Wall clock time and date at job start Wed Apr 1 2020 03:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35358 * 126.38550 * 2 1 4 4 C 1.41499 * 105.50856 * 179.97438 * 3 2 1 5 5 C 1.47703 * 126.52296 * 179.97438 * 4 3 2 6 6 O 1.21576 * 120.00330 * 5.61309 * 5 4 3 7 7 N 1.34778 * 120.00236 * 185.61825 * 5 4 3 8 8 C 1.46931 * 120.63019 * 6.53926 * 7 5 4 9 9 C 1.53191 * 108.77602 * 233.61282 * 8 7 5 10 10 C 1.53041 * 109.31279 * 305.36208 * 9 8 7 11 11 C 1.53043 * 109.53491 * 61.36868 * 10 9 8 12 12 H 1.08997 * 109.50244 * 58.61880 * 11 10 9 13 13 C 1.53002 * 109.49687 * 178.68309 * 11 10 9 14 14 H 1.09007 * 109.49661 * 59.86775 * 13 11 10 15 15 C 1.53033 * 109.52303 * 299.78902 * 13 11 10 16 16 C 1.53047 * 109.53805 * 178.66843 * 15 13 11 17 17 C 1.52753 * 109.38549 * 61.23693 * 16 15 13 18 18 N 1.46931 * 109.00966 * 305.58944 * 17 16 15 19 19 C 1.36931 * 120.63192 * 233.58347 * 18 17 16 20 20 H 1.08006 * 120.00115 * 151.82027 * 19 18 17 21 21 C 1.38811 * 120.00284 * 332.10042 * 19 18 17 22 22 N 1.31620 * 120.00312 * 153.78134 * 21 19 18 23 23 Si 1.86804 * 119.99702 * 333.77886 * 21 19 18 24 24 H 1.48501 * 109.46917 * 95.86593 * 23 21 19 25 25 H 1.48493 * 109.47153 * 215.86838 * 23 21 19 26 26 H 1.48507 * 109.46974 * 335.86735 * 23 21 19 27 27 C 1.46928 * 118.73591 * 53.31000 * 18 17 16 28 28 C 1.46932 * 120.60897 * 186.56662 * 7 5 4 29 29 N 1.31808 * 106.95884 * 0.24186 * 4 3 2 30 30 N 1.28471 * 110.07552 * 359.59556 * 29 4 3 31 31 H 0.97003 * 124.88807 * 180.13386 * 30 29 4 32 32 H 1.08996 * 109.47358 * 90.00141 * 1 2 3 33 33 H 1.09005 * 109.46789 * 209.99800 * 1 2 3 34 34 H 1.09000 * 109.47260 * 329.99290 * 1 2 3 35 35 H 1.08005 * 127.24732 * 359.95989 * 3 2 1 36 36 H 1.08994 * 109.58760 * 113.82492 * 8 7 5 37 37 H 1.09005 * 109.70225 * 353.46581 * 8 7 5 38 38 H 1.08998 * 109.49919 * 185.40798 * 9 8 7 39 39 H 1.09000 * 109.49790 * 65.31461 * 9 8 7 40 40 H 1.08990 * 109.46042 * 301.34767 * 10 9 8 41 41 H 1.08998 * 109.45129 * 181.37567 * 10 9 8 42 42 H 1.09004 * 109.46320 * 298.68439 * 15 13 11 43 43 H 1.08997 * 109.46257 * 58.64638 * 15 13 11 44 44 H 1.08997 * 109.49749 * 181.31758 * 16 15 13 45 45 H 1.09000 * 109.49377 * 301.37613 * 16 15 13 46 46 H 1.09004 * 109.51512 * 185.70918 * 17 16 15 47 47 H 1.09003 * 109.43473 * 65.42358 * 17 16 15 48 48 H 0.96998 * 119.99898 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.59113 * 66.42785 * 27 18 17 50 50 H 1.09001 * 109.58743 * 186.86159 * 27 18 17 51 51 H 1.09001 * 109.61702 * 6.61263 * 28 7 5 52 52 H 1.08998 * 109.55911 * 246.19177 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8764 1.3812 0.0003 6 8 4.8240 2.5916 0.1025 7 7 6.0700 0.7657 -0.1133 8 6 6.1458 -0.6771 -0.3805 9 6 7.0301 -1.3304 0.6862 10 6 8.3880 -0.6252 0.7193 11 6 8.1913 0.8466 1.0900 12 1 7.7010 0.9149 2.0611 13 6 9.5521 1.5430 1.1550 14 1 10.0429 1.4738 0.1842 15 6 10.4224 0.8670 2.2168 16 6 11.7953 1.5421 2.2589 17 6 11.6259 3.0124 2.6366 18 7 10.6736 3.6382 1.7090 19 6 11.0106 4.7757 1.0253 20 1 10.5624 4.9810 0.0643 21 6 11.9326 5.6623 1.5646 22 7 12.6413 6.4380 0.7719 23 14 12.1676 5.7543 3.4155 24 1 13.3160 4.9004 3.8118 25 1 12.4363 7.1602 3.8110 26 1 10.9370 5.2755 4.0951 27 6 9.3552 3.0167 1.5244 28 6 7.3199 1.5250 0.0284 29 7 3.5420 -0.7296 -0.0044 30 7 2.3081 -1.0871 0.0005 31 1 1.9966 -2.0057 0.0002 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8901 0.5138 34 1 -0.3634 0.8899 0.5139 35 1 2.0056 2.1260 -0.0006 36 1 6.5792 -0.8438 -1.3666 37 1 5.1465 -1.1109 -0.3425 38 1 7.1730 -2.3837 0.4452 39 1 6.5502 -1.2417 1.6608 40 1 8.8563 -0.6929 -0.2625 41 1 9.0276 -1.1040 1.4607 42 1 9.9429 0.9582 3.1914 43 1 10.5438 -0.1876 1.9693 44 1 12.4225 1.0450 2.9989 45 1 12.2653 1.4723 1.2779 46 1 12.5887 3.5191 2.5687 47 1 11.2443 3.0836 3.6552 48 1 13.2853 7.0577 1.1488 49 1 8.7846 3.0881 2.4503 50 1 8.8201 3.5259 0.7228 51 1 7.0949 2.5456 0.3381 52 1 7.8488 1.5384 -0.9245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053012293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:43 Heat of formation + Delta-G solvation = 37.469526 kcal Electronic energy + Delta-G solvation = -31389.038751 eV Core-core repulsion = 27389.535434 eV Total energy + Delta-G solvation = -3999.503317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.75767 -41.21398 -39.80826 -38.17956 -35.64681 -34.23102 -33.52222 -33.00695 -32.83691 -32.55541 -30.00678 -27.97262 -27.54612 -26.68309 -25.22974 -24.32552 -23.35703 -22.72238 -22.24216 -21.28890 -20.73763 -19.87307 -18.96350 -18.73333 -17.65111 -17.26001 -16.97681 -16.84069 -16.14163 -15.93821 -15.64922 -15.49982 -15.11357 -15.09230 -14.83299 -14.81365 -14.44583 -14.36826 -14.07418 -14.04359 -13.82589 -13.69160 -13.65558 -13.47400 -13.27268 -13.00509 -12.61092 -12.54991 -12.40712 -12.25265 -12.03484 -11.79605 -11.63993 -11.59639 -11.43198 -11.40725 -11.23390 -11.05693 -10.74270 -10.57862 -10.46633 -9.93725 -9.62482 -8.91153 -8.20623 -5.46903 0.42182 1.09795 1.27131 1.38093 1.48961 1.72820 2.14032 2.27521 2.40402 2.99794 3.24652 3.34937 3.67511 3.76080 3.80584 3.94326 3.97367 4.12469 4.17853 4.21931 4.30119 4.34775 4.35591 4.45617 4.56529 4.58295 4.63245 4.68137 4.75070 4.77486 4.81569 4.90477 4.93244 4.98235 5.02387 5.05858 5.06890 5.08878 5.11462 5.16519 5.18562 5.29470 5.31355 5.35182 5.45094 5.50421 5.61746 5.65220 5.86791 6.10833 6.12335 6.35439 6.83609 6.92230 7.08844 7.62830 8.04540 8.99558 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002516 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.689323 B =11124.422682 C =12096.145508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.042 3.958 3 C -0.210 4.210 4 C -0.028 4.028 5 C 0.587 3.413 6 O -0.580 6.580 7 N -0.594 5.594 8 C 0.069 3.931 9 C -0.120 4.120 10 C -0.112 4.112 11 C -0.078 4.078 12 H 0.065 0.935 13 C -0.084 4.084 14 H 0.063 0.937 15 C -0.097 4.097 16 C -0.128 4.128 17 C 0.123 3.877 18 N -0.619 5.619 19 C -0.252 4.252 20 H 0.046 0.954 21 C -0.029 4.029 22 N -0.949 5.949 23 Si 0.938 3.062 24 H -0.271 1.271 25 H -0.306 1.306 26 H -0.270 1.270 27 C 0.149 3.851 28 C 0.115 3.885 29 N -0.259 5.259 30 N -0.364 5.364 31 H 0.463 0.537 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.069 0.931 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.025 0.975 48 H 0.262 0.738 49 H 0.020 0.980 50 H 0.043 0.957 51 H 0.064 0.936 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.152 -26.975 -0.235 36.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.238 4.238 4 C -0.186 4.186 5 C 0.375 3.625 6 O -0.458 6.458 7 N -0.325 5.325 8 C -0.053 4.053 9 C -0.158 4.158 10 C -0.150 4.150 11 C -0.098 4.098 12 H 0.083 0.917 13 C -0.105 4.105 14 H 0.082 0.918 15 C -0.134 4.134 16 C -0.167 4.167 17 C -0.002 4.002 18 N -0.343 5.343 19 C -0.381 4.381 20 H 0.064 0.936 21 C -0.225 4.225 22 N -0.594 5.594 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.235 1.235 26 H -0.195 1.195 27 C 0.024 3.976 28 C -0.007 4.007 29 N -0.096 5.096 30 N -0.081 5.081 31 H 0.312 0.688 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.174 0.826 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.038 0.962 50 H 0.061 0.939 51 H 0.082 0.918 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.418 -27.149 -0.205 35.854 hybrid contribution 0.119 1.692 0.557 1.785 sum -23.299 -25.457 0.352 34.511 Atomic orbital electron populations 1.20557 0.83242 1.05590 1.04866 1.21880 0.96928 0.85839 1.03885 1.21707 0.90439 1.00913 1.10771 1.21672 0.94629 0.90498 1.11830 1.17537 0.82833 0.86065 0.76051 1.90783 1.87096 1.15233 1.52720 1.48053 1.04514 1.10945 1.69019 1.22909 1.05851 0.77727 0.98784 1.21820 0.94749 1.00490 0.98772 1.21647 0.97842 0.92795 1.02667 1.21360 0.93958 0.96441 0.97999 0.91654 1.21460 0.95149 0.94221 0.99620 0.91846 1.21470 0.94041 0.99669 0.98250 1.21859 0.98361 0.94815 1.01689 1.21258 0.92527 0.94451 0.91962 1.44488 1.12255 1.26827 1.50729 1.18808 1.22337 0.98173 0.98797 0.93627 1.25849 0.98212 0.97044 1.01355 1.70030 1.25146 1.28181 1.36064 0.85952 0.78427 0.75678 0.83377 1.19720 1.23475 1.19458 1.21137 0.85578 0.93111 0.97736 1.21681 0.83862 0.95653 0.99511 1.72997 1.02319 1.13421 1.20823 1.43609 1.02268 1.10695 1.51508 0.68816 0.88676 0.88432 0.89027 0.82648 0.91241 0.84076 0.88095 0.92324 0.91334 0.89742 0.92193 0.89098 0.89860 0.92831 0.93725 0.95717 0.92880 0.96230 0.93863 0.91761 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.44 71.24 0.74 0.52 16 2 C 0.04 0.48 7.23 41.40 0.30 0.78 16 3 C -0.21 -4.32 10.73 22.41 0.24 -4.08 16 4 C -0.03 -0.68 6.88 42.45 0.29 -0.39 16 5 C 0.59 18.84 7.69 86.74 0.67 19.51 16 6 O -0.58 -23.54 16.37 -3.95 -0.06 -23.61 16 7 N -0.59 -16.52 2.97 -822.44 -2.44 -18.96 16 8 C 0.07 1.36 6.32 86.36 0.55 1.91 16 9 C -0.12 -1.96 6.08 30.67 0.19 -1.78 16 10 C -0.11 -2.15 4.86 30.62 0.15 -2.00 16 11 C -0.08 -2.07 1.92 -10.72 -0.02 -2.10 16 12 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 13 C -0.08 -2.71 1.92 -10.72 -0.02 -2.73 16 14 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 15 C -0.10 -2.74 4.86 30.62 0.15 -2.59 16 16 C -0.13 -4.34 6.06 30.53 0.19 -4.16 16 17 C 0.12 5.46 4.25 86.22 0.37 5.83 16 18 N -0.62 -31.28 2.74 -699.92 -1.92 -33.20 16 19 C -0.25 -15.23 9.97 84.03 0.84 -14.40 16 20 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 21 C -0.03 -1.79 5.09 84.86 0.43 -1.36 16 22 N -0.95 -61.91 13.97 21.65 0.30 -61.60 16 23 Si 0.94 48.91 24.59 68.60 1.69 50.60 16 24 H -0.27 -13.22 6.77 99.48 0.67 -12.54 16 25 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 26 H -0.27 -13.84 6.94 99.48 0.69 -13.15 16 27 C 0.15 6.37 5.29 86.36 0.46 6.83 16 28 C 0.12 3.55 5.18 86.36 0.45 4.00 16 29 N -0.26 -4.61 8.62 -48.18 -0.42 -5.02 16 30 N -0.36 -3.65 6.83 -47.93 -0.33 -3.97 16 31 H 0.46 0.52 8.96 -219.99 -1.97 -1.45 16 32 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.10 -0.19 8.14 -2.38 -0.02 -0.21 16 34 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 2.57 3.76 -76.51 -0.29 2.28 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.41 6.34 -2.39 -0.02 1.39 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.09 1.97 6.34 -2.39 -0.02 1.96 16 44 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.04 2.19 5.02 -2.38 -0.01 2.18 16 47 H 0.02 1.08 7.33 -2.39 -0.02 1.06 16 48 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 49 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.04 1.97 6.68 -2.39 -0.02 1.96 16 51 H 0.06 2.42 5.80 -2.39 -0.01 2.41 16 52 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -83.53 390.34 1.41 -82.13 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -1.37 Total: 9.84 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.96 Total: 3.79 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -4.80 Total: -122.75 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.69 Total: 50.60 kcal Total: -83.53 1.41 -82.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053012293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.596 kcal (2) G-P(sol) polarization free energy of solvation -83.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds