Wall clock time and date at job start Wed Apr 1 2020 03:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.90172 * 2 1 4 4 N 1.40081 * 108.20894 * 180.26223 * 3 2 1 5 5 H 0.97000 * 126.04374 * 179.74112 * 4 3 2 6 6 C 1.34951 * 107.92555 * 359.71571 * 4 3 2 7 7 C 1.50694 * 126.12942 * 179.97438 * 6 4 3 8 8 C 1.35322 * 107.74248 * 0.02562 * 6 4 3 9 9 C 1.50703 * 126.03668 * 180.02562 * 8 6 4 10 10 H 1.08994 * 109.47354 * 0.02562 * 9 8 6 11 11 C 1.52999 * 109.47069 * 119.99978 * 9 8 6 12 12 C 1.50697 * 109.46966 * 239.99517 * 9 8 6 13 13 O 1.21287 * 120.00027 * 349.60205 * 12 9 8 14 14 N 1.34776 * 120.00107 * 169.59635 * 12 9 8 15 15 C 1.44506 * 116.65009 * 353.53493 * 14 12 9 16 16 C 1.52536 * 112.18715 * 152.92595 * 15 14 12 17 17 C 1.51327 * 111.64643 * 43.79049 * 16 15 14 18 18 C 1.50764 * 113.46762 * 304.01308 * 17 16 15 19 19 H 1.09002 * 108.57407 * 169.46343 * 18 17 16 20 20 C 1.51321 * 109.57450 * 288.20071 * 18 17 16 21 21 N 1.46826 * 107.26283 * 140.22919 * 20 18 17 22 22 C 1.36930 * 125.38039 * 181.19343 * 21 20 18 23 23 H 1.07998 * 120.00632 * 186.01910 * 22 21 20 24 24 C 1.38814 * 119.99896 * 6.01863 * 22 21 20 25 25 N 1.31618 * 120.00291 * 7.42019 * 24 22 21 26 26 Si 1.86805 * 120.00092 * 187.42271 * 24 22 21 27 27 H 1.48500 * 109.47382 * 84.98786 * 26 24 22 28 28 H 1.48500 * 109.46863 * 204.99002 * 26 24 22 29 29 H 1.48504 * 109.46604 * 324.98826 * 26 24 22 30 30 C 1.46911 * 109.24388 * 1.19757 * 21 20 18 31 31 C 1.44118 * 116.64968 * 173.79830 * 14 12 9 32 32 H 1.09004 * 109.49672 * 74.95549 * 31 14 12 33 33 H 1.09001 * 109.46696 * 270.21071 * 1 2 3 34 34 H 1.09002 * 109.47293 * 30.20926 * 1 2 3 35 35 H 1.09000 * 109.47264 * 150.21067 * 1 2 3 36 36 H 1.09001 * 109.47181 * 270.02043 * 7 6 4 37 37 H 1.09000 * 109.47479 * 30.02544 * 7 6 4 38 38 H 1.09000 * 109.47283 * 150.02905 * 7 6 4 39 39 H 1.09005 * 109.47365 * 50.21161 * 11 9 8 40 40 H 1.09003 * 109.47280 * 170.20558 * 11 9 8 41 41 H 1.08996 * 109.46991 * 290.20976 * 11 9 8 42 42 H 1.09000 * 108.83175 * 275.58591 * 15 14 12 43 43 H 1.09006 * 108.82548 * 33.90827 * 15 14 12 44 44 H 1.08997 * 109.74157 * 282.86611 * 16 15 14 45 45 H 1.09008 * 108.53980 * 163.91145 * 16 15 14 46 46 H 1.08993 * 108.68421 * 182.97810 * 17 16 15 47 47 H 1.08998 * 108.57718 * 64.96804 * 17 16 15 48 48 H 1.09002 * 109.83484 * 20.89321 * 20 18 17 49 49 H 1.09001 * 110.09113 * 259.71345 * 20 18 17 50 50 H 0.96996 * 120.00304 * 180.02562 * 25 24 22 51 51 H 1.08996 * 110.08398 * 222.85979 * 30 21 20 52 52 H 1.09004 * 110.08419 * 101.28717 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 1 4.3909 1.2078 -0.0110 6 6 3.6143 -0.7154 -0.0034 7 6 4.8350 -1.5990 -0.0085 8 6 2.3271 -1.1330 0.0036 9 6 1.8599 -2.5658 0.0093 10 1 2.7242 -3.2298 0.0074 11 6 1.0219 -2.8240 1.2631 12 6 1.0230 -2.8261 -1.2166 13 8 0.6675 -1.9010 -1.9157 14 7 0.6697 -4.0869 -1.5361 15 6 1.2494 -5.1441 -0.7396 16 6 0.3628 -6.3845 -0.6957 17 6 -0.1932 -6.7219 -2.0621 18 6 -0.9563 -5.5871 -2.6967 19 1 -1.1564 -5.8423 -3.7374 20 6 -2.2746 -5.3982 -1.9781 21 7 -2.5090 -3.9528 -1.8705 22 6 -3.5873 -3.3676 -1.2624 23 1 -3.7234 -2.2976 -1.3173 24 6 -4.5055 -4.1496 -0.5753 25 7 -4.2663 -5.4295 -0.3826 26 14 -6.0809 -3.3856 0.0760 27 1 -7.1069 -3.3755 -0.9975 28 1 -6.5773 -4.1808 1.2277 29 1 -5.8106 -1.9931 0.5156 30 6 -1.4039 -3.2335 -2.5185 31 6 -0.2428 -4.2422 -2.6407 32 1 0.2880 -4.0731 -3.5776 33 1 -0.3633 0.0038 1.0277 34 1 -0.3634 0.8881 -0.5171 35 1 -0.3634 -0.8919 -0.5105 36 1 5.1237 -1.8138 -1.0373 37 1 5.6539 -1.0902 0.5001 38 1 4.6103 -2.5321 0.5081 39 1 0.2597 -2.0503 1.3564 40 1 0.5416 -3.7994 1.1847 41 1 1.6671 -2.8062 2.1414 42 1 2.2318 -5.3900 -1.1427 43 1 1.3703 -4.7878 0.2835 44 1 -0.4657 -6.2207 -0.0067 45 1 0.9591 -7.2243 -0.3387 46 1 -0.8586 -7.5798 -1.9662 47 1 0.6349 -6.9948 -2.7162 48 1 -2.2198 -5.8392 -0.9828 49 1 -3.0806 -5.8625 -2.5463 50 1 -4.9081 -5.9760 0.0972 51 1 -1.0997 -2.3848 -1.9060 52 1 -1.7087 -2.8918 -3.5077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050164302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:42 Heat of formation + Delta-G solvation = 77.268856 kcal Electronic energy + Delta-G solvation = -33481.116965 eV Core-core repulsion = 29483.339476 eV Total energy + Delta-G solvation = -3997.777489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.52568 -40.46925 -37.82389 -35.52230 -34.12145 -33.31772 -32.93596 -32.09930 -30.26267 -29.47522 -27.82682 -27.15674 -26.73979 -25.63389 -24.46690 -23.46909 -22.03389 -21.11735 -20.01099 -19.79759 -18.62826 -17.68706 -17.37689 -16.82362 -16.42326 -15.64579 -15.49101 -15.05389 -14.83800 -14.47166 -14.05494 -13.88464 -13.63557 -13.62009 -13.45859 -13.27462 -13.07970 -12.80297 -12.57558 -12.33382 -12.26168 -12.03656 -11.97706 -11.73372 -11.69057 -11.60067 -11.40035 -11.18761 -10.90689 -10.84241 -10.70894 -10.45648 -10.26040 -10.12480 -10.04548 -9.92239 -9.86776 -9.49236 -9.05960 -8.92317 -8.50245 -8.26647 -7.98499 -6.66199 -5.60657 -2.94659 1.91408 2.83824 2.92154 3.01953 3.45956 3.51509 3.52489 3.54558 4.57774 4.59120 4.72408 4.75942 4.90890 5.04474 5.13950 5.18591 5.20831 5.26671 5.32765 5.41817 5.44383 5.47901 5.56715 5.60004 5.67777 5.71427 5.75730 5.83709 5.89166 5.97855 6.01326 6.05215 6.12558 6.18151 6.27244 6.29495 6.41154 6.42544 6.45607 6.51825 6.61920 6.70308 6.85617 6.90897 7.06339 7.36037 7.40130 7.53917 7.76064 7.81190 7.85449 7.91864 8.38685 8.65879 9.32670 9.94490 10.60058 11.48354 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.004314 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.651031 B = 6489.646094 C = 7904.701868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.124 3.876 3 N -0.306 5.306 4 N -0.483 5.483 5 H 0.434 0.566 6 C 0.085 3.915 7 C -0.092 4.092 8 C -0.210 4.210 9 C -0.029 4.029 10 H 0.092 0.908 11 C -0.149 4.149 12 C 0.510 3.490 13 O -0.518 6.518 14 N -0.581 5.581 15 C 0.105 3.895 16 C -0.128 4.128 17 C -0.098 4.098 18 C -0.114 4.114 19 H 0.068 0.932 20 C 0.175 3.825 21 N -0.601 5.601 22 C -0.217 4.217 23 H 0.075 0.925 24 C -0.009 4.009 25 N -0.922 5.922 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.115 3.885 31 C 0.152 3.848 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.048 0.952 48 H 0.069 0.931 49 H 0.024 0.976 50 H 0.249 0.751 51 H 0.075 0.925 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.667 0.408 2.152 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 N -0.129 5.129 4 N -0.190 5.190 5 H 0.277 0.723 6 C -0.044 4.044 7 C -0.151 4.151 8 C -0.222 4.222 9 C -0.052 4.052 10 H 0.110 0.890 11 C -0.206 4.206 12 C 0.297 3.703 13 O -0.395 6.395 14 N -0.314 5.314 15 C -0.018 4.018 16 C -0.165 4.165 17 C -0.136 4.136 18 C -0.134 4.134 19 H 0.087 0.913 20 C 0.050 3.950 21 N -0.327 5.327 22 C -0.346 4.346 23 H 0.093 0.907 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 C -0.011 4.011 31 C 0.048 3.952 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.042 0.958 50 H 0.059 0.941 51 H 0.092 0.908 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 19.294 2.040 1.880 19.493 hybrid contribution -0.449 -0.352 0.212 0.609 sum 18.845 1.688 2.092 19.036 Atomic orbital electron populations 1.20511 0.86399 1.05194 1.02227 1.22137 0.97024 0.89499 0.95627 1.77304 0.86169 1.22384 1.27072 1.46044 1.07428 1.04480 1.61098 0.72326 1.20736 0.96538 0.85203 1.01910 1.20457 0.92900 0.98392 1.03344 1.19153 0.91075 0.94834 1.17143 1.19550 0.98310 0.92870 0.94443 0.89031 1.21954 1.00104 1.03376 0.95197 1.20520 0.80822 0.82649 0.86288 1.90613 1.53877 1.43222 1.51799 1.46575 1.45417 1.05994 1.33369 1.21251 0.95585 0.89039 0.95922 1.21275 0.99950 0.96271 0.99050 1.20513 0.99030 0.98309 0.95790 1.21146 0.98518 0.93116 1.00630 0.91325 1.20814 0.89460 0.85778 0.98912 1.44343 1.21923 1.01155 1.65319 1.19026 0.98512 0.92028 1.25029 0.90710 1.24725 0.99215 0.95982 1.00565 1.69939 1.35620 1.05084 1.46402 0.86216 0.83851 0.78135 0.78105 1.21781 1.21877 1.20758 1.22012 0.86425 0.95470 0.97171 1.20785 0.90042 0.97068 0.87348 0.92264 0.91225 0.91363 0.88067 0.90245 0.91199 0.89617 0.91149 0.90830 0.91876 0.92896 0.90031 0.90125 0.91308 0.91379 0.93332 0.91344 0.95760 0.94055 0.90756 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 8.45 36.01 0.30 -1.10 16 2 C 0.12 2.01 6.48 -82.41 -0.53 1.48 16 3 N -0.31 -4.86 12.70 33.67 0.43 -4.44 16 4 N -0.48 -5.83 7.36 33.48 0.25 -5.58 16 5 H 0.43 3.64 8.96 -182.61 -1.64 2.01 16 6 C 0.08 0.98 7.21 -82.26 -0.59 0.39 16 7 C -0.09 -0.65 10.07 36.00 0.36 -0.29 16 8 C -0.21 -2.98 4.48 -105.05 -0.47 -3.45 16 9 C -0.03 -0.38 2.02 -92.92 -0.19 -0.57 16 10 H 0.09 0.94 6.01 -51.93 -0.31 0.63 16 11 C -0.15 -1.92 8.63 37.16 0.32 -1.60 16 12 C 0.51 8.44 5.53 -10.99 -0.06 8.38 16 13 O -0.52 -10.18 10.39 5.55 0.06 -10.12 16 14 N -0.58 -9.36 3.07 -169.27 -0.52 -9.88 16 15 C 0.11 1.33 5.32 -5.34 -0.03 1.30 16 16 C -0.13 -1.72 5.88 -27.81 -0.16 -1.88 16 17 C -0.10 -1.45 5.03 -28.70 -0.14 -1.59 16 18 C -0.11 -2.09 2.87 -92.92 -0.27 -2.35 16 19 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 20 C 0.18 4.13 4.83 -4.71 -0.02 4.10 16 21 N -0.60 -15.43 3.39 -172.85 -0.59 -16.02 16 22 C -0.22 -6.11 10.24 -15.06 -0.15 -6.26 16 23 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 24 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 25 N -0.92 -26.57 10.42 55.49 0.58 -25.99 16 26 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 C 0.12 2.59 6.23 -3.14 -0.02 2.57 16 31 C 0.15 2.80 3.28 -68.85 -0.23 2.58 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.90 4.54 -51.93 -0.24 1.67 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.52 7.14 -51.93 -0.37 0.15 16 39 H 0.07 1.04 5.95 -51.93 -0.31 0.73 16 40 H 0.07 0.99 5.82 -51.93 -0.30 0.69 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.92 3.97 -51.93 -0.21 0.72 16 44 H 0.08 1.33 7.06 -51.93 -0.37 0.96 16 45 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.07 1.01 8.06 -51.93 -0.42 0.60 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 1.75 5.27 -51.93 -0.27 1.48 16 49 H 0.02 0.64 7.97 -51.93 -0.41 0.23 16 50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.07 1.75 4.45 -51.93 -0.23 1.52 16 52 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -33.99 380.74 -10.32 -44.31 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -9.25 Total: 3.33 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.98 Total: 1.33 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.15 Total: -61.90 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.06 Total: -10.12 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.99 -10.32 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050164302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.576 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds