Wall clock time and date at job start Wed Apr 1 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35364 * 126.38806 * 2 1 4 4 C 1.41504 * 105.50761 * 180.02562 * 3 2 1 5 5 C 1.47704 * 126.51880 * 179.97438 * 4 3 2 6 6 O 1.21569 * 119.99923 * 7.10671 * 5 4 3 7 7 N 1.34775 * 119.99925 * 187.10170 * 5 4 3 8 8 C 1.46926 * 120.63362 * 4.81655 * 7 5 4 9 9 C 1.53192 * 108.77602 * 126.38434 * 8 7 5 10 10 C 1.53039 * 109.30658 * 54.64130 * 9 8 7 11 11 C 1.53041 * 109.53936 * 298.62807 * 10 9 8 12 12 C 1.46930 * 120.63169 * 184.81205 * 7 5 4 13 13 H 1.09002 * 109.69930 * 113.75052 * 12 7 5 14 14 C 1.53002 * 109.58676 * 353.40343 * 12 7 5 15 15 H 1.09000 * 109.49770 * 51.75759 * 14 12 7 16 16 C 1.53049 * 109.49516 * 291.69809 * 14 12 7 17 17 C 1.53034 * 109.53697 * 178.65111 * 16 14 12 18 18 C 1.53196 * 109.31526 * 61.36273 * 17 16 14 19 19 N 1.46921 * 108.77267 * 305.36649 * 18 17 16 20 20 C 1.36940 * 120.63053 * 233.58176 * 19 18 17 21 21 H 1.08005 * 119.99423 * 30.50308 * 20 19 18 22 22 C 1.38808 * 120.00527 * 210.50363 * 20 19 18 23 23 N 1.31620 * 119.99765 * 9.58238 * 22 20 19 24 24 Si 1.86799 * 120.00251 * 189.57519 * 22 20 19 25 25 H 1.48500 * 109.46890 * 60.00605 * 24 22 20 26 26 H 1.48505 * 109.47034 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47349 * 300.00176 * 24 22 20 28 28 C 1.46922 * 118.74442 * 53.60656 * 19 18 17 29 29 N 1.31810 * 106.95951 * 0.26655 * 4 3 2 30 30 N 1.28470 * 110.07589 * 359.55678 * 29 4 3 31 31 H 0.96993 * 124.88527 * 180.16605 * 30 29 4 32 32 H 1.09008 * 109.47033 * 89.99776 * 1 2 3 33 33 H 1.09000 * 109.46976 * 209.99324 * 1 2 3 34 34 H 1.08994 * 109.47161 * 330.00150 * 1 2 3 35 35 H 1.08003 * 127.24257 * 0.02566 * 3 2 1 36 36 H 1.09005 * 109.58084 * 6.60188 * 8 7 5 37 37 H 1.08995 * 109.58907 * 246.17954 * 8 7 5 38 38 H 1.08998 * 109.50104 * 294.68880 * 9 8 7 39 39 H 1.09002 * 109.49562 * 174.58696 * 9 8 7 40 40 H 1.09007 * 109.45803 * 178.60877 * 10 9 8 41 41 H 1.08999 * 109.46563 * 58.65752 * 10 9 8 42 42 H 1.08994 * 109.49564 * 301.41762 * 11 10 9 43 43 H 1.09001 * 109.49660 * 181.32092 * 11 10 9 44 44 H 1.08997 * 109.45818 * 58.62767 * 16 14 12 45 45 H 1.09000 * 109.44175 * 298.66675 * 16 14 12 46 46 H 1.08999 * 109.49780 * 181.31589 * 17 16 14 47 47 H 1.09000 * 109.49952 * 301.41407 * 17 16 14 48 48 H 1.09003 * 109.58226 * 65.15066 * 18 17 16 49 49 H 1.08998 * 109.58776 * 185.57386 * 18 17 16 50 50 H 0.97000 * 120.00390 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.59085 * 186.59988 * 28 19 18 52 52 H 1.09007 * 109.58932 * 66.17376 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8257 2.5888 0.1287 7 7 6.0681 0.7684 -0.1462 8 6 6.1406 -0.6752 -0.4094 9 6 6.9911 -0.9059 -1.6624 10 6 8.3526 -0.2310 -1.4811 11 6 8.1569 1.2761 -1.3011 12 6 7.3196 1.5315 -0.0440 13 1 7.8752 1.2098 0.8369 14 6 7.0026 3.0242 0.0666 15 1 6.2794 3.1843 0.8662 16 6 6.4184 3.5218 -1.2576 17 6 6.0697 5.0070 -1.1372 18 6 7.3439 5.8042 -0.8410 19 7 7.9899 5.2375 0.3507 20 6 8.3092 6.0351 1.4171 21 1 7.7082 6.9042 1.6404 22 6 9.4053 5.7266 2.2110 23 7 10.2456 4.7856 1.8357 24 14 9.6877 6.6469 3.8118 25 1 8.5243 6.4431 4.7118 26 1 10.9166 6.1327 4.4682 27 1 9.8466 8.0959 3.5284 28 6 8.2873 3.7989 0.3764 29 7 3.5420 -0.7296 -0.0068 30 7 2.3081 -1.0871 -0.0007 31 1 1.9966 -2.0057 -0.0011 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8901 0.5137 34 1 -0.3633 0.8899 0.5138 35 1 2.0056 2.1260 0.0004 36 1 5.1367 -1.0678 -0.5718 37 1 6.5990 -1.1792 0.4414 38 1 6.4859 -0.4790 -2.5288 39 1 7.1328 -1.9760 -1.8140 40 1 8.9690 -0.4146 -2.3613 41 1 8.8468 -0.6409 -0.6003 42 1 7.6408 1.6823 -2.1708 43 1 9.1284 1.7590 -1.1954 44 1 5.5174 2.9551 -1.4927 45 1 7.1517 3.3841 -2.0522 46 1 5.6321 5.3550 -2.0729 47 1 5.3553 5.1485 -0.3262 48 1 8.0227 5.7373 -1.6913 49 1 7.0877 6.8475 -0.6565 50 1 11.0118 4.5702 2.3903 51 1 8.6536 3.5191 1.3642 52 1 9.0430 3.5685 -0.3746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053072755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:24 Heat of formation + Delta-G solvation = 76.653819 kcal Electronic energy + Delta-G solvation = -32840.379454 eV Core-core repulsion = 28842.575295 eV Total energy + Delta-G solvation = -3997.804159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.69208 -41.79448 -38.76983 -38.22706 -35.24095 -34.21654 -33.55690 -33.31080 -32.51171 -31.67091 -29.86307 -27.95198 -27.18833 -26.70946 -24.92204 -24.40309 -23.76713 -22.37222 -22.09246 -21.60272 -20.50978 -19.41795 -18.75926 -18.58961 -17.49918 -17.05317 -16.74120 -16.72621 -16.18762 -15.73630 -15.54132 -15.23862 -15.15066 -15.08362 -14.75180 -14.50375 -14.41108 -14.20436 -14.02550 -13.86004 -13.75487 -13.62962 -13.25869 -13.10892 -12.94385 -12.80976 -12.61128 -12.44883 -12.29810 -12.19943 -12.03676 -11.86933 -11.75343 -11.58071 -11.29508 -11.08942 -10.93951 -10.83465 -10.51984 -10.24403 -10.00009 -9.86542 -9.36199 -8.54882 -7.81515 -5.33087 0.55476 1.16426 1.43869 1.47613 1.53975 1.82968 2.21839 2.41979 2.51560 3.29202 3.35440 3.65937 3.83308 3.91740 3.92283 4.03280 4.10451 4.14615 4.29168 4.31958 4.38129 4.43919 4.51619 4.60206 4.64651 4.69233 4.78476 4.82294 4.82880 4.94691 4.95370 4.98699 5.02774 5.09269 5.09816 5.14521 5.15483 5.18910 5.23787 5.28263 5.39190 5.41920 5.49971 5.55413 5.58391 5.60230 5.70416 5.80232 6.03710 6.19525 6.44897 6.54511 6.92003 7.19275 7.31553 7.90503 8.43984 9.22011 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003490 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.182531 B = 8020.780689 C = 8932.492793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 C -0.211 4.211 4 C -0.024 4.024 5 C 0.573 3.427 6 O -0.532 6.532 7 N -0.590 5.590 8 C 0.080 3.920 9 C -0.123 4.123 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.161 3.839 13 H 0.055 0.945 14 C -0.094 4.094 15 H 0.071 0.929 16 C -0.074 4.074 17 C -0.115 4.115 18 C 0.144 3.856 19 N -0.611 5.611 20 C -0.265 4.265 21 H 0.058 0.942 22 C -0.050 4.050 23 N -0.933 5.933 24 Si 0.970 3.030 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.274 1.274 28 C 0.190 3.810 29 N -0.267 5.267 30 N -0.368 5.368 31 H 0.461 0.539 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.136 0.864 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.037 0.963 46 H 0.068 0.932 47 H 0.040 0.960 48 H 0.012 0.988 49 H 0.047 0.953 50 H 0.250 0.750 51 H 0.049 0.951 52 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.954 -19.750 -8.068 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.239 4.239 4 C -0.183 4.183 5 C 0.360 3.640 6 O -0.408 6.408 7 N -0.322 5.322 8 C -0.042 4.042 9 C -0.161 4.161 10 C -0.154 4.154 11 C -0.164 4.164 12 C 0.057 3.943 13 H 0.073 0.927 14 C -0.114 4.114 15 H 0.089 0.911 16 C -0.111 4.111 17 C -0.154 4.154 18 C 0.018 3.982 19 N -0.334 5.334 20 C -0.396 4.396 21 H 0.076 0.924 22 C -0.245 4.245 23 N -0.579 5.579 24 Si 0.798 3.202 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.200 1.200 28 C 0.064 3.936 29 N -0.103 5.103 30 N -0.084 5.084 31 H 0.309 0.691 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.030 0.970 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -18.163 -20.067 -7.919 28.201 hybrid contribution 0.295 1.133 1.074 1.589 sum -17.868 -18.934 -6.845 26.919 Atomic orbital electron populations 1.20533 0.83382 1.05426 1.04786 1.21870 0.96869 0.85956 1.04179 1.21674 0.90539 1.00732 1.10926 1.21953 0.95077 0.90379 1.10935 1.17479 0.82415 0.86320 0.77752 1.90911 1.86200 1.14161 1.49547 1.47970 1.04441 1.10215 1.69618 1.22691 1.05058 0.78591 0.97852 1.21868 0.95064 1.01976 0.97191 1.21540 0.97838 0.93447 1.02535 1.21986 0.99343 0.97983 0.97137 1.21134 0.84074 0.91271 0.97818 0.92674 1.22136 0.97618 0.92070 0.99608 0.91103 1.21527 0.98776 0.95492 0.95285 1.21779 0.97220 0.96443 0.99969 1.21043 0.92796 0.95866 0.88481 1.44216 1.70342 1.04189 1.14644 1.19470 1.06588 1.08118 1.05382 0.92382 1.25883 0.95236 1.00188 1.03193 1.70140 1.14397 1.34647 1.38745 0.85308 0.76800 0.78532 0.79581 1.20785 1.21424 1.19963 1.20677 0.91816 0.82470 0.98651 1.73186 1.02317 1.13853 1.20985 1.43562 1.02342 1.10541 1.51999 0.69057 0.88687 0.88573 0.89179 0.82823 0.84716 0.91632 0.92265 0.88210 0.90387 0.91777 0.91547 0.92133 0.91608 0.94448 0.91388 0.94080 0.96977 0.93472 0.94123 0.93276 0.98563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.44 71.24 0.74 0.29 16 2 C 0.04 0.56 7.23 41.40 0.30 0.86 16 3 C -0.21 -4.98 10.74 22.41 0.24 -4.74 16 4 C -0.02 -0.68 6.85 42.46 0.29 -0.39 16 5 C 0.57 20.02 6.71 86.75 0.58 20.60 16 6 O -0.53 -22.24 10.03 -3.93 -0.04 -22.28 16 7 N -0.59 -18.94 2.95 -798.57 -2.35 -21.29 16 8 C 0.08 1.92 6.16 86.36 0.53 2.45 16 9 C -0.12 -2.49 6.08 30.67 0.19 -2.30 16 10 C -0.12 -2.76 5.88 30.62 0.18 -2.58 16 11 C -0.13 -4.08 4.65 30.67 0.14 -3.93 16 12 C 0.16 5.98 2.64 44.97 0.12 6.10 16 13 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 14 C -0.09 -4.25 1.57 -10.71 -0.02 -4.27 16 15 H 0.07 3.70 5.74 -20.08 -0.12 3.58 16 16 C -0.07 -3.05 3.46 30.62 0.11 -2.95 16 17 C -0.12 -4.92 6.01 30.67 0.18 -4.74 16 18 C 0.14 6.99 6.52 86.36 0.56 7.55 16 19 N -0.61 -34.77 2.99 -699.10 -2.09 -36.87 16 20 C -0.27 -16.13 9.60 84.03 0.81 -15.32 16 21 H 0.06 3.47 7.85 -2.91 -0.02 3.45 16 22 C -0.05 -2.99 5.08 84.86 0.43 -2.56 16 23 N -0.93 -58.13 10.92 21.65 0.24 -57.89 16 24 Si 0.97 47.96 29.56 68.60 2.03 49.99 16 25 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 28 C 0.19 10.22 4.45 86.36 0.38 10.60 16 29 N -0.27 -5.70 8.66 -48.18 -0.42 -6.11 16 30 N -0.37 -4.90 6.83 -47.93 -0.33 -5.23 16 31 H 0.46 2.03 8.96 -220.00 -1.97 0.06 16 32 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.14 2.97 4.05 -42.92 -0.17 2.80 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 2.17 6.02 -2.39 -0.01 2.16 16 43 H 0.06 2.19 6.87 -2.39 -0.02 2.18 16 44 H 0.07 2.67 5.20 -2.87 -0.01 2.65 16 45 H 0.04 1.51 6.29 -2.39 -0.02 1.49 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.04 1.91 7.98 -2.39 -0.02 1.89 16 48 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 50 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 51 H 0.05 2.98 5.99 -2.39 -0.01 2.97 16 52 H 0.00 -0.20 6.65 -2.38 -0.02 -0.22 16 Total: -1.00 -78.69 382.77 1.51 -77.18 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -1.30 Total: 17.84 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.77 Total: 4.66 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -4.95 Total: -127.40 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.04 Total: -22.28 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -78.69 1.51 -77.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053072755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.837 kcal (2) G-P(sol) polarization free energy of solvation -78.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds