Wall clock time and date at job start Wed Apr 1 2020 04:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34852 * 125.96391 * 2 1 4 4 N 1.36310 * 106.68924 * 179.97438 * 3 2 1 5 5 C 1.35425 * 107.40253 * 0.04806 * 4 3 2 6 6 N 1.30091 * 108.62332 * 359.93898 * 5 4 3 7 7 C 1.51039 * 123.98538 * 179.91833 * 5 4 3 8 8 C 1.53398 * 108.20813 * 344.03493 * 7 5 4 9 9 H 1.09001 * 109.51440 * 288.89069 * 8 7 5 10 10 C 1.50706 * 109.50622 * 168.79562 * 8 7 5 11 11 O 1.21276 * 119.99971 * 240.09257 * 10 8 7 12 12 N 1.34780 * 119.99775 * 60.09774 * 10 8 7 13 13 C 1.46498 * 119.99533 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.21044 * 35.63995 * 13 12 10 15 15 C 1.50134 * 109.20801 * 154.99865 * 13 12 10 16 16 C 1.52524 * 105.41631 * 218.02569 * 15 13 12 17 17 C 1.46235 * 114.27768 * 270.59290 * 16 15 13 18 18 N 1.50170 * 107.53381 * 58.40508 * 17 16 15 19 19 C 1.36937 * 120.53380 * 109.60954 * 18 17 16 20 20 H 1.07999 * 119.99977 * 156.72295 * 19 18 17 21 21 C 1.38812 * 120.00455 * 336.72354 * 19 18 17 22 22 N 1.31621 * 119.99582 * 340.40984 * 21 19 18 23 23 Si 1.86800 * 120.00250 * 160.40254 * 21 19 18 24 24 H 1.48497 * 109.47154 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46944 * 120.00136 * 23 21 19 26 26 H 1.48495 * 109.47356 * 240.00085 * 23 21 19 27 27 C 1.43427 * 118.92527 * 289.59036 * 18 17 16 28 28 C 1.54838 * 109.20932 * 276.31757 * 13 12 10 29 29 C 1.53151 * 109.28362 * 48.84432 * 8 7 5 30 30 C 1.46479 * 127.77631 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47614 * 90.00089 * 1 2 3 32 32 H 1.09007 * 109.47035 * 210.00133 * 1 2 3 33 33 H 1.09008 * 109.47030 * 329.99690 * 1 2 3 34 34 H 1.07999 * 126.65686 * 359.96623 * 3 2 1 35 35 H 1.08996 * 109.71372 * 224.36108 * 7 5 4 36 36 H 1.08997 * 109.75046 * 103.73342 * 7 5 4 37 37 H 0.96995 * 120.00059 * 359.97438 * 12 10 8 38 38 H 1.09001 * 110.24244 * 336.99534 * 15 13 12 39 39 H 1.08993 * 110.24803 * 98.90543 * 15 13 12 40 40 H 1.08992 * 108.52393 * 31.83580 * 16 15 13 41 41 H 1.08997 * 108.52017 * 149.35360 * 16 15 13 42 42 H 1.08997 * 109.85279 * 177.91648 * 17 16 15 43 43 H 1.09006 * 109.84719 * 298.90275 * 17 16 15 44 44 H 0.96998 * 119.99725 * 180.02562 * 22 21 19 45 45 H 1.09006 * 108.15869 * 213.28085 * 27 18 17 46 46 H 1.08997 * 108.16492 * 330.05996 * 27 18 17 47 47 H 1.08998 * 109.35882 * 321.00045 * 28 13 12 48 48 H 1.09006 * 109.36116 * 80.58721 * 28 13 12 49 49 H 1.09003 * 109.46050 * 50.50387 * 29 8 7 50 50 H 1.09004 * 109.46600 * 170.48633 * 29 8 7 51 51 H 1.09003 * 109.58125 * 282.61648 * 30 4 3 52 52 H 1.08997 * 109.58054 * 43.03150 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6415 0.0006 5 6 3.5414 -0.7120 -0.0002 6 7 2.2957 -1.0870 0.0002 7 6 4.7655 -1.5967 -0.0016 8 6 5.9743 -0.7418 -0.4029 9 1 5.9063 -0.4890 -1.4610 10 6 7.2433 -1.5148 -0.1507 11 8 8.0749 -1.0809 0.6180 12 7 7.4539 -2.6881 -0.7795 13 6 8.6876 -3.4391 -0.5347 14 1 8.9790 -3.3199 0.5088 15 6 8.4446 -4.8936 -0.8164 16 6 9.2298 -5.6499 0.2503 17 6 10.6091 -5.9590 -0.1243 18 7 11.2991 -4.6590 -0.4223 19 6 12.2602 -4.1718 0.4228 20 1 13.0015 -3.4779 0.0548 21 6 12.2818 -4.5698 1.7525 22 7 11.2029 -5.0850 2.3027 23 14 13.8422 -4.3744 2.7607 24 1 14.9056 -3.7740 1.9158 25 1 13.5736 -3.4882 3.9217 26 1 14.2876 -5.7051 3.2464 27 6 10.9356 -3.9361 -1.6065 28 6 9.8113 -2.8830 -1.4433 29 6 5.9840 0.5431 0.4304 30 6 4.8148 1.4382 0.0013 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.9763 2.1222 -0.0005 35 1 4.6332 -2.4063 -0.7194 36 1 4.9222 -2.0105 0.9945 37 1 6.7886 -3.0353 -1.3941 38 1 7.3818 -5.1212 -0.7349 39 1 8.8098 -5.1514 -1.8105 40 1 9.2442 -5.0500 1.1601 41 1 8.7113 -6.5846 0.4643 42 1 11.1121 -6.4645 0.7000 43 1 10.6185 -6.5944 -1.0100 44 1 11.2179 -5.3628 3.2320 45 1 11.8246 -3.4286 -1.9811 46 1 10.6156 -4.6563 -2.3595 47 1 9.3978 -2.6412 -2.4224 48 1 10.2248 -1.9796 -0.9948 49 1 5.8812 0.2921 1.4861 50 1 6.9243 1.0714 0.2725 51 1 4.9999 1.8253 -1.0007 52 1 4.7127 2.2667 0.7022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052499052.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:35 Heat of formation + Delta-G solvation = 42.801180 kcal Electronic energy + Delta-G solvation = -31362.312707 eV Core-core repulsion = 27363.040588 eV Total energy + Delta-G solvation = -3999.272119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.55174 -39.92015 -37.92535 -36.39510 -34.65196 -33.61331 -32.19214 -31.73620 -31.55629 -30.02514 -28.99180 -27.42990 -26.12656 -24.43214 -24.05081 -23.49473 -22.37185 -20.73560 -20.33116 -19.67792 -19.28334 -19.06874 -17.12536 -16.95464 -16.68801 -16.06211 -15.54825 -15.30096 -14.92042 -14.51947 -14.39120 -14.27158 -14.00892 -13.91885 -13.72187 -13.54935 -13.21160 -13.09640 -12.67860 -12.59908 -12.43451 -12.24090 -12.01861 -11.89257 -11.83317 -11.46332 -11.45086 -11.33927 -11.24745 -10.78433 -10.61033 -10.34067 -10.22990 -10.09438 -10.03826 -9.76859 -9.69180 -9.49943 -9.41413 -9.33441 -8.59781 -8.37355 -8.35642 -6.68877 -5.75779 -3.14350 1.83707 2.54950 2.80241 2.90495 3.35686 3.41001 3.49555 3.51285 3.99939 4.21171 4.33089 4.38652 4.54948 4.71184 4.82873 4.87185 4.91694 5.03606 5.14057 5.18158 5.35674 5.40935 5.42796 5.48209 5.50941 5.56716 5.62591 5.69350 5.74205 5.82896 5.86226 5.88961 6.01898 6.14056 6.26587 6.29451 6.42129 6.48005 6.61003 6.70976 6.87506 6.88910 6.94886 6.97135 7.01465 7.13132 7.23289 7.60639 7.77761 7.82914 7.95338 7.99310 8.46076 8.50391 9.22532 9.90003 10.42149 11.31975 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.002366 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.773499 B =11830.058934 C =12210.502344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.006 4.006 3 C -0.056 4.056 4 N -0.455 5.455 5 C 0.216 3.784 6 N -0.485 5.485 7 C -0.024 4.024 8 C -0.112 4.112 9 H 0.101 0.899 10 C 0.514 3.486 11 O -0.527 6.527 12 N -0.725 5.725 13 C 0.155 3.845 14 H 0.103 0.897 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.165 3.835 18 N -0.588 5.588 19 C -0.247 4.247 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.162 3.838 28 C -0.151 4.151 29 C -0.116 4.116 30 C 0.104 3.896 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.391 0.609 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.006 0.994 44 H 0.251 0.749 45 H 0.033 0.967 46 H 0.028 0.972 47 H 0.044 0.956 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.103 0.897 51 H 0.086 0.914 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.763 10.337 -8.065 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.189 4.189 4 N -0.138 5.138 5 C -0.047 4.047 6 N -0.205 5.205 7 C -0.063 4.063 8 C -0.135 4.135 9 H 0.119 0.881 10 C 0.298 3.702 11 O -0.402 6.402 12 N -0.375 5.375 13 C 0.052 3.948 14 H 0.121 0.879 15 C -0.159 4.159 16 C -0.168 4.168 17 C 0.041 3.959 18 N -0.309 5.309 19 C -0.377 4.377 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.032 3.968 28 C -0.193 4.193 29 C -0.154 4.154 30 C -0.018 4.018 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.225 0.775 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.024 0.976 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.121 0.879 51 H 0.104 0.896 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.266 9.876 -7.319 21.194 hybrid contribution 0.538 1.067 0.290 1.230 sum -16.728 10.943 -7.029 21.189 Atomic orbital electron populations 1.19993 0.87742 1.02498 1.01995 1.20801 0.96453 0.88335 1.07962 1.22285 0.82895 1.00338 1.13421 1.45397 1.06602 1.07464 1.54330 1.23101 0.94648 0.81591 1.05372 1.69954 0.99640 1.30400 1.20485 1.20128 0.86048 0.95427 1.04673 1.21463 0.93663 0.96081 1.02255 0.88134 1.20143 0.87367 0.81771 0.80908 1.90774 1.46080 1.67897 1.35469 1.46547 1.22615 1.22125 1.46223 1.21296 0.81622 0.89505 1.02334 0.87922 1.21362 0.99154 0.94777 1.00643 1.20922 0.96718 0.99253 0.99948 1.20170 0.91643 0.86632 0.97433 1.44276 1.43319 1.18745 1.24600 1.19227 1.03848 1.24901 0.89698 0.91504 1.24887 0.96935 1.01620 0.96120 1.69964 1.25428 1.46885 1.12164 0.86264 0.83484 0.77193 0.80077 1.20459 1.21919 1.21713 1.20353 0.94109 0.92382 0.89973 1.23303 0.97634 1.01191 0.97165 1.21751 0.97967 0.94572 1.01126 1.22093 0.81966 0.94444 1.03323 0.91612 0.91256 0.91539 0.81018 0.88174 0.88514 0.77540 0.92768 0.91906 0.87920 0.95152 0.89127 0.97582 0.93834 0.94858 0.95337 0.93773 0.92590 0.89823 0.87904 0.89555 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.42 36.00 0.38 -0.15 16 2 C -0.01 -0.07 7.10 -82.72 -0.59 -0.66 16 3 C -0.06 -0.55 11.55 -16.76 -0.19 -0.74 16 4 N -0.45 -4.64 3.13 -113.69 -0.36 -4.99 16 5 C 0.22 2.61 7.65 -155.24 -1.19 1.42 16 6 N -0.49 -6.68 11.24 -6.88 -0.08 -6.75 16 7 C -0.02 -0.25 5.47 -27.51 -0.15 -0.40 16 8 C -0.11 -1.17 2.54 -91.48 -0.23 -1.40 16 9 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 10 C 0.51 7.58 7.08 -10.98 -0.08 7.50 16 11 O -0.53 -10.38 15.49 5.56 0.09 -10.30 16 12 N -0.72 -10.24 4.88 -54.25 -0.26 -10.51 16 13 C 0.15 2.82 2.22 -68.39 -0.15 2.67 16 14 H 0.10 2.45 6.27 -51.93 -0.33 2.12 16 15 C -0.12 -2.05 5.33 -28.40 -0.15 -2.21 16 16 C -0.13 -2.67 5.02 -30.19 -0.15 -2.82 16 17 C 0.16 3.73 5.25 -5.20 -0.03 3.71 16 18 N -0.59 -14.16 2.60 -175.08 -0.46 -14.62 16 19 C -0.25 -6.67 9.63 -15.06 -0.14 -6.81 16 20 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -24.91 9.43 55.49 0.52 -24.39 16 23 Si 0.90 21.79 29.60 -169.99 -5.03 16.75 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 C 0.16 3.32 5.18 -4.66 -0.02 3.29 16 28 C -0.15 -2.83 5.98 -24.76 -0.15 -2.98 16 29 C -0.12 -1.13 4.68 -26.46 -0.12 -1.25 16 30 C 0.10 0.78 6.98 -3.86 -0.03 0.76 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 36 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 37 H 0.39 4.22 8.19 -40.82 -0.33 3.88 16 38 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 39 H 0.06 1.02 6.29 -51.93 -0.33 0.69 16 40 H 0.10 2.52 5.29 -51.93 -0.27 2.25 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 2.32 6.05 -51.93 -0.31 2.00 16 43 H 0.01 0.13 8.12 -51.93 -0.42 -0.30 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.03 0.69 7.99 -51.93 -0.41 0.27 16 46 H 0.03 0.53 6.88 -51.93 -0.36 0.17 16 47 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 50 H 0.10 1.03 7.79 -51.93 -0.40 0.62 16 51 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -32.85 397.06 -11.29 -44.14 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.61 Total: 4.79 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.09 Total: -0.11 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.63 Total: -61.26 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.85 -11.29 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052499052.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.943 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds