Wall clock time and date at job start Wed Apr 1 2020 03:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30833 * 125.89795 * 2 1 4 4 N 1.40085 * 108.20689 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.04537 * 179.97438 * 4 3 2 6 6 C 1.34954 * 107.92288 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.12640 * 179.97438 * 6 4 3 8 8 C 1.35311 * 107.74504 * 0.02562 * 6 4 3 9 9 C 1.50707 * 126.03776 * 180.02562 * 8 6 4 10 10 H 1.08994 * 109.47228 * 359.97438 * 9 8 6 11 11 C 1.53008 * 109.46784 * 239.99387 * 9 8 6 12 12 C 1.50698 * 109.47122 * 119.99519 * 9 8 6 13 13 O 1.21281 * 120.00400 * 356.76989 * 12 9 8 14 14 N 1.34779 * 119.99881 * 176.76344 * 12 9 8 15 15 C 1.47168 * 136.00217 * 184.58828 * 14 12 9 16 16 C 1.52639 * 87.97030 * 206.72358 * 15 14 12 17 17 C 1.47158 * 135.99821 * 4.95867 * 14 12 9 18 18 C 1.52560 * 113.89977 * 88.17110 * 16 15 14 19 19 C 1.53350 * 109.13000 * 190.30389 * 18 16 15 20 20 N 1.46882 * 108.75465 * 307.75987 * 19 18 16 21 21 C 1.36939 * 120.46459 * 235.60848 * 20 19 18 22 22 H 1.08000 * 119.99734 * 32.58038 * 21 20 19 23 23 C 1.38813 * 120.00166 * 212.58988 * 21 20 19 24 24 N 1.31617 * 119.99677 * 10.52713 * 23 21 20 25 25 Si 1.86797 * 120.00009 * 190.53343 * 23 21 20 26 26 H 1.48494 * 109.47166 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46991 * 119.99576 * 25 23 21 28 28 H 1.48504 * 109.46722 * 239.99516 * 25 23 21 29 29 C 1.46889 * 119.07386 * 55.62261 * 20 19 18 30 30 C 1.52554 * 114.26043 * 220.76309 * 16 15 14 31 31 H 1.08997 * 109.47635 * 90.01863 * 1 2 3 32 32 H 1.09006 * 109.47165 * 210.01981 * 1 2 3 33 33 H 1.09004 * 109.47357 * 330.02014 * 1 2 3 34 34 H 1.09005 * 109.47146 * 89.97826 * 7 6 4 35 35 H 1.09005 * 109.47171 * 209.98030 * 7 6 4 36 36 H 1.08999 * 109.47171 * 329.97825 * 7 6 4 37 37 H 1.08994 * 109.46669 * 184.57620 * 11 9 8 38 38 H 1.08994 * 109.47090 * 304.57830 * 11 9 8 39 39 H 1.09003 * 109.46722 * 64.57615 * 11 9 8 40 40 H 1.09008 * 113.48196 * 321.41725 * 15 14 12 41 41 H 1.08998 * 113.48757 * 91.91765 * 15 14 12 42 42 H 1.08997 * 113.49047 * 268.07869 * 17 14 12 43 43 H 1.08997 * 113.49167 * 38.59204 * 17 14 12 44 44 H 1.09004 * 109.52527 * 310.19950 * 18 16 15 45 45 H 1.08999 * 109.52250 * 70.40923 * 18 16 15 46 46 H 1.09004 * 109.58990 * 187.97431 * 19 18 16 47 47 H 1.09003 * 109.59141 * 67.54335 * 19 18 16 48 48 H 0.96997 * 119.99967 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.59226 * 184.59077 * 29 20 19 50 50 H 1.09001 * 109.59192 * 64.14646 * 29 20 19 51 51 H 1.09008 * 109.52756 * 289.74983 * 30 16 15 52 52 H 1.09000 * 109.53028 * 49.88712 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5989 -0.0030 8 6 2.3271 -1.1330 -0.0021 9 6 1.8599 -2.5658 -0.0026 10 1 2.7242 -3.2298 -0.0030 11 6 1.0163 -2.8266 -1.2523 12 6 1.0284 -2.8235 1.2275 13 8 0.8828 -1.9491 2.0552 14 7 0.4465 -4.0257 1.4078 15 6 -0.4724 -4.6202 2.3917 16 6 0.1310 -5.9806 2.0525 17 6 0.4563 -5.3218 0.7109 18 6 1.3589 -6.3370 2.8847 19 6 2.0239 -7.5846 2.2905 20 7 1.0093 -8.6368 2.1456 21 6 1.1943 -9.8641 2.7241 22 1 1.7330 -9.9457 3.6566 23 6 0.6898 -11.0032 2.1120 24 7 0.2190 -10.9369 0.8847 25 14 0.6788 -12.6299 3.0301 26 1 1.2594 -12.4384 4.3834 27 1 -0.7179 -13.1185 3.1548 28 1 1.4868 -13.6261 2.2816 29 6 -0.2064 -8.3543 1.3711 30 6 -0.8877 -7.1124 1.9588 31 1 -0.3634 -0.0003 -1.0276 32 1 -0.3634 -0.8899 0.5142 33 1 -0.3634 0.8902 0.5135 34 1 5.1302 -1.8124 1.0244 35 1 4.6070 -2.5328 -0.5170 36 1 5.6506 -1.0908 -0.5173 37 1 0.6113 -3.8378 -1.2126 38 1 0.1974 -2.1086 -1.2942 39 1 1.6395 -2.7193 -2.1401 40 1 -0.2764 -4.3031 3.4161 41 1 -1.5229 -4.5296 2.1152 42 1 -0.3389 -5.4241 -0.0275 43 1 1.4353 -5.5964 0.3181 44 1 2.0638 -5.5057 2.8685 45 1 1.0564 -6.5396 3.9120 46 1 2.8153 -7.9291 2.9563 47 1 2.4439 -7.3448 1.3137 48 1 -0.1340 -11.7328 0.4570 49 1 -0.8841 -9.2058 1.4311 50 1 0.0584 -8.1678 0.3303 51 1 -1.2691 -7.3425 2.9537 52 1 -1.7121 -6.8082 1.3139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050701295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:01 Heat of formation + Delta-G solvation = 67.861847 kcal Electronic energy + Delta-G solvation = -31767.505934 eV Core-core repulsion = 27769.320526 eV Total energy + Delta-G solvation = -3998.185407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.53305 -41.81491 -39.54644 -37.44779 -35.31692 -34.32434 -34.13029 -32.23057 -31.51185 -30.99692 -29.02229 -28.54681 -27.66844 -27.00996 -26.08314 -24.72231 -23.86796 -22.48774 -21.16821 -20.90857 -19.84079 -19.42465 -18.32394 -18.28321 -17.56583 -16.81967 -16.68952 -16.57341 -15.97346 -15.75979 -15.52653 -15.23604 -14.84184 -14.80281 -14.62943 -14.45839 -14.13703 -13.99880 -13.91954 -13.68594 -13.52350 -13.33721 -13.26029 -13.12119 -12.98586 -12.94360 -12.84434 -12.74002 -12.55475 -12.45873 -12.25998 -12.18836 -11.95013 -11.76407 -11.39089 -11.25277 -11.16948 -11.05341 -10.59211 -10.41817 -10.17642 -9.58242 -9.34342 -8.50138 -7.79812 -5.30603 0.89388 1.48966 1.52073 1.60483 1.60831 1.71864 1.97287 2.10505 2.55450 3.31227 3.44703 3.58160 3.65702 3.74462 3.79372 3.90688 4.09565 4.16832 4.21501 4.24265 4.32696 4.39744 4.53022 4.54682 4.59915 4.67041 4.70072 4.71656 4.72161 4.77319 4.78287 4.85589 4.90143 4.92500 5.01685 5.04574 5.10780 5.11727 5.16313 5.20621 5.22674 5.28121 5.33220 5.43441 5.45611 5.64149 5.71364 5.73785 5.92276 6.45888 6.50967 6.74497 6.86147 7.25736 7.26311 7.96244 8.46715 9.24475 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002427 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.771780 B =11532.223779 C =11967.836724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.094 3.906 3 N -0.337 5.337 4 N -0.473 5.473 5 H 0.449 0.551 6 C 0.100 3.900 7 C -0.095 4.095 8 C -0.237 4.237 9 C -0.017 4.017 10 H 0.114 0.886 11 C -0.140 4.140 12 C 0.543 3.457 13 O -0.576 6.576 14 N -0.639 5.639 15 C 0.112 3.888 16 C -0.078 4.078 17 C 0.117 3.883 18 C -0.093 4.093 19 C 0.148 3.852 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.058 0.942 23 C -0.044 4.044 24 N -0.930 5.930 25 Si 0.960 3.040 26 H -0.271 1.271 27 H -0.291 1.291 28 H -0.293 1.293 29 C 0.179 3.821 30 C -0.110 4.110 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.046 0.954 47 H 0.024 0.976 48 H 0.249 0.751 49 H 0.052 0.948 50 H 0.009 0.991 51 H 0.051 0.949 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 18.457 -5.733 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 N -0.161 5.161 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.030 4.030 7 C -0.153 4.153 8 C -0.249 4.249 9 C -0.040 4.040 10 H 0.132 0.868 11 C -0.198 4.198 12 C 0.335 3.665 13 O -0.456 6.456 14 N -0.374 5.374 15 C -0.011 4.011 16 C -0.079 4.079 17 C -0.006 4.006 18 C -0.132 4.132 19 C 0.022 3.978 20 N -0.333 5.333 21 C -0.390 4.390 22 H 0.075 0.925 23 C -0.239 4.239 24 N -0.576 5.576 25 Si 0.789 3.211 26 H -0.196 1.196 27 H -0.217 1.217 28 H -0.220 1.220 29 C 0.054 3.946 30 C -0.150 4.150 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.027 0.973 51 H 0.070 0.930 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.249 20.300 -5.418 21.435 hybrid contribution 0.279 -1.543 0.628 1.689 sum 4.527 18.756 -4.790 19.881 Atomic orbital electron populations 1.20269 0.86659 1.03089 1.03063 1.22311 0.97441 0.90380 0.97035 1.77181 0.87707 1.23088 1.28143 1.46094 1.07008 1.05120 1.60001 0.70490 1.21355 0.97485 0.85252 0.98870 1.20655 0.91922 0.98356 1.04389 1.19294 0.91894 0.94779 1.18897 1.19434 0.98804 0.92922 0.92796 0.86840 1.21852 0.99886 1.02496 0.95526 1.20622 0.79375 0.78957 0.87590 1.90675 1.63626 1.44505 1.46790 1.49669 1.46671 1.10662 1.30366 1.23056 0.94869 0.89376 0.93804 1.21503 0.96676 0.93206 0.96551 1.23163 1.03277 0.78380 0.95741 1.21517 0.95777 0.97551 0.98359 1.20972 0.91012 0.88387 0.97389 1.44226 1.17677 1.09974 1.61383 1.19448 1.33273 0.84620 1.01668 0.92457 1.25793 1.01753 1.00453 0.95942 1.70100 1.46200 1.28549 1.12728 0.85316 0.76954 0.80460 0.78362 1.19558 1.21749 1.21987 1.20604 0.87818 0.94524 0.91668 1.21862 0.96827 0.95055 1.01224 0.89008 0.91139 0.91544 0.89602 0.88374 0.88525 0.91022 0.92254 0.90197 0.91843 0.88216 0.87801 0.89926 0.91781 0.92856 0.93510 0.95826 0.94132 0.92949 0.97303 0.93033 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 8.57 71.23 0.61 -1.07 16 2 C 0.09 2.50 6.54 43.10 0.28 2.78 16 3 N -0.34 -9.11 12.70 -47.39 -0.60 -9.71 16 4 N -0.47 -9.49 7.36 -48.00 -0.35 -9.85 16 5 H 0.45 5.80 8.96 -213.33 -1.91 3.89 16 6 C 0.10 1.94 7.21 41.40 0.30 2.23 16 7 C -0.10 -1.05 10.07 71.24 0.72 -0.33 16 8 C -0.24 -5.56 4.34 -20.14 -0.09 -5.65 16 9 C -0.02 -0.36 2.78 -12.28 -0.03 -0.40 16 10 H 0.11 2.00 6.79 -2.39 -0.02 1.98 16 11 C -0.14 -2.37 9.02 71.98 0.65 -1.72 16 12 C 0.54 14.70 6.36 87.66 0.56 15.25 16 13 O -0.58 -20.10 14.89 -3.03 -0.05 -20.15 16 14 N -0.64 -15.79 3.36 -858.63 -2.89 -18.68 16 15 C 0.11 2.77 7.76 83.21 0.65 3.42 16 16 C -0.08 -2.15 0.83 -52.61 -0.04 -2.19 16 17 C 0.12 2.67 5.66 83.32 0.47 3.15 16 18 C -0.09 -2.88 5.25 30.57 0.16 -2.72 16 19 C 0.15 5.59 6.41 86.42 0.55 6.15 16 20 N -0.61 -28.26 2.95 -698.66 -2.06 -30.32 16 21 C -0.26 -13.64 9.55 84.03 0.80 -12.83 16 22 H 0.06 3.01 7.85 -2.91 -0.02 2.98 16 23 C -0.04 -2.33 5.04 84.86 0.43 -1.90 16 24 N -0.93 -52.06 11.08 21.65 0.24 -51.82 16 25 Si 0.96 43.44 29.57 68.60 2.03 45.47 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 29 C 0.18 7.67 5.21 86.42 0.45 8.12 16 30 C -0.11 -3.48 5.31 30.57 0.16 -3.32 16 31 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16 32 H 0.07 1.80 5.46 -2.38 -0.01 1.79 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.10 0.91 7.14 -2.38 -0.02 0.90 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 1.13 5.98 -2.39 -0.01 1.11 16 38 H 0.06 1.05 6.03 -2.39 -0.01 1.03 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16 41 H 0.10 2.13 8.09 -2.39 -0.02 2.11 16 42 H 0.10 2.05 7.81 -2.39 -0.02 2.03 16 43 H 0.08 1.87 7.53 -2.39 -0.02 1.85 16 44 H 0.06 1.84 7.95 -2.38 -0.02 1.82 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 1.80 7.92 -2.38 -0.02 1.78 16 47 H 0.02 0.87 7.60 -2.39 -0.02 0.85 16 48 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 49 H 0.05 2.64 6.06 -2.39 -0.01 2.63 16 50 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 52 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -71.17 399.63 1.96 -69.21 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.98 Total: 16.88 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 6.62 Total: 8.96 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -5.66 Total: -120.37 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.17 1.96 -69.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050701295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.067 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds