Wall clock time and date at job start Wed Apr 1 2020 03:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35363 * 126.38532 * 2 1 4 4 C 1.41507 * 105.50537 * 180.02562 * 3 2 1 5 5 C 1.47707 * 126.51944 * 179.97438 * 4 3 2 6 6 O 1.21566 * 120.00179 * 6.82591 * 5 4 3 7 7 N 1.34775 * 119.99682 * 186.82763 * 5 4 3 8 8 C 1.46922 * 120.63440 * 6.27204 * 7 5 4 9 9 C 1.53191 * 108.77752 * 126.37045 * 8 7 5 10 10 C 1.53035 * 109.31272 * 54.63467 * 9 8 7 11 11 C 1.53039 * 109.53990 * 298.63509 * 10 9 8 12 12 H 1.09000 * 109.52203 * 301.39833 * 11 10 9 13 13 C 1.52993 * 109.49842 * 181.31809 * 11 10 9 14 14 H 1.09002 * 109.52784 * 300.08047 * 13 11 10 15 15 C 1.53039 * 109.50071 * 60.16010 * 13 11 10 16 16 C 1.53042 * 109.53100 * 181.31085 * 15 13 11 17 17 C 1.53201 * 109.30879 * 298.64429 * 16 15 13 18 18 N 1.46923 * 108.77449 * 54.63426 * 17 16 15 19 19 C 1.36941 * 120.62783 * 126.41819 * 18 17 16 20 20 H 1.08002 * 119.99364 * 208.96085 * 19 18 17 21 21 C 1.38808 * 120.00212 * 28.95517 * 19 18 17 22 22 N 1.31616 * 119.99939 * 18.13559 * 21 19 18 23 23 Si 1.86800 * 119.99917 * 198.13172 * 21 19 18 24 24 H 1.48505 * 109.47174 * 90.00517 * 23 21 19 25 25 H 1.48500 * 109.47203 * 210.00190 * 23 21 19 26 26 H 1.48497 * 109.47125 * 330.00106 * 23 21 19 27 27 C 1.46922 * 118.73863 * 306.38646 * 18 17 16 28 28 C 1.46934 * 120.63004 * 186.24948 * 7 5 4 29 29 N 1.31805 * 106.96073 * 0.24655 * 4 3 2 30 30 N 1.28477 * 110.07340 * 359.58947 * 29 4 3 31 31 H 0.97001 * 124.88252 * 180.12705 * 30 29 4 32 32 H 1.08992 * 109.47405 * 89.99527 * 1 2 3 33 33 H 1.08999 * 109.47058 * 209.99726 * 1 2 3 34 34 H 1.09006 * 109.46574 * 329.98813 * 1 2 3 35 35 H 1.08005 * 127.25000 * 0.02562 * 3 2 1 36 36 H 1.08999 * 109.58558 * 246.15715 * 8 7 5 37 37 H 1.09008 * 109.58546 * 6.57851 * 8 7 5 38 38 H 1.09004 * 109.49248 * 174.58723 * 9 8 7 39 39 H 1.08998 * 109.49580 * 294.67881 * 9 8 7 40 40 H 1.08997 * 109.45800 * 178.61444 * 10 9 8 41 41 H 1.09000 * 109.46175 * 58.65897 * 10 9 8 42 42 H 1.09006 * 109.45636 * 61.29686 * 15 13 11 43 43 H 1.08997 * 109.46160 * 301.32379 * 15 13 11 44 44 H 1.08999 * 109.49643 * 58.59099 * 16 15 13 45 45 H 1.08998 * 109.49974 * 178.69128 * 16 15 13 46 46 H 1.08999 * 109.58160 * 174.42437 * 17 16 15 47 47 H 1.09002 * 109.58425 * 294.84387 * 17 16 15 48 48 H 0.97005 * 119.99852 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.58614 * 173.39680 * 27 18 17 50 50 H 1.08999 * 109.59011 * 293.68074 * 27 18 17 51 51 H 1.09001 * 109.58583 * 113.83694 * 28 7 5 52 52 H 1.08997 * 109.70100 * 353.48564 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6322 0.5854 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8255 2.5893 0.1236 7 7 6.0685 0.7679 -0.1407 8 6 6.1409 -0.6709 -0.4294 9 6 7.0082 -0.8809 -1.6746 10 6 8.3688 -0.2132 -1.4622 11 6 8.1744 1.2909 -1.2571 12 1 7.6715 1.7150 -2.1262 13 6 9.5374 1.9622 -1.0777 14 1 10.0406 1.5385 -0.2085 15 6 10.3906 1.7278 -2.3263 16 6 11.7659 2.3711 -2.1344 17 6 11.5962 3.8813 -1.9408 18 7 10.6611 4.1138 -0.8317 19 6 11.0119 4.9182 0.2196 20 1 10.5902 4.7422 1.1982 21 6 11.9094 5.9595 0.0275 22 7 12.1496 6.4055 -1.1873 23 14 12.7761 6.7278 1.4931 24 1 14.0494 6.0076 1.7486 25 1 13.0644 8.1558 1.2049 26 1 11.9036 6.6310 2.6908 27 6 9.3424 3.4674 -0.8723 28 6 7.3204 1.5255 -0.0072 29 7 3.5421 -0.7296 -0.0064 30 7 2.3081 -1.0871 -0.0007 31 1 1.9966 -2.0057 -0.0014 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5141 35 1 2.0057 2.1260 0.0004 36 1 6.5864 -1.1917 0.4182 37 1 5.1384 -1.0577 -0.6127 38 1 7.1492 -1.9485 -1.8438 39 1 6.5160 -0.4369 -2.5398 40 1 8.9966 -0.3822 -2.3370 41 1 8.8497 -0.6406 -0.5823 42 1 9.8988 2.1733 -3.1911 43 1 10.5103 0.6566 -2.4885 44 1 12.2480 1.9436 -1.2552 45 1 12.3812 2.1839 -3.0144 46 1 12.5612 4.3302 -1.7055 47 1 11.1978 4.3241 -2.8537 48 1 12.7771 7.1330 -1.3215 49 1 8.8202 3.6432 0.0683 50 1 8.7591 3.8783 -1.6963 51 1 7.8619 1.1838 0.8750 52 1 7.0982 2.5882 0.0894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053012292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:40 Heat of formation + Delta-G solvation = 55.149780 kcal Electronic energy + Delta-G solvation = -31280.787893 eV Core-core repulsion = 27282.051249 eV Total energy + Delta-G solvation = -3998.736644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.01964 -40.02866 -38.22217 -36.64856 -34.05748 -33.10454 -32.35599 -32.04967 -31.51820 -30.28618 -28.33273 -27.36332 -26.13436 -25.03616 -23.80392 -23.09181 -21.73907 -21.55921 -21.22520 -19.88829 -19.12934 -18.74807 -18.14949 -16.79865 -16.44587 -16.22666 -15.78939 -14.99350 -14.72531 -14.53136 -14.35787 -14.13626 -13.97928 -13.63194 -13.55325 -13.47055 -13.35053 -13.12492 -12.93274 -12.92182 -12.71732 -12.38892 -12.32259 -12.06394 -11.62536 -11.28075 -11.16522 -10.90604 -10.79041 -10.72531 -10.54885 -10.28564 -10.12846 -10.06272 -10.02150 -9.93584 -9.75637 -9.64628 -9.37993 -9.25282 -9.19035 -8.49426 -8.36239 -6.54106 -5.69182 -3.11173 1.32230 1.81973 2.45376 3.04144 3.34377 3.44660 3.51207 3.52951 4.11452 4.29495 4.53181 4.57435 4.80092 4.94304 4.97622 4.99626 5.07321 5.14448 5.28748 5.35159 5.36787 5.45725 5.49877 5.58257 5.65108 5.69726 5.74117 5.81412 5.82191 5.89393 5.96549 6.04443 6.09482 6.13581 6.21575 6.29364 6.34273 6.47403 6.53136 6.56286 6.61383 6.74337 6.77554 6.81369 6.96533 7.00919 7.15551 7.39426 7.48906 7.59583 7.74705 7.90188 8.20589 8.55897 9.31904 9.95776 10.53742 11.39340 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.002459 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.240155 B =11383.551902 C =12557.460956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.015 3.985 3 C -0.178 4.178 4 C 0.002 3.998 5 C 0.597 3.403 6 O -0.528 6.528 7 N -0.597 5.597 8 C 0.086 3.914 9 C -0.133 4.133 10 C -0.116 4.116 11 C -0.091 4.091 12 H 0.071 0.929 13 C -0.095 4.095 14 H 0.067 0.933 15 C -0.102 4.102 16 C -0.142 4.142 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.151 3.849 28 C 0.115 3.885 29 N -0.260 5.260 30 N -0.387 5.387 31 H 0.443 0.557 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.163 0.837 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.016 0.984 48 H 0.252 0.748 49 H 0.053 0.947 50 H 0.017 0.983 51 H 0.069 0.931 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.958 -20.913 -0.625 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.159 4.159 5 C 0.382 3.618 6 O -0.402 6.402 7 N -0.329 5.329 8 C -0.038 4.038 9 C -0.171 4.171 10 C -0.154 4.154 11 C -0.111 4.111 12 H 0.090 0.910 13 C -0.115 4.115 14 H 0.086 0.914 15 C -0.139 4.139 16 C -0.182 4.182 17 C 0.046 3.954 18 N -0.314 5.314 19 C -0.379 4.379 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.025 3.975 28 C -0.007 4.007 29 N -0.096 5.096 30 N -0.100 5.100 31 H 0.287 0.713 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.181 0.819 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.034 0.966 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.034 0.966 51 H 0.087 0.913 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.217 -20.990 -0.580 29.149 hybrid contribution -0.014 0.514 0.636 0.818 sum -20.232 -20.476 0.056 28.785 Atomic orbital electron populations 1.20368 0.86496 1.04053 1.03456 1.21465 0.95399 0.87157 1.07103 1.21563 0.90418 0.99909 1.08678 1.22030 0.95351 0.89562 1.08911 1.17007 0.81522 0.86219 0.77025 1.90828 1.86125 1.13037 1.50219 1.47960 1.05503 1.10049 1.69362 1.22451 1.03794 0.80331 0.97199 1.21925 0.96581 1.00593 0.98024 1.21651 0.96306 0.95267 1.02172 1.21506 0.96517 0.95249 0.97813 0.91031 1.21638 0.92987 0.98505 0.98405 0.91425 1.21458 0.96551 0.98635 0.97270 1.22183 0.95569 1.00683 0.99732 1.20731 0.95802 0.89172 0.89737 1.44036 1.10312 1.53996 1.23021 1.19185 1.24017 1.06566 0.88174 0.91767 1.25045 1.02194 0.96248 0.96198 1.70063 1.37072 1.27678 1.19818 0.86320 0.79984 0.78176 0.82513 1.21543 1.21847 1.20412 1.20961 0.88476 0.89349 0.98748 1.21843 0.82750 0.98218 0.97850 1.73386 1.00791 1.14947 1.20485 1.43493 1.03238 1.09517 1.53788 0.71316 0.90198 0.91100 0.89384 0.81903 0.91834 0.85981 0.91155 0.91888 0.91314 0.91941 0.92977 0.93543 0.92878 0.93558 0.90081 0.96580 0.93766 0.92838 0.96552 0.91302 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 10.44 36.01 0.38 0.10 16 2 C 0.01 0.10 7.23 -82.21 -0.59 -0.49 16 3 C -0.18 -1.88 10.74 -39.36 -0.42 -2.30 16 4 C 0.00 0.02 6.84 -82.77 -0.57 -0.54 16 5 C 0.60 9.28 7.69 -12.39 -0.10 9.18 16 6 O -0.53 -10.01 16.36 5.31 0.09 -9.93 16 7 N -0.60 -8.38 2.97 -173.93 -0.52 -8.89 16 8 C 0.09 0.95 6.13 -3.71 -0.02 0.93 16 9 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 10 C -0.12 -1.39 4.86 -26.69 -0.13 -1.52 16 11 C -0.09 -1.34 1.92 -90.51 -0.17 -1.51 16 12 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 13 C -0.09 -1.65 1.92 -90.52 -0.17 -1.83 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.10 -1.74 4.86 -26.69 -0.13 -1.87 16 16 C -0.14 -2.80 6.08 -26.61 -0.16 -2.97 16 17 C 0.17 4.24 5.30 -3.71 -0.02 4.22 16 18 N -0.59 -15.38 2.99 -172.34 -0.51 -15.90 16 19 C -0.25 -7.10 9.56 -15.06 -0.14 -7.25 16 20 H 0.06 1.81 7.89 -52.49 -0.41 1.39 16 21 C 0.00 0.05 4.87 -17.43 -0.08 -0.04 16 22 N -0.90 -27.07 11.34 55.49 0.63 -26.44 16 23 Si 0.90 22.41 29.59 -169.99 -5.03 17.38 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.15 3.32 5.28 -3.73 -0.02 3.30 16 28 C 0.11 1.75 5.21 -3.71 -0.02 1.73 16 29 N -0.26 -2.63 8.69 33.42 0.29 -2.34 16 30 N -0.39 -2.61 6.83 33.50 0.23 -2.38 16 31 H 0.44 1.24 8.96 -190.43 -1.71 -0.47 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.16 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.12 1.29 4.12 -75.26 -0.31 0.98 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.69 6.34 -51.93 -0.33 0.36 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 2.23 6.17 -51.93 -0.32 1.91 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.05 1.18 6.68 -51.93 -0.35 0.83 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 52 H 0.10 1.77 5.75 -51.93 -0.30 1.47 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -34.61 395.85 -11.36 -45.97 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -9.96 Total: -1.04 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.54 Total: -2.40 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.12 Total: -55.95 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.61 -11.36 -45.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053012292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.123 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds