Wall clock time and date at job start Wed Apr 1 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35364 * 126.38806 * 2 1 4 4 C 1.41504 * 105.50761 * 180.02562 * 3 2 1 5 5 C 1.47704 * 126.51880 * 179.97438 * 4 3 2 6 6 O 1.21569 * 119.99923 * 7.10671 * 5 4 3 7 7 N 1.34775 * 119.99925 * 187.10170 * 5 4 3 8 8 C 1.46926 * 120.63362 * 4.81655 * 7 5 4 9 9 C 1.53192 * 108.77602 * 126.38434 * 8 7 5 10 10 C 1.53039 * 109.30658 * 54.64130 * 9 8 7 11 11 C 1.53041 * 109.53936 * 298.62807 * 10 9 8 12 12 C 1.46930 * 120.63169 * 184.81205 * 7 5 4 13 13 H 1.09002 * 109.69930 * 113.75052 * 12 7 5 14 14 C 1.53002 * 109.58676 * 353.40343 * 12 7 5 15 15 H 1.09000 * 109.49770 * 51.75759 * 14 12 7 16 16 C 1.53049 * 109.49516 * 291.69809 * 14 12 7 17 17 C 1.53034 * 109.53697 * 178.65111 * 16 14 12 18 18 C 1.53196 * 109.31526 * 61.36273 * 17 16 14 19 19 N 1.46921 * 108.77267 * 305.36649 * 18 17 16 20 20 C 1.36940 * 120.63053 * 233.58176 * 19 18 17 21 21 H 1.08005 * 119.99423 * 30.50308 * 20 19 18 22 22 C 1.38808 * 120.00527 * 210.50363 * 20 19 18 23 23 N 1.31620 * 119.99765 * 9.58238 * 22 20 19 24 24 Si 1.86799 * 120.00251 * 189.57519 * 22 20 19 25 25 H 1.48500 * 109.46890 * 60.00605 * 24 22 20 26 26 H 1.48505 * 109.47034 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47349 * 300.00176 * 24 22 20 28 28 C 1.46922 * 118.74442 * 53.60656 * 19 18 17 29 29 N 1.31810 * 106.95951 * 0.26655 * 4 3 2 30 30 N 1.28470 * 110.07589 * 359.55678 * 29 4 3 31 31 H 0.96993 * 124.88527 * 180.16605 * 30 29 4 32 32 H 1.09008 * 109.47033 * 89.99776 * 1 2 3 33 33 H 1.09000 * 109.46976 * 209.99324 * 1 2 3 34 34 H 1.08994 * 109.47161 * 330.00150 * 1 2 3 35 35 H 1.08003 * 127.24257 * 0.02566 * 3 2 1 36 36 H 1.09005 * 109.58084 * 6.60188 * 8 7 5 37 37 H 1.08995 * 109.58907 * 246.17954 * 8 7 5 38 38 H 1.08998 * 109.50104 * 294.68880 * 9 8 7 39 39 H 1.09002 * 109.49562 * 174.58696 * 9 8 7 40 40 H 1.09007 * 109.45803 * 178.60877 * 10 9 8 41 41 H 1.08999 * 109.46563 * 58.65752 * 10 9 8 42 42 H 1.08994 * 109.49564 * 301.41762 * 11 10 9 43 43 H 1.09001 * 109.49660 * 181.32092 * 11 10 9 44 44 H 1.08997 * 109.45818 * 58.62767 * 16 14 12 45 45 H 1.09000 * 109.44175 * 298.66675 * 16 14 12 46 46 H 1.08999 * 109.49780 * 181.31589 * 17 16 14 47 47 H 1.09000 * 109.49952 * 301.41407 * 17 16 14 48 48 H 1.09003 * 109.58226 * 65.15066 * 18 17 16 49 49 H 1.08998 * 109.58776 * 185.57386 * 18 17 16 50 50 H 0.97000 * 120.00390 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.59085 * 186.59988 * 28 19 18 52 52 H 1.09007 * 109.58932 * 66.17376 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8257 2.5888 0.1287 7 7 6.0681 0.7684 -0.1462 8 6 6.1406 -0.6752 -0.4094 9 6 6.9911 -0.9059 -1.6624 10 6 8.3526 -0.2310 -1.4811 11 6 8.1569 1.2761 -1.3011 12 6 7.3196 1.5315 -0.0440 13 1 7.8752 1.2098 0.8369 14 6 7.0026 3.0242 0.0666 15 1 6.2794 3.1843 0.8662 16 6 6.4184 3.5218 -1.2576 17 6 6.0697 5.0070 -1.1372 18 6 7.3439 5.8042 -0.8410 19 7 7.9899 5.2375 0.3507 20 6 8.3092 6.0351 1.4171 21 1 7.7082 6.9042 1.6404 22 6 9.4053 5.7266 2.2110 23 7 10.2456 4.7856 1.8357 24 14 9.6877 6.6469 3.8118 25 1 8.5243 6.4431 4.7118 26 1 10.9166 6.1327 4.4682 27 1 9.8466 8.0959 3.5284 28 6 8.2873 3.7989 0.3764 29 7 3.5420 -0.7296 -0.0068 30 7 2.3081 -1.0871 -0.0007 31 1 1.9966 -2.0057 -0.0011 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8901 0.5137 34 1 -0.3633 0.8899 0.5138 35 1 2.0056 2.1260 0.0004 36 1 5.1367 -1.0678 -0.5718 37 1 6.5990 -1.1792 0.4414 38 1 6.4859 -0.4790 -2.5288 39 1 7.1328 -1.9760 -1.8140 40 1 8.9690 -0.4146 -2.3613 41 1 8.8468 -0.6409 -0.6003 42 1 7.6408 1.6823 -2.1708 43 1 9.1284 1.7590 -1.1954 44 1 5.5174 2.9551 -1.4927 45 1 7.1517 3.3841 -2.0522 46 1 5.6321 5.3550 -2.0729 47 1 5.3553 5.1485 -0.3262 48 1 8.0227 5.7373 -1.6913 49 1 7.0877 6.8475 -0.6565 50 1 11.0118 4.5702 2.3903 51 1 8.6536 3.5191 1.3642 52 1 9.0430 3.5685 -0.3746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053072755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:25 Heat of formation + Delta-G solvation = 97.826658 kcal Electronic energy + Delta-G solvation = -32839.461331 eV Core-core repulsion = 28842.575295 eV Total energy + Delta-G solvation = -3996.886036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.83756 -40.42233 -37.14602 -36.79208 -33.61741 -32.92924 -32.42655 -32.00769 -31.44794 -29.63459 -28.35658 -27.33567 -25.46576 -25.03933 -23.74926 -23.00478 -21.87714 -21.42116 -20.62098 -20.43557 -18.87845 -18.15576 -17.85101 -16.49622 -16.28491 -16.07152 -15.38890 -15.01234 -14.69743 -14.36243 -14.03156 -13.97699 -13.92244 -13.62219 -13.42489 -13.31565 -13.28094 -13.06571 -12.78338 -12.67208 -12.40199 -12.28643 -11.92776 -11.76589 -11.48675 -11.19733 -10.86788 -10.85883 -10.65862 -10.55498 -10.46001 -10.30239 -10.08752 -9.98498 -9.85820 -9.60033 -9.33610 -9.15438 -9.08932 -8.99336 -8.51968 -8.28329 -7.98585 -6.37129 -5.59429 -3.05733 1.53376 2.01729 2.63321 3.29707 3.48810 3.52601 3.54994 3.61405 4.31789 4.45635 4.63199 4.68783 4.96476 5.07665 5.10500 5.11868 5.23682 5.40049 5.43705 5.51104 5.53027 5.59299 5.62169 5.73520 5.79791 5.88486 5.97763 6.02935 6.06525 6.13176 6.13777 6.22348 6.29631 6.34879 6.39325 6.51351 6.59165 6.63974 6.79114 6.81640 6.85898 6.95046 7.00791 7.16355 7.20001 7.39169 7.45635 7.64800 7.78431 7.85698 7.93471 7.99621 8.59753 8.67799 9.42261 10.05393 10.64146 11.47106 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003490 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.182531 B = 8020.780689 C = 8932.492793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.012 3.988 3 C -0.179 4.179 4 C 0.006 3.994 5 C 0.580 3.420 6 O -0.490 6.490 7 N -0.591 5.591 8 C 0.084 3.916 9 C -0.131 4.131 10 C -0.121 4.121 11 C -0.133 4.133 12 C 0.157 3.843 13 H 0.071 0.929 14 C -0.112 4.112 15 H 0.102 0.898 16 C -0.087 4.087 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.590 5.590 20 C -0.242 4.242 21 H 0.061 0.939 22 C 0.000 4.000 23 N -0.908 5.908 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.176 3.824 29 N -0.266 5.266 30 N -0.390 5.390 31 H 0.440 0.560 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.059 0.941 48 H 0.011 0.989 49 H 0.046 0.954 50 H 0.251 0.749 51 H 0.086 0.914 52 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.764 -17.267 -7.232 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.155 4.155 5 C 0.366 3.634 6 O -0.363 6.363 7 N -0.324 5.324 8 C -0.040 4.040 9 C -0.169 4.169 10 C -0.159 4.159 11 C -0.172 4.172 12 C 0.054 3.946 13 H 0.089 0.911 14 C -0.132 4.132 15 H 0.120 0.880 16 C -0.124 4.124 17 C -0.165 4.165 18 C 0.020 3.980 19 N -0.312 5.312 20 C -0.372 4.372 21 H 0.079 0.921 22 C -0.198 4.198 23 N -0.554 5.554 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.050 3.950 29 N -0.101 5.101 30 N -0.103 5.103 31 H 0.284 0.716 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.180 0.820 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.029 0.971 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.104 0.896 52 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -15.954 -17.534 -7.059 24.734 hybrid contribution -0.285 0.421 0.806 0.953 sum -16.239 -17.112 -6.253 24.406 Atomic orbital electron populations 1.20347 0.86712 1.03934 1.03280 1.21434 0.95268 0.87284 1.07422 1.21553 0.90576 0.99783 1.08787 1.22379 0.95812 0.89427 1.07904 1.17020 0.81346 0.86325 0.78750 1.90948 1.85436 1.12360 1.47543 1.47919 1.05544 1.08969 1.69983 1.22436 1.03841 0.80829 0.96864 1.21894 0.96592 1.00181 0.98261 1.21559 0.96438 0.96295 1.01563 1.22096 1.01143 0.95219 0.98695 1.21416 0.82698 0.93270 0.97199 0.91131 1.22483 1.00931 0.89891 0.99856 0.88020 1.21647 0.98580 0.95988 0.96178 1.21903 0.99070 0.96234 0.99274 1.20926 0.91958 0.95449 0.89698 1.43916 1.69898 1.03510 1.13860 1.19168 1.06233 1.07693 1.04137 0.92105 1.25097 0.95502 0.99194 0.99963 1.69963 1.14166 1.33525 1.37698 0.86364 0.77048 0.79477 0.83822 1.21135 1.21730 1.21034 1.20920 0.90298 0.82448 1.01333 1.73353 1.00620 1.15207 1.20945 1.43484 1.03337 1.09348 1.54179 0.71576 0.90361 0.91236 0.89472 0.82037 0.85850 0.92141 0.92026 0.91486 0.92226 0.92007 0.91205 0.90002 0.92441 0.94790 0.94426 0.92193 0.97083 0.93518 0.93846 0.89607 0.97008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.44 36.00 0.38 -0.01 16 2 C 0.01 0.10 7.23 -82.21 -0.59 -0.49 16 3 C -0.18 -2.17 10.74 -39.36 -0.42 -2.59 16 4 C 0.01 0.08 6.85 -82.77 -0.57 -0.49 16 5 C 0.58 9.85 6.71 -12.39 -0.08 9.77 16 6 O -0.49 -9.72 10.03 5.31 0.05 -9.67 16 7 N -0.59 -9.35 2.95 -166.38 -0.49 -9.84 16 8 C 0.08 1.06 6.16 -3.71 -0.02 1.04 16 9 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 10 C -0.12 -1.53 5.88 -26.69 -0.16 -1.68 16 11 C -0.13 -2.11 4.65 -26.62 -0.12 -2.24 16 12 C 0.16 2.79 2.64 -67.60 -0.18 2.61 16 13 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 14 C -0.11 -2.38 1.57 -90.50 -0.14 -2.52 16 15 H 0.10 2.47 5.74 -53.00 -0.30 2.17 16 16 C -0.09 -1.75 3.46 -26.69 -0.09 -1.84 16 17 C -0.13 -2.63 6.01 -26.61 -0.16 -2.79 16 18 C 0.15 3.45 6.52 -3.71 -0.02 3.42 16 19 N -0.59 -16.01 2.99 -172.32 -0.52 -16.53 16 20 C -0.24 -7.08 9.60 -15.06 -0.14 -7.23 16 21 H 0.06 1.76 7.85 -52.48 -0.41 1.34 16 22 C 0.00 0.00 5.08 -17.43 -0.09 -0.09 16 23 N -0.91 -27.20 10.92 55.49 0.61 -26.59 16 24 Si 0.90 22.73 29.56 -169.99 -5.03 17.71 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.18 4.46 4.45 -3.72 -0.02 4.44 16 29 N -0.27 -3.10 8.66 33.42 0.29 -2.81 16 30 N -0.39 -3.21 6.83 33.50 0.23 -2.98 16 31 H 0.44 1.87 8.96 -190.45 -1.71 0.16 16 32 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 36 H 0.12 1.49 4.05 -83.26 -0.34 1.15 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.14 6.02 -51.93 -0.31 0.83 16 43 H 0.08 1.41 6.87 -51.93 -0.36 1.06 16 44 H 0.06 1.14 5.20 -51.91 -0.27 0.87 16 45 H 0.03 0.67 6.29 -51.93 -0.33 0.35 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 50 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.09 2.43 5.99 -51.93 -0.31 2.12 16 52 H 0.01 0.31 6.65 -51.92 -0.35 -0.03 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -34.08 382.77 -11.41 -45.48 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -9.72 Total: 1.80 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.60 Total: -2.35 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.12 Total: -58.74 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.05 Total: -9.67 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.08 -11.41 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053072755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.310 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds