Wall clock time and date at job start Wed Apr 1 2020 03:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30835 * 125.89396 * 2 1 4 4 N 1.40090 * 108.20404 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.04074 * 180.02562 * 4 3 2 6 6 C 1.34943 * 107.92284 * 359.75348 * 4 3 2 7 7 C 1.50701 * 126.12930 * 180.23854 * 6 4 3 8 8 C 1.35319 * 107.74857 * 0.39343 * 6 4 3 9 9 C 1.50701 * 126.04263 * 179.87178 * 8 6 4 10 10 H 1.09007 * 109.46713 * 5.50953 * 9 8 6 11 11 C 1.53000 * 109.47063 * 125.50319 * 9 8 6 12 12 C 1.52988 * 109.47316 * 245.50794 * 9 8 6 13 13 C 1.50701 * 109.47485 * 173.34809 * 12 9 8 14 14 O 1.21280 * 119.99600 * 359.97438 * 13 12 9 15 15 N 1.34776 * 120.00572 * 180.02562 * 13 12 9 16 16 C 1.47399 * 125.58453 * 0.02562 * 15 13 12 17 17 C 1.54855 * 104.81102 * 204.60935 * 16 15 13 18 18 C 1.55121 * 101.77598 * 322.81778 * 17 16 15 19 19 H 1.09001 * 113.46021 * 159.23970 * 18 17 16 20 20 C 1.54038 * 108.25886 * 286.08635 * 18 17 16 21 21 N 1.46709 * 106.82889 * 135.80925 * 20 18 17 22 22 C 1.36933 * 125.32472 * 161.84118 * 21 20 18 23 23 H 1.07998 * 120.00031 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00165 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99807 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00121 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47173 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47044 * 119.99861 * 26 24 22 29 29 H 1.48497 * 109.47327 * 239.99861 * 26 24 22 30 30 C 1.46634 * 109.35286 * 341.82205 * 21 20 18 31 31 C 1.46727 * 125.59546 * 179.71717 * 15 13 12 32 32 H 1.08999 * 111.32745 * 56.11538 * 31 15 13 33 33 H 1.09000 * 109.47478 * 274.94421 * 1 2 3 34 34 H 1.08996 * 109.46893 * 34.94779 * 1 2 3 35 35 H 1.09003 * 109.46521 * 154.94559 * 1 2 3 36 36 H 1.09000 * 109.47659 * 270.17972 * 7 6 4 37 37 H 1.09002 * 109.47299 * 30.18069 * 7 6 4 38 38 H 1.08996 * 109.47627 * 150.17825 * 7 6 4 39 39 H 1.09002 * 109.47548 * 300.00043 * 11 9 8 40 40 H 1.08996 * 109.47297 * 60.00131 * 11 9 8 41 41 H 1.08997 * 109.47149 * 180.02562 * 11 9 8 42 42 H 1.09007 * 109.47122 * 293.34102 * 12 9 8 43 43 H 1.08994 * 109.47680 * 53.34203 * 12 9 8 44 44 H 1.09002 * 110.37341 * 323.44602 * 16 15 13 45 45 H 1.09004 * 110.37161 * 85.77752 * 16 15 13 46 46 H 1.09005 * 110.96467 * 80.93950 * 17 16 15 47 47 H 1.09002 * 110.96626 * 204.69450 * 17 16 15 48 48 H 1.09004 * 109.99018 * 255.14658 * 20 18 17 49 49 H 1.08995 * 109.98881 * 16.42844 * 20 18 17 50 50 H 0.96997 * 120.00351 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.75712 * 120.92805 * 30 21 20 52 52 H 1.08997 * 109.75909 * 241.63023 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6143 -0.7152 0.0065 7 6 4.8350 -1.5988 0.0142 8 6 2.3272 -1.1330 0.0007 9 6 1.8600 -2.5657 0.0014 10 1 2.7194 -3.2280 0.1060 11 6 0.8993 -2.7883 1.1712 12 6 1.1403 -2.8681 -1.3143 13 6 0.8173 -4.3385 -1.3839 14 8 1.1324 -5.0723 -0.4712 15 7 0.1794 -4.8382 -2.4609 16 6 -0.2571 -4.0624 -3.6357 17 6 -1.4270 -4.8794 -4.2372 18 6 -0.9440 -6.3363 -4.0128 19 1 -1.7509 -7.0689 -4.0328 20 6 0.1787 -6.6337 -5.0246 21 7 1.2410 -7.3279 -4.2883 22 6 2.2419 -8.0709 -4.8552 23 1 2.2913 -8.1807 -5.9285 24 6 3.1931 -8.6829 -4.0505 25 7 3.1326 -8.5494 -2.7424 26 14 4.5580 -9.6969 -4.8238 27 1 4.4029 -9.6912 -6.3006 28 1 5.8744 -9.1123 -4.4625 29 1 4.4821 -11.0928 -4.3229 30 6 1.0636 -7.1014 -2.8505 31 6 -0.1887 -6.2446 -2.6590 32 1 -0.8024 -6.6134 -1.8371 33 1 -0.3634 0.0886 1.0238 34 1 -0.3633 0.8423 -0.5887 35 1 -0.3632 -0.9310 -0.4352 36 1 5.1347 -1.8137 -1.0115 37 1 5.6486 -1.0899 0.5313 38 1 4.6051 -2.5318 0.5286 39 1 1.4121 -2.5729 2.1086 40 1 0.0400 -2.1260 1.0667 41 1 0.5617 -3.8247 1.1720 42 1 0.2170 -2.2907 -1.3645 43 1 1.7839 -2.5975 -2.1512 44 1 -0.6016 -3.0741 -3.3312 45 1 0.5557 -3.9762 -4.3569 46 1 -2.3544 -4.6883 -3.6971 47 1 -1.5454 -4.6669 -5.2997 48 1 -0.1990 -7.2719 -5.8235 49 1 0.5611 -5.7021 -5.4414 50 1 3.7974 -8.9767 -2.1800 51 1 0.9411 -8.0564 -2.3394 52 1 1.9319 -6.5781 -2.4501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075965742.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:55 Heat of formation + Delta-G solvation = 37.318431 kcal Electronic energy + Delta-G solvation = -31997.723932 eV Core-core repulsion = 27998.214063 eV Total energy + Delta-G solvation = -3999.509869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.43506 -41.52125 -39.48923 -36.51468 -36.20720 -34.24730 -33.91961 -32.40482 -31.59909 -30.65993 -29.03110 -28.79891 -27.67335 -27.61239 -26.53477 -24.13002 -23.15903 -22.34133 -21.10925 -20.93771 -20.09051 -19.70757 -18.87617 -18.12184 -17.78490 -17.04613 -16.89237 -16.44004 -16.11799 -15.72360 -15.49538 -15.12236 -14.91718 -14.60528 -14.58165 -14.25319 -14.09083 -13.97901 -13.92325 -13.72863 -13.51568 -13.37289 -13.31499 -13.10677 -12.95692 -12.92465 -12.81573 -12.75478 -12.38091 -12.23694 -12.11591 -12.06297 -11.86052 -11.84103 -11.78061 -11.53701 -11.36074 -11.17165 -10.76651 -10.54466 -10.16977 -9.48549 -9.31314 -8.87704 -7.82362 -5.20776 0.89023 1.42748 1.44503 1.55009 1.70828 1.80988 1.96726 2.21280 2.48706 3.34020 3.44674 3.63159 3.69993 3.74708 3.84661 3.86492 4.00855 4.09115 4.19662 4.24026 4.31964 4.37038 4.47861 4.51684 4.58153 4.59428 4.64743 4.68616 4.75433 4.79263 4.80812 4.85739 4.91732 4.96721 4.99607 5.04255 5.13305 5.17042 5.18086 5.23261 5.31102 5.36095 5.43688 5.44613 5.47099 5.50028 5.70335 5.80594 5.84764 6.20766 6.43657 6.75675 6.76368 7.09882 7.37903 7.80971 8.42768 9.25798 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.003233 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.353932 B = 8658.882182 C =10035.923084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.085 3.915 3 N -0.325 5.325 4 N -0.472 5.472 5 H 0.448 0.552 6 C 0.093 3.907 7 C -0.097 4.097 8 C -0.242 4.242 9 C 0.011 3.989 10 H 0.057 0.943 11 C -0.143 4.143 12 C -0.112 4.112 13 C 0.516 3.484 14 O -0.578 6.578 15 N -0.608 5.608 16 C 0.094 3.906 17 C -0.106 4.106 18 C -0.099 4.099 19 H 0.115 0.885 20 C 0.135 3.865 21 N -0.624 5.624 22 C -0.241 4.241 23 H 0.087 0.913 24 C -0.070 4.070 25 N -0.951 5.951 26 Si 0.978 3.022 27 H -0.260 1.260 28 H -0.295 1.295 29 H -0.293 1.293 30 C 0.196 3.804 31 C 0.120 3.880 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.122 0.878 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.042 0.958 49 H 0.030 0.970 50 H 0.242 0.758 51 H -0.002 1.002 52 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 20.298 1.897 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 N -0.149 5.149 4 N -0.182 5.182 5 H 0.294 0.706 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.254 4.254 9 C -0.009 4.009 10 H 0.075 0.925 11 C -0.200 4.200 12 C -0.151 4.151 13 C 0.307 3.693 14 O -0.458 6.458 15 N -0.341 5.341 16 C -0.028 4.028 17 C -0.144 4.144 18 C -0.119 4.119 19 H 0.133 0.867 20 C 0.010 3.990 21 N -0.351 5.351 22 C -0.370 4.370 23 H 0.105 0.895 24 C -0.263 4.263 25 N -0.600 5.600 26 Si 0.806 3.194 27 H -0.184 1.184 28 H -0.223 1.223 29 H -0.221 1.221 30 C 0.070 3.930 31 C 0.015 3.985 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.128 0.872 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.052 0.948 51 H 0.016 0.984 52 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -7.501 21.131 2.470 22.558 hybrid contribution 1.957 -1.783 0.085 2.648 sum -5.544 19.348 2.554 20.288 Atomic orbital electron populations 1.20495 0.85166 1.04216 1.04006 1.22544 0.98056 0.89541 0.97981 1.77193 0.87318 1.23061 1.27361 1.46124 1.07292 1.04746 1.60036 0.70577 1.21197 0.97496 0.85258 0.99664 1.20567 0.92733 0.98053 1.04158 1.19701 0.91811 0.95542 1.18308 1.18978 0.97943 0.90230 0.93720 0.92487 1.21909 0.99335 1.01848 0.96902 1.21714 1.03509 0.90013 0.99914 1.21037 0.76291 0.91603 0.80408 1.90683 1.53771 1.62303 1.39019 1.48552 1.57763 1.08579 1.19207 1.22609 0.97153 0.96557 0.86489 1.22791 0.97553 0.90699 1.03308 1.23137 0.96954 0.99979 0.91809 0.86729 1.21586 0.87880 0.95211 0.94321 1.44562 1.29760 1.58508 1.02251 1.19513 1.02909 1.22589 0.91990 0.89521 1.25733 1.02029 1.02566 0.95972 1.70305 1.37059 1.48889 1.03708 0.85014 0.78477 0.77636 0.78256 1.18373 1.22255 1.22052 1.20650 0.93306 0.94449 0.84592 1.22150 0.95628 0.82558 0.98213 0.91072 0.89475 0.89836 0.89180 0.89651 0.88684 0.90273 0.93301 0.90628 0.93263 0.86052 0.89075 0.87071 0.92461 0.88135 0.87224 0.94025 0.95211 0.94847 0.98410 0.97969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 8.80 71.24 0.63 -0.59 16 2 C 0.09 1.86 7.05 43.10 0.30 2.16 16 3 N -0.33 -7.66 12.70 -47.38 -0.60 -8.26 16 4 N -0.47 -9.24 7.36 -48.00 -0.35 -9.59 16 5 H 0.45 5.84 8.96 -213.33 -1.91 3.93 16 6 C 0.09 1.98 7.21 41.41 0.30 2.28 16 7 C -0.10 -1.71 10.10 71.24 0.72 -0.99 16 8 C -0.24 -5.69 4.80 -20.14 -0.10 -5.79 16 9 C 0.01 0.30 2.13 -11.54 -0.02 0.28 16 10 H 0.06 1.81 6.51 -2.38 -0.02 1.79 16 11 C -0.14 -3.63 8.73 71.98 0.63 -3.00 16 12 C -0.11 -2.83 4.00 29.84 0.12 -2.71 16 13 C 0.52 18.31 7.12 87.66 0.62 18.94 16 14 O -0.58 -26.16 13.94 -3.03 -0.04 -26.20 16 15 N -0.61 -20.32 2.99 -787.16 -2.35 -22.68 16 16 C 0.09 2.15 6.22 86.84 0.54 2.69 16 17 C -0.11 -2.03 6.35 31.95 0.20 -1.83 16 18 C -0.10 -2.99 4.35 -8.93 -0.04 -3.03 16 19 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 20 C 0.13 5.18 6.45 86.69 0.56 5.73 16 21 N -0.62 -32.82 3.38 -699.22 -2.36 -35.18 16 22 C -0.24 -13.84 10.25 84.03 0.86 -12.98 16 23 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 24 C -0.07 -4.18 5.48 84.86 0.47 -3.71 16 25 N -0.95 -61.34 10.24 21.65 0.22 -61.12 16 26 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 29 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 30 C 0.20 10.52 4.91 86.33 0.42 10.95 16 31 C 0.12 4.69 3.55 45.72 0.16 4.85 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.18 4.59 -2.39 -0.01 1.17 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.62 7.07 -2.39 -0.02 1.60 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.51 5.45 -2.39 -0.01 1.49 16 41 H 0.05 1.54 6.10 -2.39 -0.01 1.52 16 42 H 0.12 2.22 5.48 -2.38 -0.01 2.21 16 43 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.11 1.67 7.45 -2.39 -0.02 1.65 16 45 H 0.06 1.48 7.18 -2.38 -0.02 1.46 16 46 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.11 1.60 8.08 -2.39 -0.02 1.58 16 48 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 49 H 0.03 1.10 6.52 -2.39 -0.02 1.08 16 50 H 0.24 15.33 8.31 -92.71 -0.77 14.55 16 51 H 0.00 -0.14 7.32 -2.39 -0.02 -0.16 16 52 H 0.00 0.13 6.66 -2.39 -0.02 0.12 16 Total: -1.00 -84.62 393.86 1.95 -82.67 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.97 Total: 17.67 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.38 Total: 13.24 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -5.45 Total: -136.83 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.04 Total: -26.20 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -84.62 1.95 -82.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075965742.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.993 kcal (2) G-P(sol) polarization free energy of solvation -84.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds