Wall clock time and date at job start Wed Apr 1 2020 03:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30842 * 125.89501 * 2 1 4 4 N 1.40084 * 108.20007 * 180.25239 * 3 2 1 5 5 H 0.97007 * 126.03799 * 179.73664 * 4 3 2 6 6 C 1.34950 * 107.93042 * 359.72334 * 4 3 2 7 7 C 1.50698 * 126.12909 * 180.02562 * 6 4 3 8 8 C 1.35323 * 107.74005 * 359.97438 * 6 4 3 9 9 C 1.50695 * 126.03621 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47485 * 89.99309 * 9 8 6 11 11 H 1.08994 * 109.47405 * 304.99785 * 10 9 8 12 12 C 1.52996 * 109.47068 * 65.00106 * 10 9 8 13 13 C 1.50702 * 109.47159 * 184.99752 * 10 9 8 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 10 9 15 15 N 1.34777 * 119.99928 * 179.72352 * 13 10 9 16 16 C 1.47402 * 125.59099 * 0.30793 * 15 13 10 17 17 C 1.54859 * 104.81007 * 204.60649 * 16 15 13 18 18 C 1.55121 * 101.77693 * 322.81087 * 17 16 15 19 19 H 1.08993 * 113.46388 * 159.24382 * 18 17 16 20 20 C 1.54044 * 108.25770 * 286.09568 * 18 17 16 21 21 N 1.46706 * 106.83201 * 135.80918 * 20 18 17 22 22 C 1.36934 * 125.32678 * 161.79781 * 21 20 18 23 23 H 1.08003 * 119.99422 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00231 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99994 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99990 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47243 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47108 * 120.00072 * 26 24 22 29 29 H 1.48495 * 109.47062 * 239.99585 * 26 24 22 30 30 C 1.46637 * 109.35214 * 341.81848 * 21 20 18 31 31 C 1.46739 * 125.58921 * 179.97438 * 15 13 10 32 32 H 1.08997 * 111.32687 * 56.12919 * 31 15 13 33 33 H 1.08997 * 109.47264 * 270.20992 * 1 2 3 34 34 H 1.09004 * 109.47268 * 30.21554 * 1 2 3 35 35 H 1.09004 * 109.46887 * 150.21051 * 1 2 3 36 36 H 1.09005 * 109.46886 * 269.97291 * 7 6 4 37 37 H 1.08997 * 109.47253 * 29.97350 * 7 6 4 38 38 H 1.09001 * 109.46998 * 149.97283 * 7 6 4 39 39 H 1.09009 * 109.47299 * 329.99292 * 9 8 6 40 40 H 1.09003 * 109.47200 * 209.99748 * 9 8 6 41 41 H 1.09001 * 109.47551 * 179.97438 * 12 10 9 42 42 H 1.09003 * 109.47307 * 300.00352 * 12 10 9 43 43 H 1.09002 * 109.47575 * 59.99595 * 12 10 9 44 44 H 1.09005 * 110.36729 * 323.43579 * 16 15 13 45 45 H 1.08991 * 110.37480 * 85.65820 * 16 15 13 46 46 H 1.08997 * 110.96842 * 80.93526 * 17 16 15 47 47 H 1.09004 * 110.96073 * 204.65346 * 17 16 15 48 48 H 1.09004 * 109.98477 * 255.14857 * 20 18 17 49 49 H 1.08993 * 109.99179 * 16.41909 * 20 18 17 50 50 H 0.96994 * 119.99927 * 180.02562 * 25 24 22 51 51 H 1.08994 * 109.75768 * 120.92674 * 30 21 20 52 52 H 1.08999 * 109.75458 * 241.63282 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6143 -0.7153 -0.0032 7 6 4.8351 -1.5988 -0.0070 8 6 2.3271 -1.1329 0.0047 9 6 1.8600 -2.5656 0.0107 10 6 1.7097 -3.0471 1.4552 11 1 2.6476 -2.8937 1.9888 12 6 0.5960 -2.2554 2.1434 13 6 1.3618 -4.5134 1.4623 14 8 1.2459 -5.1143 0.4152 15 7 1.1854 -5.1584 2.6325 16 6 1.2958 -4.5521 3.9715 17 6 1.6405 -5.7321 4.9132 18 6 0.7937 -6.8805 4.3047 19 1 1.1469 -7.8738 4.5815 20 6 -0.6837 -6.6335 4.6641 21 7 -1.4645 -6.8845 3.4477 22 6 -2.8124 -7.1225 3.4070 23 1 -3.3862 -7.1357 4.3219 24 6 -3.4413 -7.3466 2.1901 25 7 -2.7420 -7.3300 1.0750 26 14 -5.2799 -7.6719 2.1347 27 1 -5.8303 -7.6384 3.5136 28 1 -5.9426 -6.6289 1.3112 29 1 -5.5285 -9.0076 1.5354 30 6 -0.5757 -6.8413 2.2822 31 6 0.8452 -6.5780 2.7823 32 1 1.5705 -7.2150 2.2762 33 1 -0.3634 0.0038 1.0276 34 1 -0.3634 0.8881 -0.5172 35 1 -0.3633 -0.8919 -0.5106 36 1 5.1244 -1.8143 -1.0356 37 1 5.6537 -1.0897 0.5016 38 1 4.6101 -2.5316 0.5102 39 1 2.5907 -3.1883 -0.5056 40 1 0.8984 -2.6364 -0.4978 41 1 0.4886 -2.5987 3.1723 42 1 0.8475 -1.1948 2.1382 43 1 -0.3420 -2.4088 1.6098 44 1 2.0932 -3.8090 3.9868 45 1 0.3487 -4.0972 4.2613 46 1 2.7040 -5.9670 4.8710 47 1 1.3306 -5.5180 5.9361 48 1 -0.9944 -7.3174 5.4540 49 1 -0.8207 -5.6022 4.9893 50 1 -3.1815 -7.4863 0.2246 51 1 -0.6123 -7.7948 1.7553 52 1 -0.8846 -6.0384 1.6129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076588834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:43 Heat of formation + Delta-G solvation = 36.292965 kcal Electronic energy + Delta-G solvation = -32183.783144 eV Core-core repulsion = 28184.228807 eV Total energy + Delta-G solvation = -3999.554337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41839 -41.60907 -39.48814 -36.53809 -36.09675 -34.29281 -33.91791 -32.47527 -32.10705 -30.44933 -29.49153 -28.22679 -27.92941 -26.86178 -26.49799 -24.85853 -23.07750 -22.30938 -21.07868 -20.91816 -20.12392 -19.62883 -18.86608 -18.44535 -17.84074 -16.98066 -16.80537 -16.42999 -16.06789 -15.73051 -15.57714 -15.16008 -14.71552 -14.69515 -14.45358 -14.36512 -14.16788 -14.00610 -13.91175 -13.64689 -13.52274 -13.32208 -13.19431 -13.12410 -13.00878 -12.90024 -12.82127 -12.70047 -12.65503 -12.42071 -12.07458 -12.05373 -11.92321 -11.83924 -11.72289 -11.53298 -11.39001 -11.35128 -10.76657 -10.56170 -10.17085 -9.51699 -9.28655 -8.87144 -7.81833 -5.20151 0.90506 1.43214 1.45025 1.55478 1.66968 1.77109 1.99561 2.20131 2.49234 3.34750 3.41965 3.62460 3.69451 3.75014 3.84956 3.87121 3.96464 4.07356 4.08829 4.24932 4.29915 4.40376 4.42782 4.53191 4.57294 4.58774 4.65318 4.70868 4.72738 4.75108 4.78664 4.88798 4.92275 4.97295 4.98881 5.01113 5.12731 5.16276 5.18291 5.21502 5.23047 5.29467 5.34792 5.41167 5.44918 5.47657 5.69604 5.73387 5.84739 6.21163 6.47869 6.73458 6.76284 7.10230 7.33526 7.81545 8.43214 9.26330 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.003176 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.419577 B = 8812.807106 C = 9950.523498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.079 3.921 3 N -0.327 5.327 4 N -0.469 5.469 5 H 0.450 0.550 6 C 0.104 3.896 7 C -0.094 4.094 8 C -0.247 4.247 9 C -0.011 4.011 10 C -0.080 4.080 11 H 0.120 0.880 12 C -0.142 4.142 13 C 0.519 3.481 14 O -0.587 6.587 15 N -0.603 5.603 16 C 0.094 3.906 17 C -0.107 4.107 18 C -0.098 4.098 19 H 0.115 0.885 20 C 0.135 3.865 21 N -0.623 5.623 22 C -0.239 4.239 23 H 0.088 0.912 24 C -0.071 4.071 25 N -0.951 5.951 26 Si 0.978 3.022 27 H -0.259 1.259 28 H -0.296 1.296 29 H -0.294 1.294 30 C 0.196 3.804 31 C 0.118 3.882 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.042 0.958 49 H 0.031 0.969 50 H 0.242 0.758 51 H -0.003 1.003 52 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.101 14.579 6.444 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 N -0.151 5.151 4 N -0.179 5.179 5 H 0.297 0.703 6 C -0.026 4.026 7 C -0.152 4.152 8 C -0.258 4.258 9 C -0.050 4.050 10 C -0.101 4.101 11 H 0.138 0.862 12 C -0.199 4.199 13 C 0.309 3.691 14 O -0.467 6.467 15 N -0.336 5.336 16 C -0.028 4.028 17 C -0.145 4.145 18 C -0.118 4.118 19 H 0.133 0.867 20 C 0.010 3.990 21 N -0.350 5.350 22 C -0.368 4.368 23 H 0.105 0.895 24 C -0.264 4.264 25 N -0.600 5.600 26 Si 0.806 3.194 27 H -0.183 1.183 28 H -0.223 1.223 29 H -0.221 1.221 30 C 0.070 3.930 31 C 0.013 3.987 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.129 0.871 48 H 0.060 0.940 49 H 0.049 0.951 50 H 0.051 0.949 51 H 0.015 0.985 52 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 18.922 15.560 5.717 25.156 hybrid contribution -1.286 -1.120 -1.022 1.988 sum 17.637 14.439 4.695 23.272 Atomic orbital electron populations 1.20354 0.86482 1.03321 1.03737 1.22400 0.97413 0.90362 0.98482 1.77223 0.87647 1.22777 1.27461 1.46133 1.07030 1.05063 1.59636 0.70350 1.21281 0.97334 0.85077 0.98910 1.20622 0.92003 0.98063 1.04555 1.19628 0.92055 0.95313 1.18821 1.19467 1.01005 0.90374 0.94183 1.21174 1.01829 0.88052 0.99021 0.86182 1.21944 0.96566 1.00693 1.00729 1.21128 0.75898 0.90230 0.81799 1.90698 1.53274 1.69937 1.32816 1.48490 1.68392 1.09812 1.06865 1.22701 1.01998 0.97392 0.80687 1.22814 1.00611 0.91621 0.99420 1.23135 0.95644 1.01372 0.91636 0.86694 1.21589 0.90215 0.98142 0.89045 1.44548 1.04223 1.83681 1.02527 1.19505 0.83595 1.40341 0.93364 0.89450 1.25737 1.02601 1.02799 0.95254 1.70308 1.35223 1.57171 0.97302 0.85018 0.79767 0.76622 0.77998 1.18281 1.22334 1.22120 1.20635 0.86986 0.96758 0.88607 1.22171 0.95472 0.83079 0.97962 0.91117 0.89447 0.90444 0.90923 0.89184 0.88406 0.89400 0.91217 0.93146 0.90980 0.89991 0.94470 0.87278 0.91958 0.88198 0.87110 0.93975 0.95112 0.94907 0.98479 0.98007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.25 71.24 0.66 -1.12 16 2 C 0.08 1.93 6.27 43.10 0.27 2.20 16 3 N -0.33 -7.87 12.70 -47.38 -0.60 -8.47 16 4 N -0.47 -8.13 7.36 -48.00 -0.35 -8.48 16 5 H 0.45 4.60 8.96 -213.32 -1.91 2.69 16 6 C 0.10 1.83 7.21 41.41 0.30 2.13 16 7 C -0.09 -0.98 10.04 71.24 0.71 -0.26 16 8 C -0.25 -5.68 4.77 -20.15 -0.10 -5.77 16 9 C -0.01 -0.30 3.94 29.85 0.12 -0.18 16 10 C -0.08 -2.04 2.05 -11.54 -0.02 -2.07 16 11 H 0.12 2.29 7.83 -2.39 -0.02 2.27 16 12 C -0.14 -3.50 7.78 71.98 0.56 -2.94 16 13 C 0.52 18.77 6.77 87.66 0.59 19.36 16 14 O -0.59 -27.53 15.80 -3.04 -0.05 -27.58 16 15 N -0.60 -20.22 2.99 -787.15 -2.35 -22.57 16 16 C 0.09 2.14 4.66 86.84 0.40 2.54 16 17 C -0.11 -2.03 6.35 31.96 0.20 -1.83 16 18 C -0.10 -2.95 4.35 -8.92 -0.04 -2.99 16 19 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 20 C 0.13 5.14 6.45 86.69 0.56 5.70 16 21 N -0.62 -32.73 3.38 -699.28 -2.36 -35.09 16 22 C -0.24 -13.73 10.25 84.03 0.86 -12.87 16 23 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 24 C -0.07 -4.26 5.48 84.86 0.47 -3.79 16 25 N -0.95 -61.82 10.24 21.65 0.22 -61.60 16 26 Si 0.98 47.77 29.55 68.60 2.03 49.79 16 27 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 30 C 0.20 10.57 4.91 86.33 0.42 11.00 16 31 C 0.12 4.64 3.55 45.71 0.16 4.81 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.09 1.77 6.94 -2.39 -0.02 1.75 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.72 7.25 -2.38 -0.02 1.70 16 36 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.09 0.98 7.77 -2.39 -0.02 0.96 16 39 H 0.07 1.91 7.59 -2.38 -0.02 1.89 16 40 H 0.05 1.62 7.25 -2.39 -0.02 1.60 16 41 H 0.07 1.63 5.01 -2.39 -0.01 1.62 16 42 H 0.08 1.75 5.38 -2.39 -0.01 1.74 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.11 1.68 7.30 -2.38 -0.02 1.66 16 45 H 0.06 1.58 6.15 -2.39 -0.01 1.57 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.11 1.58 8.08 -2.39 -0.02 1.56 16 48 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.03 1.12 6.53 -2.39 -0.02 1.10 16 50 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 51 H 0.00 -0.19 7.33 -2.39 -0.02 -0.20 16 52 H 0.00 0.11 6.66 -2.39 -0.02 0.09 16 Total: -1.00 -86.14 394.72 1.69 -84.44 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.97 Total: 15.65 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.13 Total: 13.90 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -5.45 Total: -136.22 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Total: -86.14 1.69 -84.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076588834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.738 kcal (2) G-P(sol) polarization free energy of solvation -86.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds