Wall clock time and date at job start Wed Apr 1 2020 03:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30833 * 125.89795 * 2 1 4 4 N 1.40085 * 108.20689 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.04537 * 179.97438 * 4 3 2 6 6 C 1.34954 * 107.92288 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.12640 * 179.97438 * 6 4 3 8 8 C 1.35311 * 107.74504 * 0.02562 * 6 4 3 9 9 C 1.50707 * 126.03776 * 180.02562 * 8 6 4 10 10 H 1.08994 * 109.47228 * 359.97438 * 9 8 6 11 11 C 1.53008 * 109.46784 * 239.99387 * 9 8 6 12 12 C 1.50698 * 109.47122 * 119.99519 * 9 8 6 13 13 O 1.21281 * 120.00400 * 356.76989 * 12 9 8 14 14 N 1.34779 * 119.99881 * 176.76344 * 12 9 8 15 15 C 1.47168 * 136.00217 * 184.58828 * 14 12 9 16 16 C 1.52639 * 87.97030 * 206.72358 * 15 14 12 17 17 C 1.47158 * 135.99821 * 4.95867 * 14 12 9 18 18 C 1.52560 * 113.89977 * 88.17110 * 16 15 14 19 19 C 1.53350 * 109.13000 * 190.30389 * 18 16 15 20 20 N 1.46882 * 108.75465 * 307.75987 * 19 18 16 21 21 C 1.36939 * 120.46459 * 235.60848 * 20 19 18 22 22 H 1.08000 * 119.99734 * 32.58038 * 21 20 19 23 23 C 1.38813 * 120.00166 * 212.58988 * 21 20 19 24 24 N 1.31617 * 119.99677 * 10.52713 * 23 21 20 25 25 Si 1.86797 * 120.00009 * 190.53343 * 23 21 20 26 26 H 1.48494 * 109.47166 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46991 * 119.99576 * 25 23 21 28 28 H 1.48504 * 109.46722 * 239.99516 * 25 23 21 29 29 C 1.46889 * 119.07386 * 55.62261 * 20 19 18 30 30 C 1.52554 * 114.26043 * 220.76309 * 16 15 14 31 31 H 1.08997 * 109.47635 * 90.01863 * 1 2 3 32 32 H 1.09006 * 109.47165 * 210.01981 * 1 2 3 33 33 H 1.09004 * 109.47357 * 330.02014 * 1 2 3 34 34 H 1.09005 * 109.47146 * 89.97826 * 7 6 4 35 35 H 1.09005 * 109.47171 * 209.98030 * 7 6 4 36 36 H 1.08999 * 109.47171 * 329.97825 * 7 6 4 37 37 H 1.08994 * 109.46669 * 184.57620 * 11 9 8 38 38 H 1.08994 * 109.47090 * 304.57830 * 11 9 8 39 39 H 1.09003 * 109.46722 * 64.57615 * 11 9 8 40 40 H 1.09008 * 113.48196 * 321.41725 * 15 14 12 41 41 H 1.08998 * 113.48757 * 91.91765 * 15 14 12 42 42 H 1.08997 * 113.49047 * 268.07869 * 17 14 12 43 43 H 1.08997 * 113.49167 * 38.59204 * 17 14 12 44 44 H 1.09004 * 109.52527 * 310.19950 * 18 16 15 45 45 H 1.08999 * 109.52250 * 70.40923 * 18 16 15 46 46 H 1.09004 * 109.58990 * 187.97431 * 19 18 16 47 47 H 1.09003 * 109.59141 * 67.54335 * 19 18 16 48 48 H 0.96997 * 119.99967 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.59226 * 184.59077 * 29 20 19 50 50 H 1.09001 * 109.59192 * 64.14646 * 29 20 19 51 51 H 1.09008 * 109.52756 * 289.74983 * 30 16 15 52 52 H 1.09000 * 109.53028 * 49.88712 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5989 -0.0030 8 6 2.3271 -1.1330 -0.0021 9 6 1.8599 -2.5658 -0.0026 10 1 2.7242 -3.2298 -0.0030 11 6 1.0163 -2.8266 -1.2523 12 6 1.0284 -2.8235 1.2275 13 8 0.8828 -1.9491 2.0552 14 7 0.4465 -4.0257 1.4078 15 6 -0.4724 -4.6202 2.3917 16 6 0.1310 -5.9806 2.0525 17 6 0.4563 -5.3218 0.7109 18 6 1.3589 -6.3370 2.8847 19 6 2.0239 -7.5846 2.2905 20 7 1.0093 -8.6368 2.1456 21 6 1.1943 -9.8641 2.7241 22 1 1.7330 -9.9457 3.6566 23 6 0.6898 -11.0032 2.1120 24 7 0.2190 -10.9369 0.8847 25 14 0.6788 -12.6299 3.0301 26 1 1.2594 -12.4384 4.3834 27 1 -0.7179 -13.1185 3.1548 28 1 1.4868 -13.6261 2.2816 29 6 -0.2064 -8.3543 1.3711 30 6 -0.8877 -7.1124 1.9588 31 1 -0.3634 -0.0003 -1.0276 32 1 -0.3634 -0.8899 0.5142 33 1 -0.3634 0.8902 0.5135 34 1 5.1302 -1.8124 1.0244 35 1 4.6070 -2.5328 -0.5170 36 1 5.6506 -1.0908 -0.5173 37 1 0.6113 -3.8378 -1.2126 38 1 0.1974 -2.1086 -1.2942 39 1 1.6395 -2.7193 -2.1401 40 1 -0.2764 -4.3031 3.4161 41 1 -1.5229 -4.5296 2.1152 42 1 -0.3389 -5.4241 -0.0275 43 1 1.4353 -5.5964 0.3181 44 1 2.0638 -5.5057 2.8685 45 1 1.0564 -6.5396 3.9120 46 1 2.8153 -7.9291 2.9563 47 1 2.4439 -7.3448 1.3137 48 1 -0.1340 -11.7328 0.4570 49 1 -0.8841 -9.2058 1.4311 50 1 0.0584 -8.1678 0.3303 51 1 -1.2691 -7.3425 2.9537 52 1 -1.7121 -6.8082 1.3139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050701295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:02 Heat of formation + Delta-G solvation = 87.387167 kcal Electronic energy + Delta-G solvation = -31766.659252 eV Core-core repulsion = 27769.320526 eV Total energy + Delta-G solvation = -3997.338726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.64463 -40.68071 -38.35876 -35.86694 -34.38906 -33.48009 -32.45865 -30.89135 -30.31670 -29.63052 -28.14571 -27.23661 -26.85506 -25.93578 -24.55004 -23.62242 -22.36309 -20.99006 -20.30330 -19.84952 -18.75856 -18.07690 -17.39095 -16.75359 -16.43857 -15.63185 -15.51178 -15.10122 -14.89623 -14.71954 -13.97019 -13.82875 -13.80412 -13.56013 -13.51492 -13.39955 -13.08849 -13.00537 -12.76237 -12.68737 -12.55903 -12.48243 -12.23901 -12.08700 -11.84922 -11.64743 -11.56750 -11.40291 -11.39198 -11.02626 -10.78571 -10.50057 -10.46596 -10.28978 -10.14807 -9.80819 -9.70801 -9.61934 -9.30219 -9.30065 -8.51142 -8.49410 -8.44986 -6.61902 -5.81455 -3.30347 1.73020 2.55512 2.71905 2.78763 3.12362 3.34439 3.42768 3.44462 4.43000 4.46157 4.48855 4.52492 4.65547 4.81983 4.95173 5.01982 5.11836 5.15623 5.24125 5.29439 5.30924 5.38835 5.50905 5.54739 5.55829 5.58262 5.60263 5.63770 5.67084 5.72000 5.82268 5.86623 5.93700 6.00552 6.01169 6.05754 6.08911 6.14557 6.26309 6.48297 6.57287 6.59745 6.62807 6.66644 6.81934 6.93836 7.16732 7.33265 7.61617 7.65832 7.77512 7.93889 8.34359 8.46809 9.20697 9.81663 10.39535 11.26117 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002427 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.771780 B =11532.223779 C =11967.836724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.112 3.888 3 N -0.303 5.303 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.093 3.907 7 C -0.096 4.096 8 C -0.211 4.211 9 C -0.024 4.024 10 H 0.099 0.901 11 C -0.145 4.145 12 C 0.545 3.455 13 O -0.537 6.537 14 N -0.642 5.642 15 C 0.107 3.893 16 C -0.075 4.075 17 C 0.108 3.892 18 C -0.106 4.106 19 C 0.148 3.852 20 N -0.591 5.591 21 C -0.252 4.252 22 H 0.063 0.937 23 C 0.005 3.995 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.290 1.290 29 C 0.173 3.827 30 C -0.126 4.126 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.090 0.910 50 H 0.018 0.982 51 H 0.061 0.939 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 17.801 -5.066 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 N -0.126 5.126 4 N -0.187 5.187 5 H 0.279 0.721 6 C -0.035 4.035 7 C -0.154 4.154 8 C -0.223 4.223 9 C -0.047 4.047 10 H 0.117 0.883 11 C -0.202 4.202 12 C 0.334 3.666 13 O -0.414 6.414 14 N -0.377 5.377 15 C -0.016 4.016 16 C -0.076 4.076 17 C -0.015 4.015 18 C -0.146 4.146 19 C 0.022 3.978 20 N -0.313 5.313 21 C -0.382 4.382 22 H 0.081 0.919 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.732 3.268 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.217 1.217 29 C 0.047 3.953 30 C -0.165 4.165 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.035 0.965 48 H 0.063 0.937 49 H 0.108 0.892 50 H 0.036 0.964 51 H 0.080 0.920 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.524 19.623 -4.755 20.496 hybrid contribution 0.431 -1.371 0.390 1.489 sum 3.955 18.252 -4.365 19.179 Atomic orbital electron populations 1.20293 0.87080 1.03992 1.02104 1.22010 0.96747 0.89829 0.96878 1.77264 0.86350 1.22272 1.26697 1.46044 1.07330 1.04598 1.60733 0.72059 1.20799 0.96681 0.85112 1.00941 1.20510 0.92796 0.98429 1.03707 1.19068 0.91224 0.94575 1.17437 1.19427 0.98607 0.93038 0.93609 0.88326 1.21864 0.99993 1.02423 0.95919 1.20100 0.79681 0.79503 0.87270 1.90690 1.62207 1.43312 1.45233 1.49675 1.46949 1.10606 1.30469 1.23091 0.93803 0.90723 0.93965 1.21638 0.97650 0.93253 0.95091 1.23148 1.02273 0.79462 0.96569 1.21716 0.95048 0.98856 0.98938 1.20890 0.91653 0.88233 0.97052 1.43976 1.16066 1.09945 1.61334 1.19211 1.34024 0.83170 1.01770 0.91928 1.25170 1.01282 0.97733 0.95163 1.69964 1.45081 1.28209 1.11572 0.86223 0.77367 0.83952 0.79233 1.20264 1.21578 1.21682 1.20784 0.88727 0.93820 0.91936 1.22094 0.96065 0.96711 1.01672 0.90930 0.89922 0.91105 0.89930 0.89386 0.90980 0.91493 0.91886 0.91585 0.90994 0.90189 0.89775 0.90372 0.93048 0.91829 0.92747 0.96490 0.93659 0.89204 0.96362 0.92020 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 8.57 36.00 0.31 -0.59 16 2 C 0.11 1.52 6.54 -82.41 -0.54 0.98 16 3 N -0.30 -4.17 12.70 33.67 0.43 -3.74 16 4 N -0.48 -5.14 7.36 33.48 0.25 -4.89 16 5 H 0.44 3.15 8.96 -182.61 -1.64 1.51 16 6 C 0.09 1.00 7.21 -82.26 -0.59 0.40 16 7 C -0.10 -0.67 10.07 36.00 0.36 -0.31 16 8 C -0.21 -2.64 4.34 -105.05 -0.46 -3.10 16 9 C -0.02 -0.28 2.78 -92.92 -0.26 -0.54 16 10 H 0.10 1.02 6.79 -51.93 -0.35 0.67 16 11 C -0.14 -1.41 9.02 37.16 0.34 -1.07 16 12 C 0.54 7.84 6.36 -10.99 -0.07 7.77 16 13 O -0.54 -9.57 14.89 5.56 0.08 -9.49 16 14 N -0.64 -8.70 3.36 -185.32 -0.62 -9.32 16 15 C 0.11 1.45 7.76 -8.37 -0.06 1.39 16 16 C -0.08 -1.11 0.83 -155.17 -0.13 -1.24 16 17 C 0.11 1.40 5.66 -8.21 -0.05 1.35 16 18 C -0.11 -1.73 5.25 -26.78 -0.14 -1.87 16 19 C 0.15 2.87 6.41 -3.65 -0.02 2.84 16 20 N -0.59 -13.71 2.95 -172.18 -0.51 -14.22 16 21 C -0.25 -6.57 9.55 -15.06 -0.14 -6.71 16 22 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 23 C 0.01 0.14 5.04 -17.43 -0.09 0.05 16 24 N -0.90 -24.94 11.08 55.49 0.61 -24.32 16 25 Si 0.90 20.94 29.57 -169.99 -5.03 15.92 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.17 3.72 5.21 -3.65 -0.02 3.70 16 30 C -0.13 -2.08 5.31 -26.77 -0.14 -2.23 16 31 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 32 H 0.08 1.07 5.46 -51.93 -0.28 0.79 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.56 7.14 -51.93 -0.37 0.19 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.63 5.98 -51.93 -0.31 0.32 16 38 H 0.06 0.62 6.03 -51.93 -0.31 0.30 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.03 8.10 -51.92 -0.42 0.61 16 41 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.08 0.99 7.81 -51.93 -0.41 0.58 16 43 H 0.08 1.01 7.53 -51.93 -0.39 0.62 16 44 H 0.05 0.79 7.95 -51.93 -0.41 0.38 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 47 H 0.02 0.33 7.60 -51.93 -0.39 -0.07 16 48 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 49 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 52 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -32.44 399.63 -10.24 -42.68 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -9.77 Total: 0.54 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.71 Total: 0.83 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.16 Total: -56.49 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.44 -10.24 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050701295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.064 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds