Wall clock time and date at job start Wed Apr 1 2020 03:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.90262 * 2 1 4 4 N 1.40085 * 108.20829 * 180.25533 * 3 2 1 5 5 H 0.96993 * 126.04093 * 179.73610 * 4 3 2 6 6 C 1.34954 * 107.92218 * 359.72511 * 4 3 2 7 7 C 1.50701 * 126.12623 * 179.97438 * 6 4 3 8 8 C 1.35318 * 107.74431 * 359.97438 * 6 4 3 9 9 C 1.50699 * 126.03537 * 180.02562 * 8 6 4 10 10 H 1.09001 * 109.47296 * 6.89706 * 9 8 6 11 11 C 1.52997 * 109.47438 * 246.89224 * 9 8 6 12 12 C 1.53004 * 109.46965 * 126.89425 * 9 8 6 13 13 C 1.50701 * 109.47313 * 184.99976 * 12 9 8 14 14 O 1.21280 * 119.99932 * 359.97438 * 13 12 9 15 15 N 1.34777 * 119.99690 * 180.02562 * 13 12 9 16 16 C 1.47896 * 134.33588 * 179.97438 * 15 13 12 17 17 C 1.52376 * 85.58677 * 156.51589 * 16 15 13 18 18 C 1.47884 * 134.34618 * 359.97438 * 15 13 12 19 19 C 1.53660 * 116.38899 * 264.17233 * 17 16 15 20 20 C 1.54596 * 102.73113 * 264.50999 * 19 17 16 21 21 N 1.47140 * 107.36824 * 339.24419 * 20 19 17 22 22 C 1.36935 * 125.58856 * 179.09261 * 21 20 19 23 23 H 1.08000 * 120.00148 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00188 * 359.97438 * 22 21 20 25 25 N 1.31625 * 119.99871 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00098 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47198 * 59.99707 * 26 24 22 28 28 H 1.48507 * 109.46954 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47115 * 299.99636 * 26 24 22 30 30 C 1.47725 * 108.82067 * 359.07476 * 21 20 19 31 31 H 1.08995 * 109.47657 * 266.43369 * 1 2 3 32 32 H 1.09004 * 109.46829 * 26.43037 * 1 2 3 33 33 H 1.09003 * 109.47127 * 146.42574 * 1 2 3 34 34 H 1.08993 * 109.47189 * 270.02471 * 7 6 4 35 35 H 1.09005 * 109.46758 * 30.02259 * 7 6 4 36 36 H 1.09000 * 109.46916 * 150.02058 * 7 6 4 37 37 H 1.08997 * 109.47593 * 183.28602 * 11 9 8 38 38 H 1.09000 * 109.47014 * 303.28412 * 11 9 8 39 39 H 1.08995 * 109.47108 * 63.28196 * 11 9 8 40 40 H 1.09003 * 109.47253 * 64.99961 * 12 9 8 41 41 H 1.09007 * 109.47003 * 305.00200 * 12 9 8 42 42 H 1.09002 * 113.85169 * 42.35173 * 16 15 13 43 43 H 1.08998 * 113.96856 * 270.69237 * 16 15 13 44 44 H 1.08997 * 113.85483 * 89.32257 * 18 15 13 45 45 H 1.09004 * 113.85433 * 317.65466 * 18 15 13 46 46 H 1.09004 * 110.75639 * 146.20186 * 19 17 16 47 47 H 1.08999 * 110.76059 * 22.82307 * 19 17 16 48 48 H 1.08997 * 109.86819 * 219.80014 * 20 19 17 49 49 H 1.09003 * 109.86903 * 98.68943 * 20 19 17 50 50 H 0.96996 * 120.00164 * 179.97438 * 25 24 22 51 51 H 1.09006 * 110.39506 * 141.25025 * 30 21 20 52 52 H 1.08998 * 110.40246 * 263.54007 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 1 4.3908 1.2077 -0.0109 6 6 3.6142 -0.7155 -0.0033 7 6 4.8349 -1.5992 -0.0083 8 6 2.3271 -1.1331 0.0046 9 6 1.8598 -2.5658 0.0105 10 1 2.7178 -3.2273 0.1309 11 6 1.1563 -2.8783 -1.3117 12 6 0.8846 -2.7793 1.1700 13 6 0.5124 -4.2374 1.2513 14 8 0.9806 -5.0278 0.4596 15 7 -0.3416 -4.6627 2.2033 16 6 -0.9116 -5.9779 2.5676 17 6 -1.1103 -5.3761 3.9533 18 6 -1.0815 -4.0003 3.2990 19 6 -0.0105 -5.6640 4.9871 20 6 -0.5697 -6.8884 5.7473 21 7 -2.0243 -6.9153 5.5274 22 6 -2.8874 -7.8575 6.0197 23 1 -3.9430 -7.7894 5.8016 24 6 -2.4057 -8.9003 6.7991 25 7 -1.1192 -8.9837 7.0645 26 14 -3.5832 -10.1852 7.4712 27 1 -4.2684 -10.8668 6.3437 28 1 -2.8245 -11.1845 8.2657 29 1 -4.5928 -9.5261 8.3382 30 6 -2.4009 -5.7590 4.6887 31 1 -0.3634 -0.0639 1.0256 32 1 -0.3633 0.9203 -0.4574 33 1 -0.3633 -0.8562 -0.5683 34 1 5.1238 -1.8138 -1.0371 35 1 5.6538 -1.0903 0.5004 36 1 4.6101 -2.5323 0.5083 37 1 0.7673 -3.8962 -1.2846 38 1 0.3337 -2.1788 -1.4597 39 1 1.8668 -2.7827 -2.1327 40 1 -0.0132 -2.1839 1.0040 41 1 1.3568 -2.4722 2.1032 42 1 -0.1895 -6.7940 2.5409 43 1 -1.8425 -6.2151 2.0525 44 1 -2.0644 -3.6306 3.0067 45 1 -0.4929 -3.2640 3.8463 46 1 0.1179 -4.8166 5.6606 47 1 0.9289 -5.9119 4.4929 48 1 -0.3578 -6.7917 6.8121 49 1 -0.1195 -7.8024 5.3598 50 1 -0.7826 -9.7121 7.6094 51 1 -3.1747 -6.0431 3.9754 52 1 -2.7445 -4.9334 5.3119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072867574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:46 Heat of formation + Delta-G solvation = 89.157581 kcal Electronic energy + Delta-G solvation = -30850.440546 eV Core-core repulsion = 26853.178591 eV Total energy + Delta-G solvation = -3997.261955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.72017 -40.49543 -38.53981 -35.72863 -35.22850 -33.60298 -32.20191 -30.88862 -29.78196 -28.89502 -28.34150 -27.60101 -27.05560 -26.01721 -25.43331 -23.62636 -22.37644 -20.43720 -20.28483 -19.38548 -19.05659 -18.29694 -17.26940 -16.88804 -16.52830 -15.91412 -15.63446 -15.44449 -14.90691 -14.59008 -14.32946 -14.07824 -13.92793 -13.76584 -13.68969 -13.38310 -13.13794 -13.00190 -12.80357 -12.70281 -12.48657 -12.30858 -12.30512 -12.05147 -11.88485 -11.79444 -11.47393 -11.29091 -11.06743 -11.05332 -10.92298 -10.70050 -10.44680 -10.35379 -10.14958 -10.11769 -9.85585 -9.68550 -9.48962 -9.36200 -8.59927 -8.59004 -8.45455 -6.83837 -5.71145 -3.04875 1.59368 2.44757 2.58491 2.79534 3.00118 3.40934 3.45305 3.46526 4.32901 4.35272 4.47655 4.56615 4.67187 4.70806 4.82681 4.97844 5.02238 5.04401 5.14316 5.17352 5.28629 5.35182 5.37365 5.43263 5.48625 5.49122 5.54403 5.57686 5.58951 5.68402 5.71622 5.78779 5.84202 5.88194 5.93302 6.00858 6.09708 6.21807 6.22874 6.23712 6.30543 6.47080 6.51901 6.52760 6.66969 6.70607 7.02444 7.45322 7.55125 7.61748 7.82327 7.91420 8.25189 8.33302 9.21556 9.81772 10.47252 11.40393 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.002047 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.010606 B =13674.185893 C =13814.257762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.088 3.912 3 N -0.298 5.298 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.090 3.910 7 C -0.096 4.096 8 C -0.225 4.225 9 C 0.007 3.993 10 H 0.082 0.918 11 C -0.149 4.149 12 C -0.130 4.130 13 C 0.532 3.468 14 O -0.545 6.545 15 N -0.641 5.641 16 C 0.131 3.869 17 C -0.104 4.104 18 C 0.114 3.886 19 C -0.119 4.119 20 C 0.179 3.821 21 N -0.605 5.605 22 C -0.229 4.229 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.922 5.922 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 C 0.150 3.850 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.043 0.957 49 H 0.046 0.954 50 H 0.253 0.747 51 H 0.041 0.959 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 18.927 -14.307 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 N -0.121 5.121 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.038 4.038 7 C -0.154 4.154 8 C -0.236 4.236 9 C -0.013 4.013 10 H 0.101 0.899 11 C -0.206 4.206 12 C -0.170 4.170 13 C 0.322 3.678 14 O -0.424 6.424 15 N -0.377 5.377 16 C 0.009 3.991 17 C -0.106 4.106 18 C -0.009 4.009 19 C -0.157 4.157 20 C 0.055 3.945 21 N -0.331 5.331 22 C -0.357 4.357 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 C 0.024 3.976 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.730 19.634 -14.742 26.058 hybrid contribution -0.112 -1.076 0.494 1.189 sum 8.618 18.558 -14.248 24.933 Atomic orbital electron populations 1.20410 0.86959 1.03543 1.03221 1.22161 0.96837 0.90136 0.98773 1.77272 0.86504 1.22373 1.25996 1.46123 1.07258 1.04797 1.60547 0.72011 1.20895 0.96996 0.84870 1.01031 1.20509 0.92721 0.98634 1.03564 1.19699 0.91070 0.96045 1.16781 1.19127 0.97787 0.90134 0.94300 0.89940 1.21982 1.00020 1.02825 0.95817 1.21757 1.01341 0.93188 1.00747 1.20344 0.78261 0.90483 0.78676 1.90656 1.54583 1.56912 1.40236 1.50298 1.44021 1.12174 1.31173 1.22912 0.97831 0.86664 0.91673 1.22462 0.99753 0.93909 0.94491 1.23068 0.95875 0.96754 0.85222 1.22525 0.96262 1.00592 0.96348 1.21210 0.83319 0.92682 0.97321 1.44525 1.03617 1.26255 1.58721 1.18994 0.89508 1.01740 1.25449 0.90467 1.24801 0.96195 0.98941 1.00490 1.69950 1.11309 1.33178 1.42510 0.86203 0.79694 0.81212 0.78657 1.21171 1.21655 1.21198 1.21226 0.92754 0.91044 0.92611 0.90220 0.90903 0.89850 0.90047 0.91100 0.89175 0.90417 0.93120 0.93135 0.88860 0.89260 0.89992 0.89830 0.89574 0.90143 0.91947 0.92070 0.93863 0.93550 0.93702 0.94050 0.95728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 8.66 36.01 0.31 -0.34 16 2 C 0.09 0.91 7.04 -82.41 -0.58 0.33 16 3 N -0.30 -3.33 12.70 33.67 0.43 -2.91 16 4 N -0.48 -4.16 7.36 33.48 0.25 -3.92 16 5 H 0.44 2.42 8.96 -182.62 -1.64 0.78 16 6 C 0.09 0.79 7.21 -82.26 -0.59 0.20 16 7 C -0.10 -0.57 10.12 36.01 0.36 -0.20 16 8 C -0.22 -2.24 4.81 -105.05 -0.51 -2.75 16 9 C 0.01 0.07 2.18 -91.77 -0.20 -0.13 16 10 H 0.08 0.91 6.57 -51.93 -0.34 0.57 16 11 C -0.15 -1.57 8.88 37.16 0.33 -1.24 16 12 C -0.13 -1.36 4.62 -27.88 -0.13 -1.48 16 13 C 0.53 7.42 7.75 -10.98 -0.09 7.33 16 14 O -0.55 -9.36 14.70 5.56 0.08 -9.27 16 15 N -0.64 -8.85 3.62 -186.90 -0.68 -9.53 16 16 C 0.13 2.05 8.14 -3.60 -0.03 2.03 16 17 C -0.10 -1.64 0.99 -154.85 -0.15 -1.79 16 18 C 0.11 1.35 7.99 -3.60 -0.03 1.32 16 19 C -0.12 -2.09 6.33 -25.55 -0.16 -2.25 16 20 C 0.18 4.19 5.39 -2.85 -0.02 4.17 16 21 N -0.60 -14.72 3.41 -170.50 -0.58 -15.30 16 22 C -0.23 -6.18 10.28 -15.06 -0.15 -6.34 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 25 N -0.92 -26.71 10.30 55.49 0.57 -26.14 16 26 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 C 0.15 2.82 6.66 -3.17 -0.02 2.80 16 31 H 0.08 0.54 7.81 -51.93 -0.41 0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.60 5.11 -51.93 -0.27 0.33 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.57 7.05 -51.93 -0.37 0.20 16 37 H 0.08 0.99 5.90 -51.93 -0.31 0.68 16 38 H 0.05 0.47 5.65 -51.93 -0.29 0.18 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.82 5.63 -51.93 -0.29 0.53 16 41 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 42 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 43 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 48 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 49 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 50 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 51 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 52 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 404.66 15.07 6.10 6.10 Total: -1.00 -33.65 404.66 -10.30 -43.95 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -9.70 Total: -1.08 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.75 Total: 1.32 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.01 Total: -57.79 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.65 -10.30 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072867574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.108 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds