Wall clock time and date at job start Wed Apr 1 2020 03:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30844 * 125.89824 * 2 1 4 4 N 1.40088 * 108.20308 * 180.25424 * 3 2 1 5 5 H 0.96996 * 126.03547 * 179.73743 * 4 3 2 6 6 C 1.34947 * 107.92503 * 359.72098 * 4 3 2 7 7 C 1.50702 * 126.12799 * 180.02562 * 6 4 3 8 8 C 1.35317 * 107.74762 * 0.02562 * 6 4 3 9 9 C 1.50702 * 126.03665 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47152 * 89.99778 * 9 8 6 11 11 H 1.08995 * 109.47339 * 55.00031 * 10 9 8 12 12 C 1.52993 * 109.47162 * 294.99478 * 10 9 8 13 13 C 1.50706 * 109.46829 * 174.99767 * 10 9 8 14 14 O 1.21276 * 120.00054 * 359.97438 * 13 10 9 15 15 N 1.34775 * 119.99782 * 180.02562 * 13 10 9 16 16 C 1.47348 * 125.52508 * 359.97118 * 15 13 10 17 17 C 1.54941 * 104.90115 * 156.77271 * 16 15 13 18 18 C 1.54790 * 101.45733 * 37.25589 * 17 16 15 19 19 H 1.08998 * 112.84581 * 86.23432 * 18 17 16 20 20 C 1.53513 * 109.68503 * 212.92403 * 18 17 16 21 21 N 1.46654 * 107.05261 * 84.08589 * 20 18 17 22 22 C 1.36932 * 125.29109 * 197.35701 * 21 20 18 23 23 H 1.08002 * 119.99921 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99980 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00173 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00137 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46996 * 59.99534 * 26 24 22 28 28 H 1.48497 * 109.47374 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47074 * 300.00233 * 26 24 22 30 30 C 1.46495 * 109.42081 * 17.38307 * 21 20 18 31 31 C 1.47369 * 125.54304 * 180.02562 * 15 13 10 32 32 H 1.08991 * 112.75684 * 56.11193 * 31 15 13 33 33 H 1.08995 * 109.47410 * 270.20917 * 1 2 3 34 34 H 1.08998 * 109.46855 * 30.21414 * 1 2 3 35 35 H 1.09001 * 109.46474 * 150.21133 * 1 2 3 36 36 H 1.09003 * 109.47063 * 269.98031 * 7 6 4 37 37 H 1.09005 * 109.46604 * 29.97072 * 7 6 4 38 38 H 1.08993 * 109.47306 * 149.97036 * 7 6 4 39 39 H 1.08992 * 109.47457 * 329.99583 * 9 8 6 40 40 H 1.09002 * 109.46611 * 209.99680 * 9 8 6 41 41 H 1.09002 * 109.47063 * 300.00507 * 12 10 9 42 42 H 1.09003 * 109.47058 * 59.99955 * 12 10 9 43 43 H 1.09001 * 109.47193 * 180.02562 * 12 10 9 44 44 H 1.09003 * 110.35249 * 37.91590 * 16 15 13 45 45 H 1.08999 * 110.44217 * 275.67424 * 16 15 13 46 46 H 1.09001 * 111.03421 * 279.21110 * 17 16 15 47 47 H 1.09004 * 111.06027 * 155.31436 * 17 16 15 48 48 H 1.08997 * 109.92402 * 324.73693 * 20 18 17 49 49 H 1.09000 * 110.08347 * 203.52649 * 20 18 17 50 50 H 0.96992 * 120.00074 * 179.97438 * 25 24 22 51 51 H 1.09002 * 109.71712 * 117.76499 * 30 21 20 52 52 H 1.09001 * 109.71175 * 238.36286 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 1 4.3908 1.2079 -0.0108 6 6 3.6142 -0.7153 -0.0032 7 6 4.8350 -1.5990 -0.0070 8 6 2.3272 -1.1330 0.0036 9 6 1.8600 -2.5658 0.0092 10 6 1.7085 -3.0471 1.4536 11 1 1.0453 -2.3717 1.9940 12 6 3.0799 -3.0660 2.1315 13 6 1.1251 -4.4367 1.4614 14 8 0.8566 -4.9875 0.4148 15 7 0.9009 -5.0668 2.6315 16 6 1.1798 -4.5143 3.9687 17 6 0.2439 -5.2949 4.9255 18 6 0.2822 -6.7123 4.3044 19 1 1.1186 -7.3103 4.6660 20 6 -1.0742 -7.4023 4.5067 21 7 -1.9494 -6.9581 3.4171 22 6 -3.3147 -7.0627 3.4064 23 1 -3.8293 -7.5013 4.2486 24 6 -4.0373 -6.6052 2.3131 25 7 -3.4102 -6.0702 1.2869 26 14 -5.8999 -6.7473 2.2987 27 1 -6.4630 -5.9883 3.4441 28 1 -6.4290 -6.1911 1.0276 29 1 -6.2882 -8.1760 2.4129 30 6 -1.1361 -6.3856 2.3416 31 6 0.3381 -6.4205 2.7813 32 1 0.9077 -7.1762 2.2406 33 1 -0.3634 0.0038 1.0276 34 1 -0.3633 0.8881 -0.5172 35 1 -0.3632 -0.8919 -0.5106 36 1 5.1244 -1.8144 -1.0356 37 1 5.6537 -1.0897 0.5016 38 1 4.6101 -2.5316 0.5102 39 1 2.5911 -3.1883 -0.5064 40 1 0.8989 -2.6365 -0.5001 41 1 3.7430 -3.7415 1.5910 42 1 3.5019 -2.0610 2.1258 43 1 2.9720 -3.4094 3.1603 44 1 0.9467 -3.4498 3.9952 45 1 2.2225 -4.6803 4.2392 46 1 -0.7662 -4.8859 4.9046 47 1 0.6397 -5.3021 5.9411 48 1 -1.4996 -7.1108 5.4670 49 1 -0.9529 -8.4848 4.4678 50 1 -3.9151 -5.7509 0.5228 51 1 -1.2625 -6.9732 1.4323 52 1 -1.4409 -5.3552 2.1587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076588835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:48 Heat of formation + Delta-G solvation = 62.950099 kcal Electronic energy + Delta-G solvation = -32052.180927 eV Core-core repulsion = 28053.782530 eV Total energy + Delta-G solvation = -3998.398397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54479 -40.11734 -38.02285 -35.08731 -34.79488 -33.55186 -32.26528 -31.10252 -30.56559 -28.90163 -28.30854 -27.69333 -26.72278 -25.68717 -24.50194 -23.55713 -21.89409 -20.46343 -20.20346 -19.56440 -19.05075 -18.46885 -17.35652 -16.94428 -16.42690 -15.66465 -15.62909 -15.12369 -14.55817 -14.48265 -14.15740 -13.88178 -13.61557 -13.51731 -13.40513 -13.15744 -13.03107 -12.80199 -12.58731 -12.50029 -12.44736 -12.21831 -12.07759 -11.96534 -11.84352 -11.71076 -11.33462 -11.15172 -10.99826 -10.92631 -10.83759 -10.72028 -10.48037 -10.41962 -10.17965 -9.96727 -9.81786 -9.64829 -9.32667 -9.19917 -8.52420 -8.39475 -8.07992 -6.74971 -5.61309 -2.98094 1.73244 2.61588 2.73613 3.15973 3.43669 3.45411 3.48961 3.51082 4.49074 4.55369 4.56666 4.71913 4.82093 4.88751 4.97812 5.03682 5.11552 5.20837 5.24462 5.27569 5.42846 5.49272 5.53344 5.54250 5.58007 5.59511 5.65243 5.68407 5.79723 5.81932 5.82190 5.87019 5.97860 5.98822 6.02926 6.05995 6.11712 6.24630 6.29822 6.37375 6.44793 6.64218 6.65316 6.66005 6.72162 6.91409 7.17189 7.61671 7.65591 7.70202 7.97821 8.08996 8.36578 8.71289 9.29909 9.90656 10.53792 11.47702 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.003140 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.810558 B = 8915.812101 C =10248.351028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.088 3.912 3 N -0.300 5.300 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.089 3.911 7 C -0.105 4.105 8 C -0.224 4.224 9 C -0.021 4.021 10 C -0.098 4.098 11 H 0.093 0.907 12 C -0.151 4.151 13 C 0.530 3.470 14 O -0.529 6.529 15 N -0.606 5.606 16 C 0.104 3.896 17 C -0.123 4.123 18 C -0.111 4.111 19 H 0.086 0.914 20 C 0.145 3.855 21 N -0.602 5.602 22 C -0.235 4.235 23 H 0.077 0.923 24 C -0.005 4.005 25 N -0.913 5.913 26 Si 0.910 3.090 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.181 3.819 31 C 0.114 3.886 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.015 0.985 50 H 0.253 0.747 51 H 0.043 0.957 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.691 10.339 2.757 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 N -0.124 5.124 4 N -0.189 5.189 5 H 0.278 0.722 6 C -0.039 4.039 7 C -0.163 4.163 8 C -0.235 4.235 9 C -0.060 4.060 10 C -0.120 4.120 11 H 0.111 0.889 12 C -0.208 4.208 13 C 0.318 3.682 14 O -0.405 6.405 15 N -0.340 5.340 16 C -0.020 4.020 17 C -0.161 4.161 18 C -0.131 4.131 19 H 0.105 0.895 20 C 0.018 3.982 21 N -0.329 5.329 22 C -0.363 4.363 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.559 5.559 26 Si 0.740 3.260 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.055 3.945 31 C 0.011 3.989 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.055 0.945 49 H 0.033 0.967 50 H 0.064 0.936 51 H 0.061 0.939 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.400 11.414 1.939 21.739 hybrid contribution -0.533 -0.497 0.022 0.729 sum 17.867 10.917 1.961 21.030 Atomic orbital electron populations 1.20257 0.86537 1.03637 1.03361 1.22296 0.97040 0.90168 0.98329 1.77285 0.86409 1.22348 1.26330 1.46119 1.07273 1.04794 1.60720 0.72196 1.20844 0.96930 0.84785 1.01384 1.20736 0.92746 0.99154 1.03670 1.19740 0.91025 0.96370 1.16384 1.19667 1.02649 0.89273 0.94426 1.21205 0.98072 0.94072 0.98638 0.88902 1.22082 0.95597 1.02251 1.00920 1.20178 0.78232 0.87340 0.82499 1.90728 1.51592 1.67406 1.30780 1.48568 1.63220 1.17004 1.05217 1.22338 0.98411 0.98234 0.82988 1.22774 1.00825 0.95036 0.97418 1.22929 0.99078 0.96446 0.94644 0.89536 1.21057 0.88565 0.95694 0.92865 1.44135 1.02094 1.71213 1.15487 1.18943 0.80169 1.35021 1.02200 0.90529 1.24836 0.97950 1.00818 0.96587 1.69997 1.33489 1.45169 1.07286 0.86242 0.85319 0.77632 0.76774 1.21237 1.21609 1.21216 1.21257 0.83045 0.99561 0.90605 1.22817 0.97947 0.82792 0.95353 0.90366 0.90286 0.90999 0.89810 0.90215 0.91262 0.88561 0.90884 0.89954 0.92211 0.91602 0.91676 0.91183 0.91865 0.89572 0.90699 0.94489 0.96688 0.93641 0.93880 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.09 1.13 7.22 -82.40 -0.59 0.54 16 3 N -0.30 -3.89 12.70 33.67 0.43 -3.46 16 4 N -0.48 -4.77 7.36 33.48 0.25 -4.53 16 5 H 0.43 2.87 8.96 -182.61 -1.64 1.23 16 6 C 0.09 0.88 6.26 -82.26 -0.52 0.36 16 7 C -0.10 -0.70 9.47 36.01 0.34 -0.36 16 8 C -0.22 -2.69 4.82 -105.05 -0.51 -3.20 16 9 C -0.02 -0.28 4.00 -27.88 -0.11 -0.39 16 10 C -0.10 -1.29 2.07 -91.77 -0.19 -1.48 16 11 H 0.09 1.22 7.84 -51.93 -0.41 0.81 16 12 C -0.15 -1.50 7.40 37.15 0.28 -1.23 16 13 C 0.53 9.32 6.93 -10.98 -0.08 9.25 16 14 O -0.53 -11.60 16.01 5.56 0.09 -11.51 16 15 N -0.61 -10.28 2.83 -161.77 -0.46 -10.74 16 16 C 0.10 1.34 5.13 -2.55 -0.01 1.33 16 17 C -0.12 -1.74 6.32 -24.76 -0.16 -1.90 16 18 C -0.11 -1.82 3.97 -88.26 -0.35 -2.17 16 19 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 20 C 0.14 2.91 6.50 -3.69 -0.02 2.89 16 21 N -0.60 -15.44 3.37 -172.27 -0.58 -16.02 16 22 C -0.24 -6.60 10.25 -15.06 -0.15 -6.75 16 23 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 24 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 25 N -0.91 -27.72 10.23 55.49 0.57 -27.15 16 26 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 30 C 0.18 4.57 4.62 -3.59 -0.02 4.56 16 31 C 0.11 2.23 3.81 -65.85 -0.25 1.98 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.97 7.25 -51.93 -0.38 0.59 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.67 4.54 -51.93 -0.24 0.43 16 39 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 40 H 0.08 1.23 7.06 -51.93 -0.37 0.87 16 41 H 0.06 0.57 6.97 -51.93 -0.36 0.20 16 42 H 0.07 0.59 5.80 -51.93 -0.30 0.29 16 43 H 0.06 0.60 4.97 -51.93 -0.26 0.35 16 44 H 0.07 0.83 7.41 -51.93 -0.38 0.45 16 45 H 0.06 0.66 7.01 -51.93 -0.36 0.30 16 46 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.04 0.72 7.95 -51.93 -0.41 0.30 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 51 H 0.04 1.27 7.51 -51.93 -0.39 0.88 16 52 H 0.06 1.60 6.89 -51.93 -0.36 1.24 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -35.52 395.01 -10.44 -45.96 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -9.60 Total: 1.41 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.07 Total: 2.66 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.20 Total: -61.89 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.52 -10.44 -45.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076588835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.910 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds