Wall clock time and date at job start Wed Apr 1 2020 03:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35360 * 126.38423 * 2 1 4 4 C 1.41507 * 105.50586 * 179.97438 * 3 2 1 5 5 C 1.47709 * 126.51934 * 179.97438 * 4 3 2 6 6 O 1.21564 * 120.00151 * 6.89014 * 5 4 3 7 7 N 1.34781 * 119.99617 * 186.89349 * 5 4 3 8 8 C 1.46925 * 120.62998 * 5.38792 * 7 5 4 9 9 C 1.53194 * 108.77282 * 126.37125 * 8 7 5 10 10 C 1.53039 * 109.31149 * 54.63566 * 9 8 7 11 11 C 1.53038 * 109.53835 * 298.63214 * 10 9 8 12 12 C 1.46923 * 120.62888 * 185.36749 * 7 5 4 13 13 H 1.08999 * 109.58802 * 113.69955 * 12 7 5 14 14 C 1.53001 * 109.58717 * 353.41852 * 12 7 5 15 15 H 1.08994 * 109.49588 * 50.72233 * 14 12 7 16 16 C 1.53035 * 109.49741 * 170.78676 * 14 12 7 17 17 C 1.53040 * 109.53984 * 181.34956 * 16 14 12 18 18 C 1.53202 * 109.30952 * 298.63244 * 17 16 14 19 19 N 1.46925 * 108.77069 * 54.63528 * 18 17 16 20 20 C 1.36937 * 120.62928 * 126.39626 * 19 18 17 21 21 H 1.08001 * 120.00052 * 332.28117 * 20 19 18 22 22 C 1.38814 * 120.00324 * 152.29092 * 20 19 18 23 23 N 1.31612 * 120.00262 * 160.31604 * 22 20 19 24 24 Si 1.86800 * 119.99540 * 340.31004 * 22 20 19 25 25 H 1.48497 * 109.47153 * 95.10409 * 24 22 20 26 26 H 1.48503 * 109.46934 * 215.09784 * 24 22 20 27 27 H 1.48495 * 109.47289 * 335.09995 * 24 22 20 28 28 C 1.46923 * 118.74233 * 306.38645 * 19 18 17 29 29 N 1.31813 * 106.96004 * 0.25873 * 4 3 2 30 30 N 1.28475 * 110.07185 * 359.56044 * 29 4 3 31 31 H 0.96995 * 124.88141 * 180.16387 * 30 29 4 32 32 H 1.08994 * 109.47249 * 90.00494 * 1 2 3 33 33 H 1.09002 * 109.47498 * 210.00552 * 1 2 3 34 34 H 1.09004 * 109.47161 * 330.00435 * 1 2 3 35 35 H 1.08006 * 127.25183 * 359.97438 * 3 2 1 36 36 H 1.09008 * 109.58677 * 246.15579 * 8 7 5 37 37 H 1.08998 * 109.59255 * 6.58552 * 8 7 5 38 38 H 1.08998 * 109.49632 * 174.58481 * 9 8 7 39 39 H 1.08995 * 109.49728 * 294.68018 * 9 8 7 40 40 H 1.08998 * 109.46200 * 58.65543 * 10 9 8 41 41 H 1.09003 * 109.46107 * 178.61100 * 10 9 8 42 42 H 1.08997 * 109.50069 * 301.41398 * 11 10 9 43 43 H 1.09005 * 109.50001 * 181.31785 * 11 10 9 44 44 H 1.09004 * 109.46294 * 61.32712 * 16 14 12 45 45 H 1.09004 * 109.46356 * 301.36836 * 16 14 12 46 46 H 1.08997 * 109.50177 * 178.68415 * 17 16 14 47 47 H 1.09002 * 109.52686 * 58.59595 * 17 16 14 48 48 H 1.09001 * 109.58654 * 174.41751 * 18 17 16 49 49 H 1.08994 * 109.58382 * 294.84784 * 18 17 16 50 50 H 0.97001 * 120.00417 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.58882 * 293.82941 * 28 19 18 52 52 H 1.08994 * 109.70588 * 173.47002 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8764 1.3813 0.0003 6 8 4.8253 2.5893 0.1258 7 7 6.0685 0.7680 -0.1391 8 6 6.1412 -0.6744 -0.4093 9 6 7.0002 -0.8994 -1.6576 10 6 8.3611 -0.2269 -1.4635 11 6 8.1657 1.2794 -1.2768 12 6 7.3199 1.5292 -0.0243 13 1 7.8669 1.2018 0.8598 14 6 7.0036 3.0217 0.0919 15 1 6.2613 3.1763 0.8749 16 6 8.2810 3.7889 0.4403 17 6 7.9593 5.2776 0.5898 18 6 7.4197 5.8153 -0.7394 19 7 6.2774 4.9897 -1.1546 20 6 5.0720 5.5664 -1.4537 21 1 4.7909 6.5010 -0.9912 22 6 4.2111 4.9496 -2.3511 23 7 2.9326 5.2621 -2.3575 24 14 4.8673 3.6761 -3.5499 25 1 4.6762 2.3173 -2.9823 26 1 4.1333 3.7829 -4.8364 27 1 6.3140 3.9159 -3.7840 28 6 6.4531 3.5337 -1.2429 29 7 3.5420 -0.7296 -0.0048 30 7 2.3080 -1.0871 0.0006 31 1 1.9966 -2.0057 0.0006 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8901 0.5138 35 1 2.0056 2.1260 -0.0004 36 1 6.5934 -1.1833 0.4420 37 1 5.1382 -1.0651 -0.5807 38 1 7.1419 -1.9688 -1.8138 39 1 6.5014 -0.4675 -2.5252 40 1 8.8487 -0.6419 -0.5814 41 1 8.9834 -0.4065 -2.3403 42 1 7.6559 1.6909 -2.1480 43 1 9.1369 1.7609 -1.1620 44 1 9.0141 3.6539 -0.3550 45 1 8.6884 3.4096 1.3775 46 1 8.8649 5.8202 0.8608 47 1 7.2081 5.4117 1.3682 48 1 7.0965 6.8484 -0.6115 49 1 8.2011 5.7659 -1.4977 50 1 2.3310 4.8309 -2.9844 51 1 7.1558 3.2982 -2.0423 52 1 5.4935 3.0595 -1.4484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053072751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:20 Heat of formation + Delta-G solvation = 82.484222 kcal Electronic energy + Delta-G solvation = -33972.190720 eV Core-core repulsion = 29974.639386 eV Total energy + Delta-G solvation = -3997.551334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.74568 -41.86506 -38.89998 -38.29938 -35.24479 -34.35443 -33.57577 -33.37188 -32.66937 -32.26496 -29.91617 -28.02484 -27.10561 -26.79538 -25.01204 -24.76100 -23.78813 -22.40083 -22.08239 -21.64271 -20.68809 -19.58529 -18.82499 -18.65691 -17.65419 -17.21812 -16.99168 -16.68265 -16.16680 -15.89515 -15.51344 -15.49164 -15.18796 -15.05911 -14.91557 -14.76207 -14.49198 -14.29185 -14.13596 -13.94944 -13.86314 -13.75715 -13.48163 -13.33527 -13.09719 -12.99431 -12.72809 -12.55413 -12.41012 -12.08508 -12.00121 -11.81082 -11.69150 -11.62417 -11.43833 -11.20106 -11.05866 -10.90186 -10.59621 -10.26069 -10.03823 -9.92402 -9.36524 -8.73623 -8.10347 -5.35833 0.49746 1.08453 1.21000 1.25263 1.35861 1.80337 2.16298 2.41003 2.43023 3.12689 3.28012 3.48774 3.70999 3.82578 3.87712 3.95586 4.04267 4.10988 4.15924 4.22763 4.27083 4.35055 4.40680 4.50538 4.59423 4.60664 4.64380 4.70934 4.74651 4.87446 4.90626 4.91268 4.95228 4.99301 5.03372 5.05871 5.09231 5.10482 5.15321 5.19118 5.22078 5.33865 5.36988 5.40347 5.46407 5.50746 5.65542 5.90257 6.01567 6.13062 6.18196 6.46996 6.85741 7.04739 7.32469 7.76479 8.17172 9.10786 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009387 B = 0.006113 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.253308 B = 4579.482206 C = 6136.408874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.040 3.960 3 C -0.220 4.220 4 C -0.028 4.028 5 C 0.559 3.441 6 O -0.513 6.513 7 N -0.600 5.600 8 C 0.082 3.918 9 C -0.134 4.134 10 C -0.111 4.111 11 C -0.139 4.139 12 C 0.155 3.845 13 H 0.098 0.902 14 C -0.103 4.103 15 H 0.081 0.919 16 C -0.105 4.105 17 C -0.123 4.123 18 C 0.138 3.862 19 N -0.618 5.618 20 C -0.229 4.229 21 H 0.045 0.955 22 C -0.017 4.017 23 N -0.953 5.953 24 Si 0.942 3.058 25 H -0.299 1.299 26 H -0.313 1.313 27 H -0.269 1.269 28 C 0.140 3.860 29 N -0.257 5.257 30 N -0.364 5.364 31 H 0.463 0.537 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.048 0.952 49 H 0.031 0.969 50 H 0.255 0.745 51 H 0.002 0.998 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -21.202 6.676 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.248 4.248 4 C -0.187 4.187 5 C 0.346 3.654 6 O -0.388 6.388 7 N -0.334 5.334 8 C -0.040 4.040 9 C -0.172 4.172 10 C -0.148 4.148 11 C -0.177 4.177 12 C 0.052 3.948 13 H 0.116 0.884 14 C -0.123 4.123 15 H 0.099 0.901 16 C -0.143 4.143 17 C -0.162 4.162 18 C 0.014 3.986 19 N -0.342 5.342 20 C -0.359 4.359 21 H 0.063 0.937 22 C -0.212 4.212 23 N -0.601 5.601 24 Si 0.775 3.225 25 H -0.227 1.227 26 H -0.243 1.243 27 H -0.194 1.194 28 C 0.016 3.984 29 N -0.094 5.094 30 N -0.081 5.081 31 H 0.312 0.688 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.049 0.951 50 H 0.064 0.936 51 H 0.020 0.980 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.931 -21.469 6.678 23.253 hybrid contribution -1.007 0.466 -1.003 1.495 sum 4.924 -21.003 5.675 22.307 Atomic orbital electron populations 1.20533 0.83249 1.05619 1.04626 1.21767 0.96905 0.85795 1.04239 1.21631 0.91773 1.00255 1.11114 1.22076 0.95306 0.90587 1.10746 1.17614 0.82846 0.86429 0.78520 1.91053 1.85966 1.13654 1.48124 1.47986 1.04478 1.10563 1.70372 1.22639 1.04541 0.78701 0.98153 1.21949 0.96186 1.02297 0.96760 1.21520 0.96725 0.93186 1.03414 1.22141 1.00254 0.98424 0.96845 1.21459 0.83737 0.90707 0.98875 0.88397 1.22132 0.97502 0.92733 0.99959 0.90095 1.21567 0.96200 0.94760 1.01741 1.21862 1.00405 0.96843 0.97098 1.21141 0.88569 0.94068 0.94864 1.44485 1.08497 1.02096 1.79122 1.18774 0.93176 1.06225 1.17739 0.93718 1.25553 0.95494 1.00012 1.00117 1.69943 1.03167 1.47305 1.39645 0.85947 0.78182 0.79577 0.78827 1.22701 1.24303 1.19367 1.21819 0.98594 0.83518 0.94419 1.73180 1.02124 1.13108 1.20950 1.43483 1.02301 1.10263 1.52078 0.68764 0.89206 0.87434 0.89618 0.85042 0.89466 0.86183 0.87792 0.94909 0.89295 0.90575 0.94648 0.88849 0.91574 0.90223 0.89280 0.94119 0.93326 0.95147 0.93569 0.98046 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.44 71.23 0.74 -0.50 16 2 C 0.04 1.00 7.23 41.40 0.30 1.30 16 3 C -0.22 -8.24 10.74 22.41 0.24 -8.00 16 4 C -0.03 -1.08 6.84 42.46 0.29 -0.78 16 5 C 0.56 24.14 6.86 86.75 0.60 24.74 16 6 O -0.51 -26.92 10.14 -3.92 -0.04 -26.96 16 7 N -0.60 -20.80 2.95 -798.56 -2.36 -23.16 16 8 C 0.08 2.11 6.15 86.36 0.53 2.64 16 9 C -0.13 -3.04 6.08 30.67 0.19 -2.86 16 10 C -0.11 -2.30 5.88 30.62 0.18 -2.12 16 11 C -0.14 -3.93 4.64 30.67 0.14 -3.79 16 12 C 0.15 4.96 2.64 44.97 0.12 5.07 16 13 H 0.10 2.55 8.12 -2.39 -0.02 2.53 16 14 C -0.10 -4.15 1.57 -10.72 -0.02 -4.17 16 15 H 0.08 3.88 5.67 -24.48 -0.14 3.74 16 16 C -0.10 -3.39 4.97 30.62 0.15 -3.23 16 17 C -0.12 -4.38 6.08 30.68 0.19 -4.19 16 18 C 0.14 6.12 6.52 86.37 0.56 6.68 16 19 N -0.62 -33.76 2.77 -699.08 -1.94 -35.69 16 20 C -0.23 -14.75 10.04 84.03 0.84 -13.90 16 21 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 22 C -0.02 -1.15 5.25 84.86 0.45 -0.70 16 23 N -0.95 -65.31 13.97 21.65 0.30 -65.01 16 24 Si 0.94 54.46 24.35 68.60 1.67 56.13 16 25 H -0.30 -17.35 6.72 99.48 0.67 -16.68 16 26 H -0.31 -17.93 7.11 99.48 0.71 -17.22 16 27 H -0.27 -15.02 6.41 99.48 0.64 -14.38 16 28 C 0.14 7.00 2.05 86.36 0.18 7.18 16 29 N -0.26 -7.34 8.67 -48.17 -0.42 -7.75 16 30 N -0.36 -7.58 6.83 -47.93 -0.33 -7.91 16 31 H 0.46 4.73 8.96 -219.99 -1.97 2.76 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.13 5.80 8.06 -2.91 -0.02 5.78 16 36 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.12 3.26 4.07 -39.43 -0.16 3.10 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.03 1.29 5.88 -2.39 -0.01 1.27 16 43 H 0.09 2.26 7.04 -2.38 -0.02 2.24 16 44 H 0.07 1.96 6.94 -2.38 -0.02 1.94 16 45 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 46 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16 49 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 51 H 0.00 0.10 4.70 -2.38 -0.01 0.09 16 52 H 0.07 4.13 1.55 -6.20 -0.01 4.12 16 Total: -1.00 -89.85 376.89 1.16 -88.70 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -1.42 Total: 18.30 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.68 Total: 3.36 kcal Atomic # 7 Polarization: -134.79 SS G_CDS: -4.73 Total: -139.52 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.04 Total: -26.96 kcal Atomic # 14 Polarization: 54.46 SS G_CDS: 1.67 Total: 56.13 kcal Total: -89.85 1.16 -88.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053072751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.180 kcal (2) G-P(sol) polarization free energy of solvation -89.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds