Wall clock time and date at job start Wed Apr 1 2020 03:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30838 * 125.89775 * 2 1 4 4 N 1.40080 * 108.20447 * 180.02562 * 3 2 1 5 5 H 0.97005 * 126.04023 * 179.97438 * 4 3 2 6 6 C 1.34941 * 107.92976 * 359.75781 * 4 3 2 7 7 C 1.50704 * 126.13451 * 180.23952 * 6 4 3 8 8 C 1.35313 * 107.74368 * 0.38793 * 6 4 3 9 9 C 1.50704 * 126.04466 * 179.87500 * 8 6 4 10 10 H 1.08998 * 109.46710 * 1.33445 * 9 8 6 11 11 C 1.52999 * 109.46951 * 241.33986 * 9 8 6 12 12 C 1.50696 * 109.47591 * 121.33489 * 9 8 6 13 13 O 1.21288 * 119.99773 * 18.28966 * 12 9 8 14 14 N 1.34773 * 120.00139 * 198.29065 * 12 9 8 15 15 C 1.44503 * 116.65443 * 353.70580 * 14 12 9 16 16 C 1.51616 * 112.72559 * 154.40465 * 15 14 12 17 17 C 1.52181 * 111.87537 * 42.68497 * 16 15 14 18 18 C 1.50772 * 112.98352 * 304.12156 * 17 16 15 19 19 H 1.08996 * 108.56489 * 170.11316 * 18 17 16 20 20 C 1.53903 * 110.59286 * 289.77228 * 18 17 16 21 21 N 1.46817 * 107.50086 * 140.15580 * 20 18 17 22 22 C 1.36939 * 125.37608 * 180.77484 * 21 20 18 23 23 H 1.07996 * 119.99952 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99744 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00467 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99596 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47443 * 59.99769 * 26 24 22 28 28 H 1.48501 * 109.46828 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47008 * 299.99564 * 26 24 22 30 30 C 1.46915 * 109.25075 * 1.03350 * 21 20 18 31 31 C 1.44118 * 116.65157 * 173.68511 * 14 12 9 32 32 H 1.08998 * 109.35334 * 74.45626 * 31 14 12 33 33 H 1.09001 * 109.47283 * 275.77412 * 1 2 3 34 34 H 1.08997 * 109.46969 * 35.77920 * 1 2 3 35 35 H 1.09000 * 109.46914 * 155.77659 * 1 2 3 36 36 H 1.09001 * 109.46818 * 270.18014 * 7 6 4 37 37 H 1.08996 * 109.46672 * 30.17203 * 7 6 4 38 38 H 1.08990 * 109.47362 * 150.17850 * 7 6 4 39 39 H 1.08998 * 109.47064 * 303.50423 * 11 9 8 40 40 H 1.09000 * 109.47865 * 63.50951 * 11 9 8 41 41 H 1.09002 * 109.46706 * 183.51052 * 11 9 8 42 42 H 1.09001 * 108.82923 * 275.24189 * 15 14 12 43 43 H 1.09001 * 108.83139 * 33.56750 * 15 14 12 44 44 H 1.09007 * 108.96132 * 163.03005 * 16 15 14 45 45 H 1.09001 * 108.95996 * 281.69702 * 16 15 14 46 46 H 1.08995 * 108.38263 * 183.61917 * 17 16 15 47 47 H 1.09000 * 109.49530 * 65.40048 * 17 16 15 48 48 H 1.08996 * 109.84584 * 20.66378 * 20 18 17 49 49 H 1.09000 * 109.83853 * 259.63862 * 20 18 17 50 50 H 0.97004 * 120.00246 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.08206 * 101.31144 * 30 21 20 52 52 H 1.08993 * 110.08448 * 222.88477 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6143 -0.7153 0.0045 7 6 4.8351 -1.5989 0.0109 8 6 2.3272 -1.1330 -0.0006 9 6 1.8599 -2.5657 -0.0003 10 1 2.7239 -3.2296 0.0286 11 6 1.0497 -2.8381 -1.2692 12 6 0.9963 -2.8123 1.2098 13 8 0.5078 -1.8765 1.8070 14 7 0.7669 -4.0726 1.6285 15 6 1.2653 -5.1362 0.7867 16 6 1.5315 -6.4157 1.5554 17 6 0.4215 -6.7204 2.5509 18 6 0.1747 -5.5927 3.5208 19 1 -0.7370 -5.8077 4.0782 20 6 1.3485 -5.4605 4.5073 21 7 1.5956 -4.0275 4.7100 22 6 2.5724 -3.4968 5.5097 23 1 3.2379 -4.1497 6.0548 24 6 2.7071 -2.1196 5.6196 25 7 1.8964 -1.3239 4.9549 26 14 4.0391 -1.3956 6.7110 27 1 5.3703 -1.8494 6.2346 28 1 3.9721 0.0869 6.6565 29 1 3.8331 -1.8487 8.1101 30 6 0.6256 -3.2528 3.9243 31 6 0.0500 -4.2211 2.8699 32 1 -1.0035 -3.9929 2.7081 33 1 -0.3634 0.1034 1.0224 34 1 -0.3633 0.8337 -0.6008 35 1 -0.3633 -0.9372 -0.4217 36 1 5.1338 -1.8131 -1.0153 37 1 5.6489 -1.0902 0.5275 38 1 4.6054 -2.5322 0.5248 39 1 0.2210 -2.1327 -1.3295 40 1 1.6914 -2.7205 -2.1424 41 1 0.6594 -3.8555 -1.2396 42 1 0.5319 -5.3405 0.0066 43 1 2.1928 -4.8082 0.3175 44 1 1.6078 -7.2433 0.8501 45 1 2.4772 -6.3183 2.0885 46 1 0.7001 -7.6108 3.1144 47 1 -0.5035 -6.9265 2.0125 48 1 2.2373 -5.9340 4.0904 49 1 1.0886 -5.9290 5.4565 50 1 1.9907 -0.3615 5.0315 51 1 -0.1718 -2.8861 4.5706 52 1 1.1240 -2.4173 3.4329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050164303.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:45 Heat of formation + Delta-G solvation = 55.606104 kcal Electronic energy + Delta-G solvation = -33879.191880 eV Core-core repulsion = 29880.475024 eV Total energy + Delta-G solvation = -3998.716856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50797 -41.60884 -39.09360 -36.93919 -35.28689 -34.56303 -34.07481 -33.59726 -31.55739 -30.91393 -28.94942 -28.68927 -27.62525 -27.26465 -25.84229 -24.70999 -23.34466 -22.61646 -21.14998 -21.05379 -19.76685 -19.22289 -18.82031 -18.15708 -17.50429 -17.08585 -16.92096 -16.30356 -15.96402 -15.67919 -15.58980 -15.15485 -14.98540 -14.86103 -14.51868 -14.37415 -14.15005 -13.84767 -13.68909 -13.68155 -13.60951 -13.34712 -13.26764 -13.10052 -12.98998 -12.91854 -12.80570 -12.61904 -12.38398 -12.23601 -12.20696 -12.10262 -11.77413 -11.67105 -11.43289 -11.32395 -11.26593 -11.15578 -10.72756 -10.08227 -10.04454 -9.29964 -9.07742 -8.78234 -7.68523 -5.14792 0.97516 1.37157 1.41299 1.48122 1.73561 2.05112 2.08466 2.42767 2.48012 3.36736 3.64297 3.74537 3.76641 3.81923 3.88146 3.93375 4.10239 4.16348 4.17790 4.19035 4.30491 4.41609 4.48097 4.50790 4.65612 4.68642 4.73128 4.76763 4.80691 4.84326 4.94326 4.96962 4.98862 5.02394 5.05978 5.08446 5.17090 5.21025 5.23421 5.27550 5.30322 5.43879 5.45774 5.50049 5.55632 5.56201 5.84662 5.96832 6.13060 6.52272 6.57028 6.78474 6.83425 7.14124 7.64120 7.88234 8.49127 9.27541 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008324 B = 0.006205 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.015728 B = 4511.176328 C = 6522.105051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.102 3.898 3 N -0.345 5.345 4 N -0.477 5.477 5 H 0.445 0.555 6 C 0.092 3.908 7 C -0.090 4.090 8 C -0.237 4.237 9 C -0.019 4.019 10 H 0.110 0.890 11 C -0.137 4.137 12 C 0.492 3.508 13 O -0.542 6.542 14 N -0.589 5.589 15 C 0.103 3.897 16 C -0.126 4.126 17 C -0.097 4.097 18 C -0.090 4.090 19 H 0.079 0.921 20 C 0.136 3.864 21 N -0.621 5.621 22 C -0.242 4.242 23 H 0.079 0.921 24 C -0.064 4.064 25 N -0.927 5.927 26 Si 0.969 3.031 27 H -0.272 1.272 28 H -0.303 1.303 29 H -0.278 1.278 30 C 0.139 3.861 31 C 0.148 3.852 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.032 0.968 49 H 0.014 0.986 50 H 0.235 0.765 51 H -0.042 1.042 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -10.813 -18.429 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 N -0.169 5.169 4 N -0.186 5.186 5 H 0.291 0.709 6 C -0.038 4.038 7 C -0.148 4.148 8 C -0.248 4.248 9 C -0.042 4.042 10 H 0.128 0.872 11 C -0.194 4.194 12 C 0.280 3.720 13 O -0.418 6.418 14 N -0.322 5.322 15 C -0.019 4.019 16 C -0.163 4.163 17 C -0.135 4.135 18 C -0.110 4.110 19 H 0.097 0.903 20 C 0.011 3.989 21 N -0.347 5.347 22 C -0.372 4.372 23 H 0.096 0.904 24 C -0.258 4.258 25 N -0.575 5.575 26 Si 0.798 3.202 27 H -0.198 1.198 28 H -0.230 1.230 29 H -0.204 1.204 30 C 0.014 3.986 31 C 0.043 3.957 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.133 0.867 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.050 0.950 49 H 0.032 0.968 50 H 0.045 0.955 51 H -0.024 1.024 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.772 -8.932 -18.032 20.201 hybrid contribution 0.782 0.700 1.811 2.093 sum 2.553 -8.232 -16.220 18.368 Atomic orbital electron populations 1.20212 0.86594 1.02910 1.01967 1.22329 0.97468 0.90377 0.96240 1.77126 0.87698 1.23403 1.28664 1.46032 1.06947 1.05159 1.60478 0.70931 1.21389 0.97762 0.85264 0.99352 1.20596 0.91515 0.97590 1.05076 1.19418 0.91561 0.95504 1.18333 1.19588 0.98495 0.92263 0.93810 0.87200 1.21900 1.00011 1.02930 0.94578 1.21288 0.81716 0.82609 0.86346 1.90717 1.50895 1.43632 1.56570 1.46674 1.57178 1.06756 1.21610 1.21284 1.00396 0.87442 0.92757 1.21319 0.98519 0.97568 0.98920 1.20707 1.00132 0.96137 0.96520 1.21276 0.98532 0.94240 0.96905 0.90256 1.21500 0.96098 0.85449 0.95859 1.44616 1.35570 1.01303 1.53256 1.19287 1.07789 0.90439 1.19651 0.90352 1.25626 1.01498 0.96621 1.02018 1.70250 1.40054 1.01645 1.45566 0.85300 0.79550 0.76417 0.78978 1.19759 1.23020 1.20366 1.22176 0.90479 0.96132 0.89850 1.20705 0.93966 0.96425 0.84638 0.93162 0.92550 0.91027 0.89442 0.86774 0.90234 0.90077 0.92590 0.89666 0.89705 0.89608 0.89450 0.86721 0.93253 0.90125 0.89849 0.95021 0.96814 0.95506 1.02420 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 8.55 71.24 0.61 -1.41 16 2 C 0.10 3.83 6.54 43.10 0.28 4.11 16 3 N -0.34 -13.23 12.70 -47.38 -0.60 -13.83 16 4 N -0.48 -14.92 7.36 -48.00 -0.35 -15.28 16 5 H 0.45 10.70 8.96 -213.33 -1.91 8.79 16 6 C 0.09 2.75 7.21 41.41 0.30 3.05 16 7 C -0.09 -1.83 10.07 71.24 0.72 -1.11 16 8 C -0.24 -7.94 4.58 -20.14 -0.09 -8.03 16 9 C -0.02 -0.54 2.01 -12.29 -0.02 -0.56 16 10 H 0.11 2.60 5.00 -2.39 -0.01 2.59 16 11 C -0.14 -2.68 8.90 71.98 0.64 -2.04 16 12 C 0.49 18.42 5.80 87.66 0.51 18.92 16 13 O -0.54 -26.05 10.05 -3.05 -0.03 -26.08 16 14 N -0.59 -19.60 3.08 -809.63 -2.49 -22.10 16 15 C 0.10 2.18 4.97 86.30 0.43 2.61 16 16 C -0.13 -2.42 5.85 29.87 0.17 -2.24 16 17 C -0.10 -2.11 5.17 29.60 0.15 -1.96 16 18 C -0.09 -2.99 2.96 -11.43 -0.03 -3.03 16 19 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 20 C 0.14 5.70 6.73 86.62 0.58 6.28 16 21 N -0.62 -33.81 3.39 -695.87 -2.36 -36.17 16 22 C -0.24 -14.34 10.25 84.03 0.86 -13.47 16 23 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 24 C -0.06 -3.88 5.48 84.86 0.47 -3.41 16 25 N -0.93 -60.82 10.18 21.65 0.22 -60.60 16 26 Si 0.97 48.80 29.55 68.60 2.03 50.83 16 27 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 28 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 29 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 30 C 0.14 7.58 4.63 86.74 0.40 7.98 16 31 C 0.15 5.93 3.23 45.65 0.15 6.08 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.34 7.23 -2.39 -0.02 2.33 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.66 4.87 -2.39 -0.01 2.65 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.78 7.12 -2.39 -0.02 1.76 16 39 H 0.06 1.24 5.22 -2.39 -0.01 1.22 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.26 5.97 -2.39 -0.01 1.24 16 42 H 0.09 1.31 7.00 -2.39 -0.02 1.29 16 43 H 0.09 1.60 5.57 -2.39 -0.01 1.59 16 44 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.05 1.17 7.06 -2.39 -0.02 1.16 16 46 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.03 1.27 6.65 -2.39 -0.02 1.25 16 49 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 51 H -0.04 -2.68 8.14 -2.39 -0.02 -2.70 16 52 H 0.12 7.24 3.05 -2.40 -0.01 7.23 16 Total: -1.00 -87.72 379.92 1.58 -86.14 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.95 Total: 25.33 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.12 Total: 11.76 kcal Atomic # 7 Polarization: -142.39 SS G_CDS: -5.59 Total: -147.97 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.03 Total: -26.08 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -87.72 1.58 -86.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050164303.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.747 kcal (2) G-P(sol) polarization free energy of solvation -87.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds