Wall clock time and date at job start Wed Apr 1 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30840 * 125.89945 * 2 1 4 4 N 1.40084 * 108.20193 * 180.26564 * 3 2 1 5 5 H 0.97002 * 126.03303 * 179.74229 * 4 3 2 6 6 C 1.34943 * 107.92854 * 359.71148 * 4 3 2 7 7 C 1.50702 * 126.12897 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74442 * 0.02562 * 6 4 3 9 9 C 1.50706 * 126.03551 * 179.97438 * 8 6 4 10 10 H 1.08996 * 109.47449 * 6.30900 * 9 8 6 11 11 C 1.52998 * 109.47075 * 246.30292 * 9 8 6 12 12 C 1.53004 * 109.46703 * 126.30774 * 9 8 6 13 13 C 1.50701 * 109.46953 * 185.00085 * 12 9 8 14 14 O 1.21281 * 120.00109 * 359.97438 * 13 12 9 15 15 N 1.34777 * 119.99936 * 180.02562 * 13 12 9 16 16 C 1.47408 * 125.58800 * 359.96489 * 15 13 12 17 17 C 1.54861 * 104.81695 * 204.43905 * 16 15 13 18 18 C 1.55173 * 101.73530 * 322.77478 * 17 16 15 19 19 H 1.09000 * 113.25504 * 158.95680 * 18 17 16 20 20 C 1.53748 * 108.30525 * 285.38653 * 18 17 16 21 21 N 1.46590 * 108.11294 * 125.22744 * 20 18 17 22 22 C 1.36929 * 125.31539 * 181.28495 * 21 20 18 23 23 H 1.07997 * 120.00279 * 9.01012 * 22 21 20 24 24 C 1.38811 * 119.99941 * 188.73824 * 22 21 20 25 25 N 1.31619 * 120.00129 * 12.34824 * 24 22 21 26 26 Si 1.86801 * 119.99955 * 192.35143 * 24 22 21 27 27 H 1.48504 * 109.47298 * 94.84486 * 26 24 22 28 28 H 1.48510 * 109.46945 * 214.84406 * 26 24 22 29 29 H 1.48500 * 109.47273 * 334.84208 * 26 24 22 30 30 C 1.46713 * 109.37267 * 1.54438 * 21 20 18 31 31 C 1.48849 * 125.33754 * 180.02562 * 15 13 12 32 32 H 1.08998 * 111.95196 * 56.52942 * 31 15 13 33 33 H 1.09000 * 109.46940 * 266.42800 * 1 2 3 34 34 H 1.08995 * 109.47293 * 26.43092 * 1 2 3 35 35 H 1.08999 * 109.47038 * 146.42909 * 1 2 3 36 36 H 1.08999 * 109.46989 * 269.98069 * 7 6 4 37 37 H 1.08995 * 109.46898 * 29.97945 * 7 6 4 38 38 H 1.08997 * 109.47095 * 149.97696 * 7 6 4 39 39 H 1.09001 * 109.47075 * 52.62144 * 11 9 8 40 40 H 1.09004 * 109.46844 * 172.61700 * 11 9 8 41 41 H 1.09005 * 109.47347 * 292.61840 * 11 9 8 42 42 H 1.08996 * 109.47532 * 64.99651 * 12 9 8 43 43 H 1.09001 * 109.47017 * 304.99784 * 12 9 8 44 44 H 1.09000 * 110.36729 * 85.61092 * 16 15 13 45 45 H 1.09001 * 110.46301 * 323.32535 * 16 15 13 46 46 H 1.08998 * 110.97834 * 204.65983 * 17 16 15 47 47 H 1.09007 * 110.97439 * 80.88053 * 17 16 15 48 48 H 1.09000 * 109.74685 * 5.55348 * 20 18 17 49 49 H 1.08999 * 109.73296 * 244.88828 * 20 18 17 50 50 H 0.97007 * 120.00089 * 180.02562 * 25 24 22 51 51 H 1.09007 * 109.98911 * 101.13867 * 30 21 20 52 52 H 1.08995 * 109.98906 * 222.44635 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6340 -0.0062 5 1 4.3908 1.2079 -0.0111 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5990 -0.0075 8 6 2.3271 -1.1330 0.0037 9 6 1.8599 -2.5658 0.0084 10 1 2.7189 -3.2277 0.1181 11 6 1.1441 -2.8731 -1.3084 12 6 0.8955 -2.7839 1.1761 13 6 0.5242 -4.2423 1.2552 14 8 0.9850 -5.0296 0.4560 15 7 -0.3209 -4.6714 2.2134 16 6 -0.9511 -3.8256 3.2431 17 6 -1.2742 -4.7938 4.4077 18 6 -1.6973 -6.0764 3.6436 19 1 -1.6196 -6.9815 4.2459 20 6 -3.1044 -5.8522 3.0659 21 7 -3.0507 -6.1069 1.6233 22 6 -4.1052 -5.9854 0.7583 23 1 -5.0311 -5.5427 1.0943 24 6 -3.9822 -6.4263 -0.5522 25 7 -2.9567 -7.1738 -0.9016 26 14 -5.2719 -5.9584 -1.8200 27 1 -4.8264 -4.7480 -2.5560 28 1 -5.4554 -7.0797 -2.7763 29 1 -6.5591 -5.6758 -1.1356 30 6 -1.6922 -6.5181 1.2520 31 6 -0.7663 -6.0793 2.4010 32 1 0.0757 -6.7591 2.5308 33 1 -0.3633 -0.0640 1.0257 34 1 -0.3633 0.9202 -0.4574 35 1 -0.3633 -0.8562 -0.5683 36 1 5.1241 -1.8144 -1.0361 37 1 5.6537 -1.0899 0.5010 38 1 4.6101 -2.5317 0.5097 39 1 1.7853 -2.5936 -2.1444 40 1 0.9223 -3.9391 -1.3612 41 1 0.2147 -2.3057 -1.3578 42 1 -0.0037 -2.1878 1.0209 43 1 1.3765 -2.4805 2.1060 44 1 -1.8667 -3.3771 2.8574 45 1 -0.2602 -3.0504 3.5746 46 1 -2.0949 -4.4130 5.0155 47 1 -0.3905 -4.9775 5.0189 48 1 -3.4174 -4.8239 3.2470 49 1 -3.8086 -6.5394 3.5351 50 1 -2.8706 -7.4816 -1.8175 51 1 -1.6510 -7.6004 1.1292 52 1 -1.3940 -6.0262 0.3261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075965741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:53 Heat of formation + Delta-G solvation = 58.704036 kcal Electronic energy + Delta-G solvation = -32226.972341 eV Core-core repulsion = 28228.389821 eV Total energy + Delta-G solvation = -3998.582520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.53988 -39.97986 -38.02197 -35.09616 -34.65062 -33.42921 -32.13606 -30.77534 -30.64252 -29.06150 -28.16411 -27.46245 -26.86888 -26.10810 -24.60697 -22.88665 -21.95115 -20.59079 -20.24242 -19.50536 -19.07670 -18.33078 -17.11582 -16.89076 -16.44212 -15.91180 -15.31701 -14.94721 -14.82499 -14.50103 -13.95640 -13.81705 -13.67603 -13.53176 -13.30216 -13.15565 -12.95297 -12.80788 -12.64313 -12.62835 -12.40119 -12.21190 -12.03661 -11.91953 -11.75744 -11.54295 -11.22126 -11.09412 -11.00727 -10.85693 -10.81799 -10.69091 -10.47243 -10.24856 -10.17616 -10.05657 -9.86436 -9.66755 -9.31140 -9.11853 -8.49531 -8.39839 -8.04112 -6.72949 -5.67265 -2.99961 1.75142 2.63978 2.74269 3.19170 3.43917 3.47980 3.49125 3.51572 4.50551 4.53847 4.56934 4.77796 4.83535 4.85077 5.01952 5.14476 5.19374 5.22482 5.26994 5.32256 5.50618 5.51244 5.55729 5.58251 5.59146 5.62509 5.68476 5.70502 5.80718 5.82766 5.86657 5.90879 5.97499 6.05402 6.06601 6.12480 6.29061 6.31202 6.38502 6.48823 6.54508 6.60967 6.62937 6.70421 6.84499 6.91499 7.18202 7.61231 7.62320 7.64873 7.89432 8.11519 8.34652 8.75519 9.26509 9.89308 10.54214 11.44582 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.003446 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.188702 B = 8123.753085 C = 9160.693011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.091 3.909 3 N -0.300 5.300 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.086 3.914 7 C -0.094 4.094 8 C -0.221 4.221 9 C 0.008 3.992 10 H 0.081 0.919 11 C -0.149 4.149 12 C -0.130 4.130 13 C 0.527 3.473 14 O -0.534 6.534 15 N -0.605 5.605 16 C 0.105 3.895 17 C -0.123 4.123 18 C -0.112 4.112 19 H 0.094 0.906 20 C 0.142 3.858 21 N -0.597 5.597 22 C -0.235 4.235 23 H 0.075 0.925 24 C -0.002 4.002 25 N -0.909 5.909 26 Si 0.905 3.095 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.281 1.281 30 C 0.173 3.827 31 C 0.117 3.883 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.024 0.976 49 H 0.020 0.980 50 H 0.253 0.747 51 H 0.038 0.962 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.647 12.539 8.090 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 N -0.124 5.124 4 N -0.190 5.190 5 H 0.278 0.722 6 C -0.042 4.042 7 C -0.153 4.153 8 C -0.232 4.232 9 C -0.012 4.012 10 H 0.099 0.901 11 C -0.207 4.207 12 C -0.170 4.170 13 C 0.316 3.684 14 O -0.411 6.411 15 N -0.339 5.339 16 C -0.019 4.019 17 C -0.162 4.162 18 C -0.131 4.131 19 H 0.112 0.888 20 C 0.016 3.984 21 N -0.324 5.324 22 C -0.363 4.363 23 H 0.093 0.907 24 C -0.200 4.200 25 N -0.555 5.555 26 Si 0.736 3.264 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 C 0.047 3.953 31 C 0.014 3.986 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.042 0.958 49 H 0.037 0.963 50 H 0.063 0.937 51 H 0.056 0.944 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.913 13.353 7.379 20.648 hybrid contribution -0.300 -0.180 -0.627 0.718 sum 13.613 13.173 6.751 20.110 Atomic orbital electron populations 1.20432 0.86811 1.03794 1.03267 1.22193 0.96882 0.90097 0.98434 1.77266 0.86459 1.22379 1.26261 1.46102 1.07236 1.04754 1.60860 0.72179 1.20862 0.96955 0.84844 1.01522 1.20486 0.92645 0.98573 1.03546 1.19783 0.91007 0.96276 1.16137 1.19136 0.97736 0.89747 0.94616 0.90083 1.21977 0.99459 1.03887 0.95328 1.21792 1.01296 0.93816 1.00121 1.20170 0.78158 0.90352 0.79764 1.90674 1.54129 1.56886 1.39414 1.48875 1.45245 1.09359 1.30469 1.22229 0.97794 0.93593 0.88263 1.22781 1.01263 0.95556 0.96551 1.23047 0.96659 0.97708 0.95711 0.88792 1.21168 0.92847 0.97622 0.86747 1.44163 1.06927 1.80231 1.01043 1.18940 0.92557 1.33995 0.90815 0.90712 1.24791 0.98155 0.99160 0.97873 1.69988 1.30828 1.37045 1.17670 0.86207 0.80730 0.77709 0.81753 1.21627 1.21812 1.20649 1.21261 0.82081 0.97928 0.93988 1.23071 0.96220 0.82091 0.97233 0.90222 0.90282 0.90965 0.89523 0.90090 0.91299 0.89233 0.93439 0.89877 0.93027 0.88892 0.89802 0.91093 0.91472 0.90105 0.91248 0.95799 0.96252 0.93677 0.94415 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 8.68 36.01 0.31 -0.63 16 2 C 0.09 1.16 7.06 -82.41 -0.58 0.58 16 3 N -0.30 -3.93 12.70 33.67 0.43 -3.50 16 4 N -0.48 -4.94 7.36 33.48 0.25 -4.70 16 5 H 0.43 3.00 8.96 -182.61 -1.64 1.37 16 6 C 0.09 0.90 7.21 -82.26 -0.59 0.31 16 7 C -0.09 -0.69 10.11 36.01 0.36 -0.32 16 8 C -0.22 -2.73 4.80 -105.05 -0.50 -3.23 16 9 C 0.01 0.10 2.19 -91.77 -0.20 -0.10 16 10 H 0.08 1.10 6.57 -51.93 -0.34 0.75 16 11 C -0.15 -2.26 8.70 37.16 0.32 -1.94 16 12 C -0.13 -1.76 3.88 -27.88 -0.11 -1.87 16 13 C 0.53 9.31 7.30 -10.99 -0.08 9.22 16 14 O -0.53 -11.32 13.77 5.56 0.08 -11.24 16 15 N -0.60 -10.41 3.09 -160.55 -0.50 -10.91 16 16 C 0.10 1.42 6.23 -2.56 -0.02 1.40 16 17 C -0.12 -1.52 6.31 -24.60 -0.16 -1.67 16 18 C -0.11 -1.80 4.19 -87.88 -0.37 -2.17 16 19 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 20 C 0.14 2.83 6.41 -3.60 -0.02 2.81 16 21 N -0.60 -15.11 3.38 -171.95 -0.58 -15.69 16 22 C -0.23 -6.56 10.20 -15.06 -0.15 -6.71 16 23 H 0.08 2.03 7.86 -52.49 -0.41 1.61 16 24 C 0.00 -0.06 5.38 -17.43 -0.09 -0.16 16 25 N -0.91 -27.39 10.67 55.49 0.59 -26.80 16 26 Si 0.91 22.40 29.57 -169.99 -5.03 17.37 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 C 0.17 4.30 4.97 -3.43 -0.02 4.28 16 31 C 0.12 2.24 3.75 -64.93 -0.24 1.99 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.08 0.78 7.81 -51.93 -0.41 0.37 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.01 5.13 -51.93 -0.27 0.74 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.68 7.06 -51.93 -0.37 0.31 16 39 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 40 H 0.08 1.53 6.12 -51.93 -0.32 1.21 16 41 H 0.05 0.77 5.75 -51.93 -0.30 0.47 16 42 H 0.09 1.21 5.68 -51.93 -0.30 0.92 16 43 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 44 H 0.07 1.05 7.46 -51.93 -0.39 0.66 16 45 H 0.07 0.72 7.46 -51.93 -0.39 0.33 16 46 H 0.08 0.86 7.97 -51.93 -0.41 0.45 16 47 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 48 H 0.02 0.46 6.76 -51.93 -0.35 0.11 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 51 H 0.04 1.05 7.80 -51.92 -0.40 0.64 16 52 H 0.07 2.02 6.47 -51.93 -0.34 1.69 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -34.96 395.37 -10.49 -45.45 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -9.54 Total: 2.26 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.14 Total: 1.79 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.19 Total: -61.59 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.96 -10.49 -45.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075965741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.151 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds