Wall clock time and date at job start Wed Apr 1 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34667 * 125.99100 * 2 1 4 4 N 1.36883 * 106.81749 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.39395 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47210 * 354.51273 * 5 4 3 7 7 C 1.53004 * 109.46919 * 234.51367 * 5 4 3 8 8 C 1.50700 * 109.47012 * 114.51877 * 5 4 3 9 9 O 1.21272 * 120.00160 * 354.36803 * 8 5 4 10 10 N 1.34780 * 119.99669 * 174.37135 * 8 5 4 11 11 C 1.46504 * 119.99446 * 179.97438 * 10 8 5 12 12 H 1.08990 * 112.88868 * 333.15849 * 11 10 8 13 13 C 1.53954 * 113.65822 * 104.50795 * 11 10 8 14 14 C 1.53953 * 87.37847 * 139.25379 * 13 11 10 15 15 H 1.09006 * 113.65992 * 89.77870 * 14 13 11 16 16 N 1.46495 * 113.66282 * 220.83019 * 14 13 11 17 17 C 1.36933 * 120.00498 * 255.49738 * 16 14 13 18 18 H 1.08003 * 119.99952 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00523 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99464 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99990 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47455 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46978 * 120.00506 * 21 19 17 24 24 H 1.48500 * 109.46801 * 240.00239 * 21 19 17 25 25 C 1.52911 * 113.74208 * 201.73220 * 11 10 8 26 26 C 1.52908 * 121.13601 * 94.90314 * 25 11 10 27 27 C 1.53941 * 86.78456 * 209.38023 * 26 25 11 28 28 C 1.52904 * 121.14097 * 346.34073 * 25 11 10 29 29 C 1.35043 * 107.20657 * 0.25536 * 4 3 2 30 30 N 1.30501 * 108.69354 * 359.56774 * 29 4 3 31 31 H 1.08997 * 109.46943 * 90.00190 * 1 2 3 32 32 H 1.09002 * 109.47269 * 210.00506 * 1 2 3 33 33 H 1.09006 * 109.47090 * 330.00017 * 1 2 3 34 34 H 1.08007 * 126.59092 * 359.95445 * 3 2 1 35 35 H 1.09001 * 109.46958 * 180.02562 * 6 5 4 36 36 H 1.09005 * 109.47359 * 299.99982 * 6 5 4 37 37 H 1.08998 * 109.47040 * 60.00568 * 6 5 4 38 38 H 1.09004 * 109.47051 * 300.00529 * 7 5 4 39 39 H 1.09001 * 109.47219 * 59.99769 * 7 5 4 40 40 H 1.08995 * 109.47435 * 180.02562 * 7 5 4 41 41 H 0.96998 * 120.00359 * 0.02562 * 10 8 5 42 42 H 1.08997 * 113.57708 * 253.89936 * 13 11 10 43 43 H 1.09000 * 113.58050 * 24.61334 * 13 11 10 44 44 H 0.97001 * 120.00179 * 75.49421 * 16 14 13 45 45 H 0.97009 * 119.99879 * 179.97438 * 20 19 17 46 46 H 1.09005 * 113.66075 * 323.85378 * 26 25 11 47 47 H 1.09003 * 113.66108 * 94.90799 * 26 25 11 48 48 H 1.08998 * 113.58046 * 270.12815 * 27 26 25 49 49 H 1.09005 * 113.57998 * 139.33591 * 27 26 25 50 50 H 1.08994 * 113.66391 * 265.09221 * 28 25 11 51 51 H 1.09009 * 113.66173 * 36.05095 * 28 25 11 52 52 H 1.07998 * 125.64934 * 179.71725 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6400 -0.0006 5 6 4.7996 1.4684 -0.0013 6 6 4.4084 2.9410 -0.1393 7 6 5.6932 1.0659 -1.1763 8 6 5.5480 1.2663 1.2910 9 8 5.0653 0.5860 2.1713 10 7 6.7538 1.8418 1.4685 11 6 7.4810 1.6457 2.7251 12 1 6.8217 1.4456 3.5697 13 6 8.6564 0.6580 2.6111 14 6 9.4583 1.6184 3.5081 15 1 9.3557 1.4105 4.5733 16 7 10.8524 1.7868 3.0908 17 6 11.8558 1.1717 3.7908 18 1 11.6194 0.5621 4.6504 19 6 13.1768 1.3308 3.3950 20 7 13.4648 2.0732 2.3471 21 14 14.5454 0.4911 4.3496 22 1 13.9619 -0.2805 5.4762 23 1 15.2838 -0.4304 3.4490 24 1 15.4786 1.5163 4.8820 25 6 8.5274 2.7248 3.0057 26 6 8.1982 3.9382 3.8760 27 6 9.2362 4.7098 3.0411 28 6 8.9744 3.6961 1.9125 29 6 3.5449 -0.7096 -0.0067 30 7 2.2952 -1.0852 -0.0004 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.9751 2.1201 -0.0007 35 1 5.3074 3.5573 -0.1403 36 1 3.8671 3.0872 -1.0741 37 1 3.7719 3.2278 0.6978 38 1 5.9719 0.0167 -1.0781 39 1 5.1519 1.2119 -2.1111 40 1 6.5924 1.6818 -1.1767 41 1 7.1397 2.3863 0.7647 42 1 8.4597 -0.3090 3.0739 43 1 9.0554 0.5698 1.6006 44 1 11.0648 2.3339 2.3185 45 1 14.3880 2.1847 2.0707 46 1 7.1784 4.3023 3.7512 47 1 8.4811 3.8162 4.9216 48 1 10.2466 4.6594 3.4468 49 1 8.9289 5.7261 2.7944 50 1 9.8772 3.3807 1.3896 51 1 8.1731 3.9909 1.2349 52 1 4.4004 -1.3688 -0.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078657351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:01 Heat of formation + Delta-G solvation = 83.522369 kcal Electronic energy + Delta-G solvation = -31447.768944 eV Core-core repulsion = 27450.262628 eV Total energy + Delta-G solvation = -3997.506316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.42674 -40.76497 -39.35843 -36.10200 -35.01740 -34.28005 -32.71684 -31.79102 -30.74141 -29.84017 -28.38067 -26.56761 -25.62657 -25.14860 -24.27078 -23.84681 -22.55779 -21.29298 -20.57070 -20.17251 -19.83840 -18.35832 -17.82321 -16.97235 -16.88321 -16.05894 -15.47225 -15.31942 -15.03432 -14.73448 -14.65472 -14.43307 -14.18970 -14.01938 -13.43905 -13.36197 -13.13223 -12.95307 -12.89755 -12.81708 -12.75038 -12.60320 -12.46738 -12.20984 -12.17564 -11.96434 -11.80426 -11.62486 -11.32196 -11.00634 -10.88766 -10.80606 -10.29339 -10.22027 -10.11620 -10.00165 -9.98470 -9.88184 -9.58679 -9.41666 -8.93738 -8.84010 -8.38326 -7.05525 -5.87567 -3.16039 1.89067 2.30171 2.45132 3.01417 3.12070 3.37225 3.44297 3.45565 4.03053 4.16752 4.26050 4.51228 4.51858 4.62332 4.66774 4.81115 4.90772 4.94072 5.02982 5.05561 5.09497 5.13282 5.16297 5.18316 5.21052 5.35292 5.43621 5.53465 5.56958 5.58257 5.74726 5.75178 5.77472 5.86744 5.87154 5.88455 5.95626 6.09738 6.18808 6.22858 6.27945 6.40534 6.42118 6.50244 6.68752 6.74348 6.80180 6.94262 7.05941 7.38691 7.63617 8.00342 8.04498 8.31257 9.43376 9.98746 10.33710 11.34684 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002406 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.299897 B =11632.625071 C =12190.477231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.004 4.004 3 C -0.056 4.056 4 N -0.436 5.436 5 C 0.142 3.858 6 C -0.154 4.154 7 C -0.158 4.158 8 C 0.506 3.494 9 O -0.522 6.522 10 N -0.701 5.701 11 C 0.130 3.870 12 H 0.109 0.891 13 C -0.173 4.173 14 C 0.193 3.807 15 H 0.081 0.919 16 N -0.706 5.706 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.117 4.117 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.117 4.117 29 C 0.210 3.790 30 N -0.495 5.495 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.399 0.601 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.077 5.230 -8.046 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 C -0.188 4.188 4 N -0.119 5.119 5 C 0.053 3.947 6 C -0.211 4.211 7 C -0.216 4.216 8 C 0.289 3.711 9 O -0.397 6.397 10 N -0.352 5.352 11 C 0.026 3.974 12 H 0.127 0.873 13 C -0.215 4.215 14 C 0.080 3.920 15 H 0.098 0.902 16 N -0.345 5.345 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.119 4.119 26 C -0.164 4.164 27 C -0.167 4.167 28 C -0.155 4.155 29 C -0.073 4.073 30 N -0.213 5.213 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.187 0.813 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.235 0.765 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.076 0.924 50 H 0.099 0.901 51 H 0.087 0.913 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -20.417 3.928 -7.261 22.023 hybrid contribution 1.497 0.780 -0.105 1.691 sum -18.920 4.708 -7.365 20.842 Atomic orbital electron populations 1.19985 0.87906 1.02468 1.01847 1.20669 0.96369 0.88646 1.07610 1.22278 0.82778 1.00309 1.13397 1.45169 1.05255 1.07248 1.54182 1.20816 0.85177 0.93219 0.95524 1.22120 1.03879 0.91038 1.04105 1.22229 0.99344 1.03718 0.96269 1.20370 0.81916 0.80468 0.88360 1.90779 1.67448 1.38301 1.43162 1.45948 1.18426 1.51633 1.19229 1.22359 0.91168 0.98011 0.85862 0.87309 1.24284 0.96049 0.98640 1.02573 1.21069 0.84341 0.90371 0.96209 0.90162 1.42336 0.99175 1.58393 1.34558 1.19330 0.86341 1.23293 1.08419 0.91000 1.24741 0.97292 1.00406 0.98286 1.69656 1.18191 1.43090 1.27031 0.86128 0.82352 0.78689 0.79079 1.20493 1.21855 1.21852 1.23600 0.96772 0.93216 0.98338 1.22716 0.98404 0.96247 0.99050 1.22728 1.00447 0.96663 0.96852 1.22436 1.00964 0.96056 0.96045 1.24733 0.96868 0.81816 1.03886 1.70198 1.00312 1.30322 1.20497 0.91690 0.91326 0.91615 0.81300 0.89594 0.90068 0.90771 0.90725 0.90276 0.89625 0.76514 0.92060 0.90097 0.77767 0.93496 0.91029 0.91374 0.89046 0.92434 0.90144 0.91303 0.78590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.42 36.01 0.38 -0.20 16 2 C 0.00 -0.05 7.09 -82.86 -0.59 -0.64 16 3 C -0.06 -0.60 10.38 -16.56 -0.17 -0.77 16 4 N -0.44 -4.88 2.31 -105.82 -0.24 -5.12 16 5 C 0.14 1.28 1.07 -132.97 -0.14 1.14 16 6 C -0.15 -0.97 7.38 37.16 0.27 -0.70 16 7 C -0.16 -1.11 8.29 37.16 0.31 -0.80 16 8 C 0.51 6.19 6.44 -10.98 -0.07 6.12 16 9 O -0.52 -8.73 15.51 5.56 0.09 -8.65 16 10 N -0.70 -7.85 5.13 -53.37 -0.27 -8.12 16 11 C 0.13 1.81 4.08 -67.48 -0.28 1.54 16 12 H 0.11 1.65 7.54 -51.93 -0.39 1.26 16 13 C -0.17 -2.85 7.68 -25.75 -0.20 -3.05 16 14 C 0.19 3.52 4.36 -67.40 -0.29 3.22 16 15 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 16 N -0.71 -16.12 5.35 -52.91 -0.28 -16.41 16 17 C -0.24 -6.36 9.98 -15.06 -0.15 -6.51 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 21 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C -0.12 -1.67 1.07 -154.63 -0.17 -1.84 16 26 C -0.13 -1.68 7.84 -26.29 -0.21 -1.89 16 27 C -0.13 -1.79 8.08 -25.76 -0.21 -2.00 16 28 C -0.12 -1.56 6.78 -26.29 -0.18 -1.74 16 29 C 0.21 2.73 11.05 -90.37 -1.00 1.73 16 30 N -0.49 -7.20 11.25 -10.88 -0.12 -7.32 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.17 1.31 7.28 -52.48 -0.38 0.93 16 35 H 0.09 0.41 7.97 -51.93 -0.41 0.00 16 36 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.07 0.52 7.70 -51.93 -0.40 0.12 16 38 H 0.07 0.58 7.74 -51.93 -0.40 0.18 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.48 7.27 -51.93 -0.38 0.10 16 41 H 0.40 3.60 5.85 -40.82 -0.24 3.36 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.39 9.24 5.86 -40.82 -0.24 9.00 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 1.27 6.42 -51.93 -0.33 0.94 16 51 H 0.07 0.71 6.96 -51.92 -0.36 0.35 16 52 H 0.20 2.23 7.93 -52.49 -0.42 1.81 16 LS Contribution 413.24 15.07 6.23 6.23 Total: -1.00 -32.96 413.24 -10.26 -43.22 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -8.57 Total: 12.23 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.78 Total: -6.79 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.20 Total: -62.91 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.96 -10.26 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078657351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.747 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds