Wall clock time and date at job start Wed Apr 1 2020 03:53:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30833 * 125.89795 * 2 1
4 4 N 1.40085 * 108.20689 * 180.02562 * 3 2 1
5 5 H 0.96999 * 126.04537 * 179.97438 * 4 3 2
6 6 C 1.34954 * 107.92288 * 0.02562 * 4 3 2
7 7 C 1.50698 * 126.12640 * 179.97438 * 6 4 3
8 8 C 1.35311 * 107.74504 * 0.02562 * 6 4 3
9 9 C 1.50707 * 126.03776 * 180.02562 * 8 6 4
10 10 H 1.08994 * 109.47228 * 359.97438 * 9 8 6
11 11 C 1.53008 * 109.46784 * 239.99387 * 9 8 6
12 12 C 1.50698 * 109.47122 * 119.99519 * 9 8 6
13 13 O 1.21281 * 120.00400 * 356.76989 * 12 9 8
14 14 N 1.34779 * 119.99881 * 176.76344 * 12 9 8
15 15 C 1.47168 * 136.00217 * 184.58828 * 14 12 9
16 16 C 1.52639 * 87.97030 * 206.72358 * 15 14 12
17 17 C 1.47158 * 135.99821 * 4.95867 * 14 12 9
18 18 C 1.52560 * 113.89977 * 88.17110 * 16 15 14
19 19 C 1.53350 * 109.13000 * 190.30389 * 18 16 15
20 20 N 1.46882 * 108.75465 * 307.75987 * 19 18 16
21 21 C 1.36939 * 120.46459 * 235.60848 * 20 19 18
22 22 H 1.08000 * 119.99734 * 32.58038 * 21 20 19
23 23 C 1.38813 * 120.00166 * 212.58988 * 21 20 19
24 24 N 1.31617 * 119.99677 * 10.52713 * 23 21 20
25 25 Si 1.86797 * 120.00009 * 190.53343 * 23 21 20
26 26 H 1.48494 * 109.47166 * 359.97438 * 25 23 21
27 27 H 1.48497 * 109.46991 * 119.99576 * 25 23 21
28 28 H 1.48504 * 109.46722 * 239.99516 * 25 23 21
29 29 C 1.46889 * 119.07386 * 55.62261 * 20 19 18
30 30 C 1.52554 * 114.26043 * 220.76309 * 16 15 14
31 31 H 1.08997 * 109.47635 * 90.01863 * 1 2 3
32 32 H 1.09006 * 109.47165 * 210.01981 * 1 2 3
33 33 H 1.09004 * 109.47357 * 330.02014 * 1 2 3
34 34 H 1.09005 * 109.47146 * 89.97826 * 7 6 4
35 35 H 1.09005 * 109.47171 * 209.98030 * 7 6 4
36 36 H 1.08999 * 109.47171 * 329.97825 * 7 6 4
37 37 H 1.08994 * 109.46669 * 184.57620 * 11 9 8
38 38 H 1.08994 * 109.47090 * 304.57830 * 11 9 8
39 39 H 1.09003 * 109.46722 * 64.57615 * 11 9 8
40 40 H 1.09008 * 113.48196 * 321.41725 * 15 14 12
41 41 H 1.08998 * 113.48757 * 91.91765 * 15 14 12
42 42 H 1.08997 * 113.49047 * 268.07869 * 17 14 12
43 43 H 1.08997 * 113.49167 * 38.59204 * 17 14 12
44 44 H 1.09004 * 109.52527 * 310.19950 * 18 16 15
45 45 H 1.08999 * 109.52250 * 70.40923 * 18 16 15
46 46 H 1.09004 * 109.58990 * 187.97431 * 19 18 16
47 47 H 1.09003 * 109.59141 * 67.54335 * 19 18 16
48 48 H 0.96997 * 119.99967 * 180.02562 * 24 23 21
49 49 H 1.09001 * 109.59226 * 184.59077 * 29 20 19
50 50 H 1.09001 * 109.59192 * 64.14646 * 29 20 19
51 51 H 1.09008 * 109.52756 * 289.74983 * 30 16 15
52 52 H 1.09000 * 109.53028 * 49.88712 * 30 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2741 1.0598 0.0000
4 7 3.6087 0.6341 -0.0006
5 1 4.3908 1.2079 -0.0011
6 6 3.6142 -0.7154 -0.0015
7 6 4.8350 -1.5989 -0.0030
8 6 2.3271 -1.1330 -0.0021
9 6 1.8599 -2.5658 -0.0026
10 1 2.7242 -3.2298 -0.0030
11 6 1.0163 -2.8266 -1.2523
12 6 1.0284 -2.8235 1.2275
13 8 0.8828 -1.9491 2.0552
14 7 0.4465 -4.0257 1.4078
15 6 -0.4724 -4.6202 2.3917
16 6 0.1310 -5.9806 2.0525
17 6 0.4563 -5.3218 0.7109
18 6 1.3589 -6.3370 2.8847
19 6 2.0239 -7.5846 2.2905
20 7 1.0093 -8.6368 2.1456
21 6 1.1943 -9.8641 2.7241
22 1 1.7330 -9.9457 3.6566
23 6 0.6898 -11.0032 2.1120
24 7 0.2190 -10.9369 0.8847
25 14 0.6788 -12.6299 3.0301
26 1 1.2594 -12.4384 4.3834
27 1 -0.7179 -13.1185 3.1548
28 1 1.4868 -13.6261 2.2816
29 6 -0.2064 -8.3543 1.3711
30 6 -0.8877 -7.1124 1.9588
31 1 -0.3634 -0.0003 -1.0276
32 1 -0.3634 -0.8899 0.5142
33 1 -0.3634 0.8902 0.5135
34 1 5.1302 -1.8124 1.0244
35 1 4.6070 -2.5328 -0.5170
36 1 5.6506 -1.0908 -0.5173
37 1 0.6113 -3.8378 -1.2126
38 1 0.1974 -2.1086 -1.2942
39 1 1.6395 -2.7193 -2.1401
40 1 -0.2764 -4.3031 3.4161
41 1 -1.5229 -4.5296 2.1152
42 1 -0.3389 -5.4241 -0.0275
43 1 1.4353 -5.5964 0.3181
44 1 2.0638 -5.5057 2.8685
45 1 1.0564 -6.5396 3.9120
46 1 2.8153 -7.9291 2.9563
47 1 2.4439 -7.3448 1.3137
48 1 -0.1340 -11.7328 0.4570
49 1 -0.8841 -9.2058 1.4311
50 1 0.0584 -8.1678 0.3303
51 1 -1.2691 -7.3425 2.9537
52 1 -1.7121 -6.8082 1.3139
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001050701295.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:53:01
Heat of formation + Delta-G solvation = 67.861847 kcal
Electronic energy + Delta-G solvation = -31767.505934 eV
Core-core repulsion = 27769.320526 eV
Total energy + Delta-G solvation = -3998.185407 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.53305 -41.81491 -39.54644 -37.44779 -35.31692 -34.32434 -34.13029 -32.23057
-31.51185 -30.99692 -29.02229 -28.54681 -27.66844 -27.00996 -26.08314 -24.72231
-23.86796 -22.48774 -21.16821 -20.90857 -19.84079 -19.42465 -18.32394 -18.28321
-17.56583 -16.81967 -16.68952 -16.57341 -15.97346 -15.75979 -15.52653 -15.23604
-14.84184 -14.80281 -14.62943 -14.45839 -14.13703 -13.99880 -13.91954 -13.68594
-13.52350 -13.33721 -13.26029 -13.12119 -12.98586 -12.94360 -12.84434 -12.74002
-12.55475 -12.45873 -12.25998 -12.18836 -11.95013 -11.76407 -11.39089 -11.25277
-11.16948 -11.05341 -10.59211 -10.41817 -10.17642 -9.58242 -9.34342 -8.50138
-7.79812 -5.30603 0.89388 1.48966 1.52073 1.60483 1.60831 1.71864
1.97287 2.10505 2.55450 3.31227 3.44703 3.58160 3.65702 3.74462
3.79372 3.90688 4.09565 4.16832 4.21501 4.24265 4.32696 4.39744
4.53022 4.54682 4.59915 4.67041 4.70072 4.71656 4.72161 4.77319
4.78287 4.85589 4.90143 4.92500 5.01685 5.04574 5.10780 5.11727
5.16313 5.20621 5.22674 5.28121 5.33220 5.43441 5.45611 5.64149
5.71364 5.73785 5.92276 6.45888 6.50967 6.74497 6.86147 7.25736
7.26311 7.96244 8.46715 9.24475
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.022744 B = 0.002427 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1230.771780 B =11532.223779 C =11967.836724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.094 3.906
3 N -0.337 5.337
4 N -0.473 5.473
5 H 0.449 0.551
6 C 0.100 3.900
7 C -0.095 4.095
8 C -0.237 4.237
9 C -0.017 4.017
10 H 0.114 0.886
11 C -0.140 4.140
12 C 0.543 3.457
13 O -0.576 6.576
14 N -0.639 5.639
15 C 0.112 3.888
16 C -0.078 4.078
17 C 0.117 3.883
18 C -0.093 4.093
19 C 0.148 3.852
20 N -0.609 5.609
21 C -0.259 4.259
22 H 0.058 0.942
23 C -0.044 4.044
24 N -0.930 5.930
25 Si 0.960 3.040
26 H -0.271 1.271
27 H -0.291 1.291
28 H -0.293 1.293
29 C 0.179 3.821
30 C -0.110 4.110
31 H 0.091 0.909
32 H 0.070 0.930
33 H 0.066 0.934
34 H 0.085 0.915
35 H 0.098 0.902
36 H 0.096 0.904
37 H 0.071 0.929
38 H 0.058 0.942
39 H 0.079 0.921
40 H 0.063 0.937
41 H 0.100 0.900
42 H 0.104 0.896
43 H 0.082 0.918
44 H 0.064 0.936
45 H 0.053 0.947
46 H 0.046 0.954
47 H 0.024 0.976
48 H 0.249 0.751
49 H 0.052 0.948
50 H 0.009 0.991
51 H 0.051 0.949
52 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.236 18.457 -5.733 19.786
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.072 4.072
3 N -0.161 5.161
4 N -0.182 5.182
5 H 0.295 0.705
6 C -0.030 4.030
7 C -0.153 4.153
8 C -0.249 4.249
9 C -0.040 4.040
10 H 0.132 0.868
11 C -0.198 4.198
12 C 0.335 3.665
13 O -0.456 6.456
14 N -0.374 5.374
15 C -0.011 4.011
16 C -0.079 4.079
17 C -0.006 4.006
18 C -0.132 4.132
19 C 0.022 3.978
20 N -0.333 5.333
21 C -0.390 4.390
22 H 0.075 0.925
23 C -0.239 4.239
24 N -0.576 5.576
25 Si 0.789 3.211
26 H -0.196 1.196
27 H -0.217 1.217
28 H -0.220 1.220
29 C 0.054 3.946
30 C -0.150 4.150
31 H 0.110 0.890
32 H 0.089 0.911
33 H 0.085 0.915
34 H 0.104 0.896
35 H 0.116 0.884
36 H 0.115 0.885
37 H 0.090 0.910
38 H 0.077 0.923
39 H 0.098 0.902
40 H 0.082 0.918
41 H 0.118 0.882
42 H 0.122 0.878
43 H 0.101 0.899
44 H 0.082 0.918
45 H 0.071 0.929
46 H 0.065 0.935
47 H 0.042 0.958
48 H 0.059 0.941
49 H 0.071 0.929
50 H 0.027 0.973
51 H 0.070 0.930
52 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 4.249 20.300 -5.418 21.435
hybrid contribution 0.279 -1.543 0.628 1.689
sum 4.527 18.756 -4.790 19.881
Atomic orbital electron populations
1.20269 0.86659 1.03089 1.03063 1.22311 0.97441 0.90380 0.97035
1.77181 0.87707 1.23088 1.28143 1.46094 1.07008 1.05120 1.60001
0.70490 1.21355 0.97485 0.85252 0.98870 1.20655 0.91922 0.98356
1.04389 1.19294 0.91894 0.94779 1.18897 1.19434 0.98804 0.92922
0.92796 0.86840 1.21852 0.99886 1.02496 0.95526 1.20622 0.79375
0.78957 0.87590 1.90675 1.63626 1.44505 1.46790 1.49669 1.46671
1.10662 1.30366 1.23056 0.94869 0.89376 0.93804 1.21503 0.96676
0.93206 0.96551 1.23163 1.03277 0.78380 0.95741 1.21517 0.95777
0.97551 0.98359 1.20972 0.91012 0.88387 0.97389 1.44226 1.17677
1.09974 1.61383 1.19448 1.33273 0.84620 1.01668 0.92457 1.25793
1.01753 1.00453 0.95942 1.70100 1.46200 1.28549 1.12728 0.85316
0.76954 0.80460 0.78362 1.19558 1.21749 1.21987 1.20604 0.87818
0.94524 0.91668 1.21862 0.96827 0.95055 1.01224 0.89008 0.91139
0.91544 0.89602 0.88374 0.88525 0.91022 0.92254 0.90197 0.91843
0.88216 0.87801 0.89926 0.91781 0.92856 0.93510 0.95826 0.94132
0.92949 0.97303 0.93033 0.90093
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.68 8.57 71.23 0.61 -1.07 16
2 C 0.09 2.50 6.54 43.10 0.28 2.78 16
3 N -0.34 -9.11 12.70 -47.39 -0.60 -9.71 16
4 N -0.47 -9.49 7.36 -48.00 -0.35 -9.85 16
5 H 0.45 5.80 8.96 -213.33 -1.91 3.89 16
6 C 0.10 1.94 7.21 41.40 0.30 2.23 16
7 C -0.10 -1.05 10.07 71.24 0.72 -0.33 16
8 C -0.24 -5.56 4.34 -20.14 -0.09 -5.65 16
9 C -0.02 -0.36 2.78 -12.28 -0.03 -0.40 16
10 H 0.11 2.00 6.79 -2.39 -0.02 1.98 16
11 C -0.14 -2.37 9.02 71.98 0.65 -1.72 16
12 C 0.54 14.70 6.36 87.66 0.56 15.25 16
13 O -0.58 -20.10 14.89 -3.03 -0.05 -20.15 16
14 N -0.64 -15.79 3.36 -858.63 -2.89 -18.68 16
15 C 0.11 2.77 7.76 83.21 0.65 3.42 16
16 C -0.08 -2.15 0.83 -52.61 -0.04 -2.19 16
17 C 0.12 2.67 5.66 83.32 0.47 3.15 16
18 C -0.09 -2.88 5.25 30.57 0.16 -2.72 16
19 C 0.15 5.59 6.41 86.42 0.55 6.15 16
20 N -0.61 -28.26 2.95 -698.66 -2.06 -30.32 16
21 C -0.26 -13.64 9.55 84.03 0.80 -12.83 16
22 H 0.06 3.01 7.85 -2.91 -0.02 2.98 16
23 C -0.04 -2.33 5.04 84.86 0.43 -1.90 16
24 N -0.93 -52.06 11.08 21.65 0.24 -51.82 16
25 Si 0.96 43.44 29.57 68.60 2.03 45.47 16
26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
28 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
29 C 0.18 7.67 5.21 86.42 0.45 8.12 16
30 C -0.11 -3.48 5.31 30.57 0.16 -3.32 16
31 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16
32 H 0.07 1.80 5.46 -2.38 -0.01 1.79 16
33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16
35 H 0.10 0.91 7.14 -2.38 -0.02 0.90 16
36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16
37 H 0.07 1.13 5.98 -2.39 -0.01 1.11 16
38 H 0.06 1.05 6.03 -2.39 -0.01 1.03 16
39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
40 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16
41 H 0.10 2.13 8.09 -2.39 -0.02 2.11 16
42 H 0.10 2.05 7.81 -2.39 -0.02 2.03 16
43 H 0.08 1.87 7.53 -2.39 -0.02 1.85 16
44 H 0.06 1.84 7.95 -2.38 -0.02 1.82 16
45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
46 H 0.05 1.80 7.92 -2.38 -0.02 1.78 16
47 H 0.02 0.87 7.60 -2.39 -0.02 0.85 16
48 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16
49 H 0.05 2.64 6.06 -2.39 -0.01 2.63 16
50 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16
51 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16
52 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16
Total: -1.00 -71.17 399.63 1.96 -69.21
By element:
Atomic # 1 Polarization: 17.86 SS G_CDS: -0.98 Total: 16.88 kcal
Atomic # 6 Polarization: 2.34 SS G_CDS: 6.62 Total: 8.96 kcal
Atomic # 7 Polarization: -114.71 SS G_CDS: -5.66 Total: -120.37 kcal
Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal
Total: -71.17 1.96 -69.21 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050701295.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.067 kcal
(2) G-P(sol) polarization free energy of solvation -71.169 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.862 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds