Wall clock time and date at job start Wed Apr 1 2020 03:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35363 * 126.38532 * 2 1 4 4 C 1.41507 * 105.50537 * 180.02562 * 3 2 1 5 5 C 1.47707 * 126.51944 * 179.97438 * 4 3 2 6 6 O 1.21566 * 120.00179 * 6.82591 * 5 4 3 7 7 N 1.34775 * 119.99682 * 186.82763 * 5 4 3 8 8 C 1.46922 * 120.63440 * 6.27204 * 7 5 4 9 9 C 1.53191 * 108.77752 * 126.37045 * 8 7 5 10 10 C 1.53035 * 109.31272 * 54.63467 * 9 8 7 11 11 C 1.53039 * 109.53990 * 298.63509 * 10 9 8 12 12 H 1.09000 * 109.52203 * 301.39833 * 11 10 9 13 13 C 1.52993 * 109.49842 * 181.31809 * 11 10 9 14 14 H 1.09002 * 109.52784 * 300.08047 * 13 11 10 15 15 C 1.53039 * 109.50071 * 60.16010 * 13 11 10 16 16 C 1.53042 * 109.53100 * 181.31085 * 15 13 11 17 17 C 1.53201 * 109.30879 * 298.64429 * 16 15 13 18 18 N 1.46923 * 108.77449 * 54.63426 * 17 16 15 19 19 C 1.36941 * 120.62783 * 126.41819 * 18 17 16 20 20 H 1.08002 * 119.99364 * 208.96085 * 19 18 17 21 21 C 1.38808 * 120.00212 * 28.95517 * 19 18 17 22 22 N 1.31616 * 119.99939 * 18.13559 * 21 19 18 23 23 Si 1.86800 * 119.99917 * 198.13172 * 21 19 18 24 24 H 1.48505 * 109.47174 * 90.00517 * 23 21 19 25 25 H 1.48500 * 109.47203 * 210.00190 * 23 21 19 26 26 H 1.48497 * 109.47125 * 330.00106 * 23 21 19 27 27 C 1.46922 * 118.73863 * 306.38646 * 18 17 16 28 28 C 1.46934 * 120.63004 * 186.24948 * 7 5 4 29 29 N 1.31805 * 106.96073 * 0.24655 * 4 3 2 30 30 N 1.28477 * 110.07340 * 359.58947 * 29 4 3 31 31 H 0.97001 * 124.88252 * 180.12705 * 30 29 4 32 32 H 1.08992 * 109.47405 * 89.99527 * 1 2 3 33 33 H 1.08999 * 109.47058 * 209.99726 * 1 2 3 34 34 H 1.09006 * 109.46574 * 329.98813 * 1 2 3 35 35 H 1.08005 * 127.25000 * 0.02562 * 3 2 1 36 36 H 1.08999 * 109.58558 * 246.15715 * 8 7 5 37 37 H 1.09008 * 109.58546 * 6.57851 * 8 7 5 38 38 H 1.09004 * 109.49248 * 174.58723 * 9 8 7 39 39 H 1.08998 * 109.49580 * 294.67881 * 9 8 7 40 40 H 1.08997 * 109.45800 * 178.61444 * 10 9 8 41 41 H 1.09000 * 109.46175 * 58.65897 * 10 9 8 42 42 H 1.09006 * 109.45636 * 61.29686 * 15 13 11 43 43 H 1.08997 * 109.46160 * 301.32379 * 15 13 11 44 44 H 1.08999 * 109.49643 * 58.59099 * 16 15 13 45 45 H 1.08998 * 109.49974 * 178.69128 * 16 15 13 46 46 H 1.08999 * 109.58160 * 174.42437 * 17 16 15 47 47 H 1.09002 * 109.58425 * 294.84387 * 17 16 15 48 48 H 0.97005 * 119.99852 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.58614 * 173.39680 * 27 18 17 50 50 H 1.08999 * 109.59011 * 293.68074 * 27 18 17 51 51 H 1.09001 * 109.58583 * 113.83694 * 28 7 5 52 52 H 1.08997 * 109.70100 * 353.48564 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6322 0.5854 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8255 2.5893 0.1236 7 7 6.0685 0.7679 -0.1407 8 6 6.1409 -0.6709 -0.4294 9 6 7.0082 -0.8809 -1.6746 10 6 8.3688 -0.2132 -1.4622 11 6 8.1744 1.2909 -1.2571 12 1 7.6715 1.7150 -2.1262 13 6 9.5374 1.9622 -1.0777 14 1 10.0406 1.5385 -0.2085 15 6 10.3906 1.7278 -2.3263 16 6 11.7659 2.3711 -2.1344 17 6 11.5962 3.8813 -1.9408 18 7 10.6611 4.1138 -0.8317 19 6 11.0119 4.9182 0.2196 20 1 10.5902 4.7422 1.1982 21 6 11.9094 5.9595 0.0275 22 7 12.1496 6.4055 -1.1873 23 14 12.7761 6.7278 1.4931 24 1 14.0494 6.0076 1.7486 25 1 13.0644 8.1558 1.2049 26 1 11.9036 6.6310 2.6908 27 6 9.3424 3.4674 -0.8723 28 6 7.3204 1.5255 -0.0072 29 7 3.5421 -0.7296 -0.0064 30 7 2.3081 -1.0871 -0.0007 31 1 1.9966 -2.0057 -0.0014 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5141 35 1 2.0057 2.1260 0.0004 36 1 6.5864 -1.1917 0.4182 37 1 5.1384 -1.0577 -0.6127 38 1 7.1492 -1.9485 -1.8438 39 1 6.5160 -0.4369 -2.5398 40 1 8.9966 -0.3822 -2.3370 41 1 8.8497 -0.6406 -0.5823 42 1 9.8988 2.1733 -3.1911 43 1 10.5103 0.6566 -2.4885 44 1 12.2480 1.9436 -1.2552 45 1 12.3812 2.1839 -3.0144 46 1 12.5612 4.3302 -1.7055 47 1 11.1978 4.3241 -2.8537 48 1 12.7771 7.1330 -1.3215 49 1 8.8202 3.6432 0.0683 50 1 8.7591 3.8783 -1.6963 51 1 7.8619 1.1838 0.8750 52 1 7.0982 2.5882 0.0894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053012292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:39 Heat of formation + Delta-G solvation = 33.358134 kcal Electronic energy + Delta-G solvation = -31281.732849 eV Core-core repulsion = 27282.051249 eV Total energy + Delta-G solvation = -3999.681601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.74767 -41.19729 -39.68310 -38.07239 -35.61550 -34.13297 -33.44152 -32.98192 -32.73536 -32.21078 -29.73672 -27.94287 -27.51800 -26.74737 -25.02547 -24.35190 -23.36115 -22.56919 -22.23130 -21.21138 -20.65357 -19.83615 -18.91247 -18.64776 -17.59419 -17.06310 -17.00430 -16.74034 -16.04383 -15.85757 -15.68233 -15.40003 -15.02739 -14.85424 -14.83522 -14.78511 -14.30279 -14.15996 -14.06115 -14.01748 -13.78965 -13.63964 -13.59872 -13.21256 -13.05535 -12.87756 -12.70447 -12.41337 -12.31418 -12.18079 -11.99536 -11.89817 -11.73969 -11.54834 -11.43287 -11.39796 -11.19453 -10.86792 -10.79133 -10.53756 -10.45904 -9.91682 -9.62055 -8.66926 -7.88472 -5.34762 0.43549 1.09826 1.44459 1.45396 1.55116 1.73865 2.14084 2.28055 2.49847 3.24545 3.25158 3.59424 3.70557 3.79893 3.85754 3.98039 3.99130 4.12916 4.24749 4.27597 4.33287 4.39999 4.43223 4.51881 4.58476 4.64576 4.68175 4.78688 4.81568 4.83372 4.88307 4.92180 4.98454 5.05060 5.05799 5.08770 5.09536 5.12322 5.15968 5.24345 5.34440 5.36555 5.40141 5.44403 5.54380 5.57940 5.60252 5.66832 5.78201 6.12209 6.35803 6.38346 6.82343 7.08986 7.14157 7.85445 8.38303 9.17586 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.002459 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.240155 B =11383.551902 C =12557.460956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.041 3.959 3 C -0.211 4.211 4 C -0.029 4.029 5 C 0.587 3.413 6 O -0.580 6.580 7 N -0.595 5.595 8 C 0.082 3.918 9 C -0.126 4.126 10 C -0.111 4.111 11 C -0.079 4.079 12 H 0.056 0.944 13 C -0.080 4.080 14 H 0.068 0.932 15 C -0.095 4.095 16 C -0.131 4.131 17 C 0.175 3.825 18 N -0.610 5.610 19 C -0.264 4.264 20 H 0.062 0.938 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.271 1.271 27 C 0.151 3.849 28 C 0.117 3.883 29 N -0.259 5.259 30 N -0.364 5.364 31 H 0.463 0.537 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.155 0.845 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.048 0.952 47 H -0.010 1.010 48 H 0.250 0.750 49 H 0.042 0.958 50 H -0.003 1.003 51 H 0.076 0.924 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.295 -25.185 -0.411 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.239 4.239 4 C -0.188 4.188 5 C 0.375 3.625 6 O -0.459 6.459 7 N -0.326 5.326 8 C -0.040 4.040 9 C -0.164 4.164 10 C -0.148 4.148 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.100 4.100 14 H 0.087 0.913 15 C -0.133 4.133 16 C -0.170 4.170 17 C 0.050 3.950 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.079 0.921 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.195 1.195 27 C 0.025 3.975 28 C -0.006 4.006 29 N -0.096 5.096 30 N -0.081 5.081 31 H 0.312 0.688 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.173 0.827 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.008 0.992 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.015 0.985 51 H 0.094 0.906 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.566 -25.348 -0.372 33.283 hybrid contribution 0.260 1.831 0.565 1.934 sum -21.306 -23.516 0.194 31.733 Atomic orbital electron populations 1.20554 0.83229 1.05593 1.04852 1.21885 0.96945 0.85843 1.03931 1.21708 0.90458 1.00895 1.10814 1.21667 0.94633 0.90542 1.11935 1.17525 0.82817 0.85994 0.76162 1.90782 1.87018 1.15340 1.52756 1.48069 1.04582 1.11279 1.68643 1.22705 1.04851 0.78222 0.98194 1.21904 0.95102 1.02328 0.97051 1.21629 0.97693 0.92315 1.03182 1.21356 0.94239 0.97584 0.96709 0.92528 1.21426 0.94916 0.94757 0.98911 0.91332 1.21439 0.94534 1.00813 0.96471 1.22020 0.97699 0.96445 1.00830 1.20601 0.93631 0.92685 0.88102 1.44329 1.11921 1.54248 1.22800 1.19482 1.24096 1.06972 0.88864 0.92075 1.25848 1.03035 0.96935 0.98885 1.70218 1.37735 1.28282 1.21850 0.85259 0.78871 0.76920 0.79379 1.20735 1.22018 1.19533 1.21053 0.86528 0.92478 0.97416 1.21669 0.83738 0.96590 0.98579 1.73234 1.02416 1.13483 1.20449 1.43585 1.02270 1.10676 1.51601 0.68807 0.88707 0.88410 0.89023 0.82696 0.90531 0.85127 0.87839 0.92710 0.90115 0.90815 0.93486 0.89392 0.92808 0.91165 0.93375 0.99212 0.94086 0.93973 0.98539 0.90596 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.44 71.24 0.74 0.48 16 2 C 0.04 0.49 7.23 41.40 0.30 0.79 16 3 C -0.21 -4.46 10.74 22.41 0.24 -4.22 16 4 C -0.03 -0.74 6.84 42.46 0.29 -0.45 16 5 C 0.59 19.26 7.69 86.75 0.67 19.92 16 6 O -0.58 -24.05 16.36 -3.92 -0.06 -24.11 16 7 N -0.59 -16.91 2.97 -822.46 -2.44 -19.36 16 8 C 0.08 1.65 6.13 86.36 0.53 2.18 16 9 C -0.13 -2.20 6.08 30.67 0.19 -2.02 16 10 C -0.11 -2.29 4.86 30.62 0.15 -2.14 16 11 C -0.08 -2.28 1.92 -10.72 -0.02 -2.30 16 12 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.08 -2.76 1.92 -10.73 -0.02 -2.79 16 14 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.10 -3.10 4.86 30.62 0.15 -2.95 16 16 C -0.13 -5.04 6.08 30.68 0.19 -4.85 16 17 C 0.18 9.00 5.30 86.37 0.46 9.45 16 18 N -0.61 -33.09 2.99 -699.15 -2.09 -35.18 16 19 C -0.26 -15.58 9.56 84.03 0.80 -14.77 16 20 H 0.06 3.56 7.89 -2.91 -0.02 3.54 16 21 C -0.05 -3.06 4.87 84.86 0.41 -2.64 16 22 N -0.93 -58.39 11.34 21.65 0.25 -58.15 16 23 Si 0.97 47.30 29.59 68.60 2.03 49.33 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 26 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 27 C 0.15 6.97 5.28 86.35 0.46 7.42 16 28 C 0.12 3.68 5.21 86.36 0.45 4.13 16 29 N -0.26 -4.78 8.69 -48.18 -0.42 -5.19 16 30 N -0.36 -3.86 6.83 -47.93 -0.33 -4.19 16 31 H 0.46 0.76 8.96 -219.99 -1.97 -1.21 16 32 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.13 2.46 4.12 -32.57 -0.13 2.33 16 38 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.53 6.34 -2.39 -0.02 1.51 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.09 2.22 6.34 -2.39 -0.02 2.21 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.05 2.76 6.17 -2.39 -0.01 2.74 16 47 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 49 H 0.04 1.99 6.68 -2.38 -0.02 1.98 16 50 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 51 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.06 2.45 5.75 -2.39 -0.01 2.44 16 Total: -1.00 -81.61 395.85 1.74 -79.87 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -1.17 Total: 11.73 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.98 Total: 5.24 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.03 Total: -122.06 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.06 Total: -24.11 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -81.61 1.74 -79.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053012292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.224 kcal (2) G-P(sol) polarization free energy of solvation -81.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds