Wall clock time and date at job start Wed Apr 1 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35360 * 126.38423 * 2 1 4 4 C 1.41507 * 105.50586 * 179.97438 * 3 2 1 5 5 C 1.47709 * 126.51934 * 179.97438 * 4 3 2 6 6 O 1.21564 * 120.00151 * 6.89014 * 5 4 3 7 7 N 1.34781 * 119.99617 * 186.89349 * 5 4 3 8 8 C 1.46925 * 120.62998 * 5.38792 * 7 5 4 9 9 C 1.53194 * 108.77282 * 126.37125 * 8 7 5 10 10 C 1.53039 * 109.31149 * 54.63566 * 9 8 7 11 11 C 1.53038 * 109.53835 * 298.63214 * 10 9 8 12 12 C 1.46923 * 120.62888 * 185.36749 * 7 5 4 13 13 H 1.08999 * 109.58802 * 113.69955 * 12 7 5 14 14 C 1.53001 * 109.58717 * 353.41852 * 12 7 5 15 15 H 1.08994 * 109.49588 * 50.72233 * 14 12 7 16 16 C 1.53035 * 109.49741 * 170.78676 * 14 12 7 17 17 C 1.53040 * 109.53984 * 181.34956 * 16 14 12 18 18 C 1.53202 * 109.30952 * 298.63244 * 17 16 14 19 19 N 1.46925 * 108.77069 * 54.63528 * 18 17 16 20 20 C 1.36937 * 120.62928 * 126.39626 * 19 18 17 21 21 H 1.08001 * 120.00052 * 332.28117 * 20 19 18 22 22 C 1.38814 * 120.00324 * 152.29092 * 20 19 18 23 23 N 1.31612 * 120.00262 * 160.31604 * 22 20 19 24 24 Si 1.86800 * 119.99540 * 340.31004 * 22 20 19 25 25 H 1.48497 * 109.47153 * 95.10409 * 24 22 20 26 26 H 1.48503 * 109.46934 * 215.09784 * 24 22 20 27 27 H 1.48495 * 109.47289 * 335.09995 * 24 22 20 28 28 C 1.46923 * 118.74233 * 306.38645 * 19 18 17 29 29 N 1.31813 * 106.96004 * 0.25873 * 4 3 2 30 30 N 1.28475 * 110.07185 * 359.56044 * 29 4 3 31 31 H 0.96995 * 124.88141 * 180.16387 * 30 29 4 32 32 H 1.08994 * 109.47249 * 90.00494 * 1 2 3 33 33 H 1.09002 * 109.47498 * 210.00552 * 1 2 3 34 34 H 1.09004 * 109.47161 * 330.00435 * 1 2 3 35 35 H 1.08006 * 127.25183 * 359.97438 * 3 2 1 36 36 H 1.09008 * 109.58677 * 246.15579 * 8 7 5 37 37 H 1.08998 * 109.59255 * 6.58552 * 8 7 5 38 38 H 1.08998 * 109.49632 * 174.58481 * 9 8 7 39 39 H 1.08995 * 109.49728 * 294.68018 * 9 8 7 40 40 H 1.08998 * 109.46200 * 58.65543 * 10 9 8 41 41 H 1.09003 * 109.46107 * 178.61100 * 10 9 8 42 42 H 1.08997 * 109.50069 * 301.41398 * 11 10 9 43 43 H 1.09005 * 109.50001 * 181.31785 * 11 10 9 44 44 H 1.09004 * 109.46294 * 61.32712 * 16 14 12 45 45 H 1.09004 * 109.46356 * 301.36836 * 16 14 12 46 46 H 1.08997 * 109.50177 * 178.68415 * 17 16 14 47 47 H 1.09002 * 109.52686 * 58.59595 * 17 16 14 48 48 H 1.09001 * 109.58654 * 174.41751 * 18 17 16 49 49 H 1.08994 * 109.58382 * 294.84784 * 18 17 16 50 50 H 0.97001 * 120.00417 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.58882 * 293.82941 * 28 19 18 52 52 H 1.08994 * 109.70588 * 173.47002 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8764 1.3813 0.0003 6 8 4.8253 2.5893 0.1258 7 7 6.0685 0.7680 -0.1391 8 6 6.1412 -0.6744 -0.4093 9 6 7.0002 -0.8994 -1.6576 10 6 8.3611 -0.2269 -1.4635 11 6 8.1657 1.2794 -1.2768 12 6 7.3199 1.5292 -0.0243 13 1 7.8669 1.2018 0.8598 14 6 7.0036 3.0217 0.0919 15 1 6.2613 3.1763 0.8749 16 6 8.2810 3.7889 0.4403 17 6 7.9593 5.2776 0.5898 18 6 7.4197 5.8153 -0.7394 19 7 6.2774 4.9897 -1.1546 20 6 5.0720 5.5664 -1.4537 21 1 4.7909 6.5010 -0.9912 22 6 4.2111 4.9496 -2.3511 23 7 2.9326 5.2621 -2.3575 24 14 4.8673 3.6761 -3.5499 25 1 4.6762 2.3173 -2.9823 26 1 4.1333 3.7829 -4.8364 27 1 6.3140 3.9159 -3.7840 28 6 6.4531 3.5337 -1.2429 29 7 3.5420 -0.7296 -0.0048 30 7 2.3080 -1.0871 0.0006 31 1 1.9966 -2.0057 0.0006 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8901 0.5138 35 1 2.0056 2.1260 -0.0004 36 1 6.5934 -1.1833 0.4420 37 1 5.1382 -1.0651 -0.5807 38 1 7.1419 -1.9688 -1.8138 39 1 6.5014 -0.4675 -2.5252 40 1 8.8487 -0.6419 -0.5814 41 1 8.9834 -0.4065 -2.3403 42 1 7.6559 1.6909 -2.1480 43 1 9.1369 1.7609 -1.1620 44 1 9.0141 3.6539 -0.3550 45 1 8.6884 3.4096 1.3775 46 1 8.8649 5.8202 0.8608 47 1 7.2081 5.4117 1.3682 48 1 7.0965 6.8484 -0.6115 49 1 8.2011 5.7659 -1.4977 50 1 2.3310 4.8309 -2.9844 51 1 7.1558 3.2982 -2.0423 52 1 5.4935 3.0595 -1.4484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053072751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:21 Heat of formation + Delta-G solvation = 108.613031 kcal Electronic energy + Delta-G solvation = -33971.057689 eV Core-core repulsion = 29974.639386 eV Total energy + Delta-G solvation = -3996.418303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.56812 -40.43895 -37.22723 -36.93126 -33.49988 -32.94851 -32.28340 -32.02292 -31.28419 -30.35196 -28.50198 -27.06661 -25.44581 -25.01238 -23.80141 -23.26000 -22.06494 -21.15411 -20.60518 -20.46613 -19.01753 -18.22707 -17.68742 -16.56873 -16.21111 -15.82847 -15.55547 -14.99790 -14.78824 -14.31782 -14.13667 -13.80308 -13.77712 -13.60410 -13.57645 -13.26258 -13.07742 -13.04489 -12.95282 -12.67149 -12.53337 -12.29536 -12.04607 -11.86203 -11.60294 -11.32997 -11.21572 -11.00974 -10.78433 -10.64525 -10.59341 -10.28510 -10.10506 -9.94431 -9.84180 -9.54534 -9.39898 -9.21795 -8.86993 -8.78700 -8.50166 -8.31096 -7.96179 -6.59698 -5.67214 -2.98308 1.76335 2.32892 2.86427 3.36342 3.50814 3.61782 3.66306 3.84551 4.53130 4.74262 4.78961 4.86117 4.97828 5.00564 5.07753 5.23507 5.27167 5.40163 5.42522 5.51027 5.57425 5.61515 5.67590 5.73241 5.74006 5.81371 5.86024 5.88864 5.92191 5.99530 6.02675 6.09498 6.21477 6.21634 6.28124 6.36733 6.39186 6.41361 6.53643 6.58668 6.66723 6.73081 6.85241 6.91728 6.95862 7.08814 7.16000 7.26778 7.50244 7.80978 8.02370 8.28783 8.60026 8.76926 9.26219 10.04584 10.43970 11.49935 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009387 B = 0.006113 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.253308 B = 4579.482206 C = 6136.408874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.008 3.992 3 C -0.168 4.168 4 C 0.007 3.993 5 C 0.571 3.429 6 O -0.457 6.457 7 N -0.602 5.602 8 C 0.087 3.913 9 C -0.136 4.136 10 C -0.118 4.118 11 C -0.141 4.141 12 C 0.157 3.843 13 H 0.066 0.934 14 C -0.111 4.111 15 H 0.115 0.885 16 C -0.109 4.109 17 C -0.132 4.132 18 C 0.148 3.852 19 N -0.601 5.601 20 C -0.239 4.239 21 H 0.080 0.920 22 C 0.033 3.967 23 N -0.913 5.913 24 Si 0.876 3.124 25 H -0.293 1.293 26 H -0.311 1.311 27 H -0.274 1.274 28 C 0.139 3.861 29 N -0.272 5.272 30 N -0.392 5.392 31 H 0.439 0.561 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.016 0.984 50 H 0.256 0.744 51 H 0.007 0.993 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -17.018 5.989 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.195 4.195 4 C -0.154 4.154 5 C 0.356 3.644 6 O -0.328 6.328 7 N -0.337 5.337 8 C -0.036 4.036 9 C -0.174 4.174 10 C -0.155 4.155 11 C -0.179 4.179 12 C 0.054 3.946 13 H 0.084 0.916 14 C -0.131 4.131 15 H 0.132 0.868 16 C -0.147 4.147 17 C -0.171 4.171 18 C 0.021 3.979 19 N -0.323 5.323 20 C -0.368 4.368 21 H 0.098 0.902 22 C -0.165 4.165 23 N -0.557 5.557 24 Si 0.709 3.291 25 H -0.221 1.221 26 H -0.240 1.240 27 H -0.200 1.200 28 C 0.014 3.986 29 N -0.108 5.108 30 N -0.105 5.105 31 H 0.282 0.718 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.186 0.814 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.034 0.966 50 H 0.066 0.934 51 H 0.024 0.976 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.437 -17.215 5.985 18.547 hybrid contribution -0.180 -0.821 -0.873 1.212 sum 3.257 -18.036 5.111 19.027 Atomic orbital electron populations 1.20333 0.86688 1.03738 1.03349 1.21415 0.95287 0.87146 1.07873 1.21733 0.90442 1.00307 1.07022 1.22237 0.95812 0.89312 1.08024 1.17170 0.81378 0.86658 0.79146 1.91076 1.84969 1.11432 1.45277 1.47797 1.05134 1.09067 1.71662 1.22393 1.04043 0.80763 0.96417 1.21935 0.96384 1.00281 0.98840 1.21523 0.96789 0.95824 1.01391 1.22164 1.00365 0.95806 0.99564 1.21343 0.83553 0.92988 0.96716 0.91570 1.22452 0.97100 0.89785 1.03790 0.86766 1.21569 0.97419 0.96209 0.99548 1.21957 0.99551 0.95353 1.00228 1.20902 0.89625 0.94802 0.92529 1.44279 1.08679 1.00504 1.78870 1.18831 0.91472 1.07498 1.18952 0.90246 1.25073 0.95387 0.97664 0.98376 1.69834 1.02120 1.45280 1.38505 0.87005 0.78838 0.81932 0.81364 1.22079 1.24018 1.19965 1.21862 0.99644 0.84994 0.92071 1.73241 1.00798 1.15171 1.21607 1.43396 1.03312 1.09196 1.54600 0.71778 0.90365 0.91458 0.89338 0.81403 0.92254 0.85649 0.91262 0.91834 0.92096 0.92143 0.90707 0.90798 0.93144 0.93641 0.93271 0.92092 0.92367 0.96611 0.93429 0.97596 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.44 36.00 0.38 -0.34 16 2 C 0.01 0.11 7.23 -82.21 -0.59 -0.49 16 3 C -0.17 -2.94 10.74 -39.36 -0.42 -3.36 16 4 C 0.01 0.12 6.84 -82.76 -0.57 -0.44 16 5 C 0.57 11.78 6.86 -12.39 -0.08 11.69 16 6 O -0.46 -11.14 10.14 5.31 0.05 -11.08 16 7 N -0.60 -10.59 2.95 -166.37 -0.49 -11.08 16 8 C 0.09 1.24 6.15 -3.71 -0.02 1.21 16 9 C -0.14 -1.76 6.08 -26.61 -0.16 -1.92 16 10 C -0.12 -1.47 5.88 -26.69 -0.16 -1.62 16 11 C -0.14 -2.18 4.64 -26.61 -0.12 -2.31 16 12 C 0.16 2.66 2.64 -67.60 -0.18 2.48 16 13 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 14 C -0.11 -2.24 1.57 -90.50 -0.14 -2.39 16 15 H 0.11 2.62 5.67 -52.78 -0.30 2.32 16 16 C -0.11 -1.91 4.97 -26.69 -0.13 -2.04 16 17 C -0.13 -2.43 6.08 -26.61 -0.16 -2.59 16 18 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 19 N -0.60 -15.78 2.77 -172.32 -0.48 -16.26 16 20 C -0.24 -7.23 10.04 -15.06 -0.15 -7.39 16 21 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 22 C 0.03 1.01 5.25 -17.43 -0.09 0.92 16 23 N -0.91 -29.39 13.97 55.49 0.78 -28.62 16 24 Si 0.88 24.67 24.35 -169.99 -4.14 20.53 16 25 H -0.29 -8.18 6.72 56.52 0.38 -7.80 16 26 H -0.31 -8.82 7.11 56.52 0.40 -8.42 16 27 H -0.27 -7.63 6.41 56.52 0.36 -7.27 16 28 C 0.14 3.38 2.05 -3.71 -0.01 3.37 16 29 N -0.27 -4.03 8.67 33.42 0.29 -3.74 16 30 N -0.39 -4.49 6.83 33.50 0.23 -4.26 16 31 H 0.44 3.05 8.96 -190.44 -1.71 1.35 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.17 3.23 8.06 -52.48 -0.42 2.81 16 36 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.13 1.82 4.07 -80.56 -0.33 1.49 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.40 5.88 -51.93 -0.31 1.09 16 43 H 0.07 1.04 7.04 -51.93 -0.37 0.67 16 44 H 0.05 0.84 6.94 -51.93 -0.36 0.48 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 51 H 0.01 0.16 4.70 -51.92 -0.24 -0.08 16 52 H 0.10 2.63 1.55 -51.63 -0.08 2.55 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -36.72 376.89 -10.37 -47.08 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -9.64 Total: 3.73 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.65 Total: -1.99 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: 0.33 Total: -63.95 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.05 Total: -11.08 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.14 Total: 20.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.72 -10.37 -47.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053072751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.695 kcal (2) G-P(sol) polarization free energy of solvation -36.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds