5.336 14 C -0.015 4.015 15 C -0.158 4.158 16 C -0.151 4.151 17 C 0.045 3.955 18 H 0.019 0.981 19 C 0.026 3.974 20 H 0.092 0.908 21 C -0.151 4.151 22 C 0.057 3.943 23 N -0.338 5.338 24 C -0.358 4.358 25 H 0.107 0.893 26 C -0.264 4.264 27 N -0.605 5.605 28 Si 0.807 3.193 29 H -0.185 1.185 30 H -0.223 1.223 31 H -0.220 1.220 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.017 0.983 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.294 27.433 -0.441 27.943 hybrid contribution 0.380 -2.131 -0.022 2.165 sum 5.674 25.302 -0.463 25.935 Atomic orbital electron populations 1.20296 0.85575 1.03699 1.03999 1.22617 0.97949 0.90185 0.98289 1.77226 0.87584 1.23208 1.27547 1.46177 1.07124 1.05159 1.59803 0.70585 1.21308 0.97581 0.85009 0.99143 1.20606 0.92228 0.98160 1.04399 1.19750 0.91722 0.95879 1.18674 1.19427 1.01588 0.89494 0.94884 1.21662 1.04215 0.89958 0.99821 1.21399 0.76530 0.89847 0.82298 1.90681 1.53355 1.69075 1.32410 1.48155 1.66182 1.11876 1.07370 1.22168 1.01153 0.96735 0.81486 1.22007 0.99563 0.92813 1.01451 1.21411 1.01511 0.96879 0.95253 1.20962 0.94515 0.83916 0.96117 0.98148 1.21951 0.97096 0.81282 0.97023 0.90827 1.22849 1.02015 0.94046 0.96141 1.21609 0.95394 0.92065 0.85276 1.44375 1.70645 1.02045 1.16725 1.19444 1.32548 0.85633 0.98140 0.89307 1.25704 1.01690 1.00204 0.98843 1.70194 1.48228 1.20119 1.21948 0.85001 0.76869 0.79106 0.78335 1.18498 1.22331 1.22011 0.89135 0.89869 0.90752 0.89367 0.89349 0.88882 0.91799 0.91572 0.86997 0.87295 0.90104 0.86303 0.91805 0.87332 0.92707 0.92032 0.90716 0.91858 0.95992 0.98288 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.26 71.23 0.73 -0.39 16 2 C 0.08 1.46 7.22 43.10 0.31 1.77 16 3 N -0.33 -6.93 12.70 -47.39 -0.60 -7.53 16 4 N -0.47 -7.25 7.36 -48.00 -0.35 -7.60 16 5 H 0.45 4.02 8.96 -213.34 -1.91 2.11 16 6 C 0.10 1.50 7.21 41.40 0.30 1.80 16 7 C -0.10 -0.90 10.04 71.24 0.71 -0.19 16 8 C -0.25 -4.53 5.35 -20.14 -0.11 -4.64 16 9 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 10 C -0.12 -2.02 4.10 29.85 0.12 -1.90 16 11 C 0.51 13.95 7.70 87.66 0.67 14.62 16 12 O -0.58 -20.82 12.78 -3.02 -0.04 -20.86 16 13 N -0.60 -16.58 2.91 -789.58 -2.30 -18.88 16 14 C 0.11 1.88 6.37 86.29 0.55 2.43 16 15 C -0.12 -2.41 5.95 31.06 0.18 -2.22 16 16 C -0.11 -3.56 5.43 30.26 0.16 -3.39 16 17 C 0.15 6.29 2.60 45.52 0.12 6.41 16 18 H 0.00 0.05 8.05 -2.39 -0.02 0.03 16 19 C 0.13 4.91 3.27 46.16 0.15 5.06 16 20 H 0.07 2.79 8.13 -2.39 -0.02 2.77 16 21 C -0.11 -4.91 5.14 31.93 0.16 -4.75 16 22 C 0.18 9.77 5.49 87.19 0.48 10.25 16 23 N -0.61 -32.35 3.35 -668.28 -2.24 -34.59 16 24 C -0.23 -12.84 9.93 84.03 0.83 -12.00 16 25 H 0.09 4.68 7.28 -2.91 -0.02 4.66 16 26 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 27 N -0.96 -59.47 10.46 21.65 0.23 -59.25 16 28 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 29 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 30 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 31 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 32 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.08 1.15 7.25 -2.39 -0.02 1.13 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.90 7.77 -2.39 -0.02 0.88 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 1.38 7.73 -2.39 -0.02 1.36 16 39 H 0.07 1.43 7.21 -2.38 -0.02 1.42 16 40 H 0.11 1.49 8.01 -2.39 -0.02 1.47 16 41 H 0.11 1.47 7.77 -2.39 -0.02 1.45 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 43 H 0.12 1.27 6.18 -2.39 -0.01 1.25 16 44 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 47 H 0.06 1.97 8.11 -2.39 -0.02 1.95 16 48 H 0.07 3.42 6.15 -2.39 -0.01 3.41 16 49 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 50 H 0.02 1.29 7.19 -2.39 -0.02 1.28 16 51 H 0.00 -0.07 7.81 -2.39 -0.02 -0.09 16 52 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -79.47 401.10 1.72 -77.75 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -0.99 Total: 13.65 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.99 Total: 9.01 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -5.27 Total: -127.85 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.04 Total: -20.86 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -79.47 1.72 -77.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049896548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.730 kcal (2) G-P(sol) polarization free energy of solvation -79.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds