Wall clock time and date at job start Wed Apr 1 2020 03:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30842 * 125.89501 * 2 1 4 4 N 1.40084 * 108.20007 * 180.25239 * 3 2 1 5 5 H 0.97007 * 126.03799 * 179.73664 * 4 3 2 6 6 C 1.34950 * 107.93042 * 359.72334 * 4 3 2 7 7 C 1.50698 * 126.12909 * 180.02562 * 6 4 3 8 8 C 1.35323 * 107.74005 * 359.97438 * 6 4 3 9 9 C 1.50695 * 126.03621 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47485 * 89.99309 * 9 8 6 11 11 H 1.08994 * 109.47405 * 304.99785 * 10 9 8 12 12 C 1.52996 * 109.47068 * 65.00106 * 10 9 8 13 13 C 1.50702 * 109.47159 * 184.99752 * 10 9 8 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 10 9 15 15 N 1.34777 * 119.99928 * 179.72352 * 13 10 9 16 16 C 1.47402 * 125.59099 * 0.30793 * 15 13 10 17 17 C 1.54859 * 104.81007 * 204.60649 * 16 15 13 18 18 C 1.55121 * 101.77693 * 322.81087 * 17 16 15 19 19 H 1.08993 * 113.46388 * 159.24382 * 18 17 16 20 20 C 1.54044 * 108.25770 * 286.09568 * 18 17 16 21 21 N 1.46706 * 106.83201 * 135.80918 * 20 18 17 22 22 C 1.36934 * 125.32678 * 161.79781 * 21 20 18 23 23 H 1.08003 * 119.99422 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00231 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99994 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99990 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47243 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47108 * 120.00072 * 26 24 22 29 29 H 1.48495 * 109.47062 * 239.99585 * 26 24 22 30 30 C 1.46637 * 109.35214 * 341.81848 * 21 20 18 31 31 C 1.46739 * 125.58921 * 179.97438 * 15 13 10 32 32 H 1.08997 * 111.32687 * 56.12919 * 31 15 13 33 33 H 1.08997 * 109.47264 * 270.20992 * 1 2 3 34 34 H 1.09004 * 109.47268 * 30.21554 * 1 2 3 35 35 H 1.09004 * 109.46887 * 150.21051 * 1 2 3 36 36 H 1.09005 * 109.46886 * 269.97291 * 7 6 4 37 37 H 1.08997 * 109.47253 * 29.97350 * 7 6 4 38 38 H 1.09001 * 109.46998 * 149.97283 * 7 6 4 39 39 H 1.09009 * 109.47299 * 329.99292 * 9 8 6 40 40 H 1.09003 * 109.47200 * 209.99748 * 9 8 6 41 41 H 1.09001 * 109.47551 * 179.97438 * 12 10 9 42 42 H 1.09003 * 109.47307 * 300.00352 * 12 10 9 43 43 H 1.09002 * 109.47575 * 59.99595 * 12 10 9 44 44 H 1.09005 * 110.36729 * 323.43579 * 16 15 13 45 45 H 1.08991 * 110.37480 * 85.65820 * 16 15 13 46 46 H 1.08997 * 110.96842 * 80.93526 * 17 16 15 47 47 H 1.09004 * 110.96073 * 204.65346 * 17 16 15 48 48 H 1.09004 * 109.98477 * 255.14857 * 20 18 17 49 49 H 1.08993 * 109.99179 * 16.41909 * 20 18 17 50 50 H 0.96994 * 119.99927 * 180.02562 * 25 24 22 51 51 H 1.08994 * 109.75768 * 120.92674 * 30 21 20 52 52 H 1.08999 * 109.75458 * 241.63282 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6143 -0.7153 -0.0032 7 6 4.8351 -1.5988 -0.0070 8 6 2.3271 -1.1329 0.0047 9 6 1.8600 -2.5656 0.0107 10 6 1.7097 -3.0471 1.4552 11 1 2.6476 -2.8937 1.9888 12 6 0.5960 -2.2554 2.1434 13 6 1.3618 -4.5134 1.4623 14 8 1.2459 -5.1143 0.4152 15 7 1.1854 -5.1584 2.6325 16 6 1.2958 -4.5521 3.9715 17 6 1.6405 -5.7321 4.9132 18 6 0.7937 -6.8805 4.3047 19 1 1.1469 -7.8738 4.5815 20 6 -0.6837 -6.6335 4.6641 21 7 -1.4645 -6.8845 3.4477 22 6 -2.8124 -7.1225 3.4070 23 1 -3.3862 -7.1357 4.3219 24 6 -3.4413 -7.3466 2.1901 25 7 -2.7420 -7.3300 1.0750 26 14 -5.2799 -7.6719 2.1347 27 1 -5.8303 -7.6384 3.5136 28 1 -5.9426 -6.6289 1.3112 29 1 -5.5285 -9.0076 1.5354 30 6 -0.5757 -6.8413 2.2822 31 6 0.8452 -6.5780 2.7823 32 1 1.5705 -7.2150 2.2762 33 1 -0.3634 0.0038 1.0276 34 1 -0.3634 0.8881 -0.5172 35 1 -0.3633 -0.8919 -0.5106 36 1 5.1244 -1.8143 -1.0356 37 1 5.6537 -1.0897 0.5016 38 1 4.6101 -2.5316 0.5102 39 1 2.5907 -3.1883 -0.5056 40 1 0.8984 -2.6364 -0.4978 41 1 0.4886 -2.5987 3.1723 42 1 0.8475 -1.1948 2.1382 43 1 -0.3420 -2.4088 1.6098 44 1 2.0932 -3.8090 3.9868 45 1 0.3487 -4.0972 4.2613 46 1 2.7040 -5.9670 4.8710 47 1 1.3306 -5.5180 5.9361 48 1 -0.9944 -7.3174 5.4540 49 1 -0.8207 -5.6022 4.9893 50 1 -3.1815 -7.4863 0.2246 51 1 -0.6123 -7.7948 1.7553 52 1 -0.8846 -6.0384 1.6129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076588834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:44 Heat of formation + Delta-G solvation = 60.420716 kcal Electronic energy + Delta-G solvation = -32182.736886 eV Core-core repulsion = 28184.228807 eV Total energy + Delta-G solvation = -3998.508079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54355 -40.22124 -38.02418 -35.04057 -34.68780 -33.48333 -32.23148 -31.15549 -30.81765 -28.94581 -28.44089 -27.36904 -26.40089 -25.85069 -24.62742 -23.62035 -21.81764 -20.60499 -20.18104 -19.62945 -19.09541 -18.26023 -17.55010 -16.90199 -16.52404 -15.72576 -15.32646 -15.05821 -14.64812 -14.47742 -14.06492 -13.81231 -13.63592 -13.62206 -13.35765 -13.25685 -13.02343 -12.79392 -12.62625 -12.55475 -12.29245 -12.26765 -12.05837 -11.94398 -11.86027 -11.61564 -11.47068 -11.16055 -11.00824 -10.88675 -10.84430 -10.65362 -10.47897 -10.40014 -10.17954 -10.07535 -9.80828 -9.64917 -9.33366 -9.18259 -8.53872 -8.39914 -8.06596 -6.75097 -5.62138 -2.98091 1.72438 2.60335 2.72630 3.14781 3.43921 3.48570 3.49293 3.52000 4.48384 4.53688 4.56562 4.72486 4.82273 4.82978 4.99369 5.05869 5.15251 5.18226 5.22643 5.28024 5.47057 5.49919 5.53604 5.55126 5.59135 5.60090 5.61986 5.67510 5.79125 5.82254 5.91167 5.92226 5.96454 5.98477 6.01893 6.05578 6.19640 6.25769 6.32346 6.40311 6.43570 6.55639 6.62795 6.64912 6.69908 6.92536 7.16198 7.60393 7.62719 7.73208 7.96154 8.09541 8.35442 8.71696 9.29422 9.90483 10.54075 11.47481 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.003176 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.419577 B = 8812.807106 C = 9950.523498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.090 3.910 3 N -0.300 5.300 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.086 3.914 7 C -0.094 4.094 8 C -0.223 4.223 9 C -0.022 4.022 10 C -0.095 4.095 11 H 0.086 0.914 12 C -0.150 4.150 13 C 0.529 3.471 14 O -0.532 6.532 15 N -0.602 5.602 16 C 0.102 3.898 17 C -0.126 4.126 18 C -0.111 4.111 19 H 0.096 0.904 20 C 0.142 3.858 21 N -0.602 5.602 22 C -0.233 4.233 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.914 5.914 26 Si 0.909 3.091 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.177 3.823 31 C 0.116 3.884 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.033 0.967 49 H 0.018 0.982 50 H 0.252 0.748 51 H 0.050 0.950 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.577 13.042 3.160 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 N -0.124 5.124 4 N -0.189 5.189 5 H 0.278 0.722 6 C -0.042 4.042 7 C -0.153 4.153 8 C -0.234 4.234 9 C -0.061 4.061 10 C -0.116 4.116 11 H 0.104 0.896 12 C -0.208 4.208 13 C 0.317 3.683 14 O -0.408 6.408 15 N -0.336 5.336 16 C -0.021 4.021 17 C -0.164 4.164 18 C -0.131 4.131 19 H 0.115 0.885 20 C 0.016 3.984 21 N -0.329 5.329 22 C -0.361 4.361 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.561 5.561 26 Si 0.740 3.260 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.051 3.949 31 C 0.012 3.988 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.051 0.949 49 H 0.035 0.965 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.372 13.979 2.343 21.655 hybrid contribution -0.519 -0.643 0.004 0.826 sum 15.853 13.337 2.346 20.849 Atomic orbital electron populations 1.20354 0.86673 1.03507 1.03379 1.22242 0.96948 0.90124 0.98366 1.77276 0.86438 1.22374 1.26307 1.46110 1.07257 1.04774 1.60728 0.72170 1.20881 0.96988 0.84844 1.01478 1.20479 0.92691 0.98540 1.03541 1.19741 0.90997 0.96417 1.16273 1.19677 1.02611 0.89265 0.94507 1.21194 1.00380 0.91646 0.98410 0.89587 1.22007 0.98071 0.99791 1.00896 1.20204 0.77038 0.88614 0.82414 1.90726 1.50934 1.68438 1.30703 1.48391 1.69353 1.10698 1.05197 1.22367 1.00888 0.95964 0.82874 1.22772 0.99772 0.95047 0.98796 1.23140 0.97156 0.98384 0.94388 0.88546 1.21291 0.88548 0.97421 0.91136 1.44235 1.04355 1.83946 1.00351 1.19035 0.81937 1.41964 0.93142 0.90495 1.24829 0.97999 1.01984 0.95473 1.70012 1.33650 1.55317 0.97074 0.86090 0.85126 0.77504 0.77289 1.20580 1.21787 1.21792 1.21111 0.83159 1.01428 0.89169 1.22462 0.99748 0.81055 0.95522 0.90661 0.90080 0.91109 0.89912 0.90079 0.91235 0.89369 0.90651 0.90246 0.91855 0.91690 0.91710 0.91353 0.90991 0.91186 0.90098 0.94906 0.96497 0.93753 0.93164 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.25 36.01 0.33 -0.53 16 2 C 0.09 1.11 6.27 -82.40 -0.52 0.60 16 3 N -0.30 -3.81 12.70 33.67 0.43 -3.38 16 4 N -0.48 -4.73 7.36 33.48 0.25 -4.49 16 5 H 0.43 2.84 8.96 -182.60 -1.64 1.21 16 6 C 0.09 0.86 7.21 -82.26 -0.59 0.27 16 7 C -0.09 -0.64 10.04 36.00 0.36 -0.28 16 8 C -0.22 -2.66 4.77 -105.06 -0.50 -3.16 16 9 C -0.02 -0.29 3.94 -27.89 -0.11 -0.40 16 10 C -0.09 -1.25 2.05 -91.77 -0.19 -1.44 16 11 H 0.09 0.97 7.83 -51.93 -0.41 0.57 16 12 C -0.15 -1.91 7.78 37.16 0.29 -1.62 16 13 C 0.53 9.37 6.77 -10.98 -0.07 9.29 16 14 O -0.53 -11.65 15.80 5.55 0.09 -11.56 16 15 N -0.60 -10.30 2.99 -162.73 -0.49 -10.78 16 16 C 0.10 1.36 4.66 -2.57 -0.01 1.34 16 17 C -0.13 -1.52 6.35 -24.63 -0.16 -1.68 16 18 C -0.11 -1.81 4.35 -87.73 -0.38 -2.19 16 19 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 20 C 0.14 2.83 6.45 -3.39 -0.02 2.81 16 21 N -0.60 -15.42 3.38 -172.38 -0.58 -16.00 16 22 C -0.23 -6.54 10.25 -15.06 -0.15 -6.69 16 23 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 24 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 25 N -0.91 -27.78 10.24 55.49 0.57 -27.22 16 26 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 C 0.18 4.47 4.91 -4.01 -0.02 4.45 16 31 C 0.12 2.25 3.55 -66.62 -0.24 2.02 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 0.81 6.94 -51.93 -0.36 0.45 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.90 7.25 -51.93 -0.38 0.52 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.63 7.77 -51.93 -0.40 0.23 16 39 H 0.07 1.00 7.59 -51.92 -0.39 0.61 16 40 H 0.08 1.16 7.25 -51.93 -0.38 0.79 16 41 H 0.06 0.78 5.01 -51.93 -0.26 0.52 16 42 H 0.06 0.74 5.38 -51.93 -0.28 0.47 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.72 7.30 -51.93 -0.38 0.34 16 45 H 0.07 1.03 6.15 -51.93 -0.32 0.71 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.02 0.34 6.53 -51.93 -0.34 0.00 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 51 H 0.05 1.44 7.33 -51.93 -0.38 1.06 16 52 H 0.05 1.61 6.66 -51.93 -0.35 1.26 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -35.64 394.72 -10.50 -46.14 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -9.61 Total: 1.36 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.08 Total: 2.51 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.17 Total: -61.87 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.64 -10.50 -46.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076588834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.558 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds