Wall clock time and date at job start Wed Apr 1 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34253 * 126.29289 * 2 1 4 4 H 0.97009 * 125.75517 * 0.04155 * 3 2 1 5 5 N 1.39933 * 108.49222 * 180.24639 * 3 2 1 6 6 C 1.30447 * 108.89678 * 359.75563 * 5 3 2 7 7 C 1.50703 * 125.98988 * 179.97438 * 6 5 3 8 8 C 1.53008 * 109.46750 * 299.99823 * 7 6 5 9 9 C 1.52995 * 109.47092 * 59.99519 * 7 6 5 10 10 C 1.38043 * 126.28711 * 179.83038 * 2 1 3 11 11 C 1.47425 * 126.41898 * 0.02562 * 10 2 1 12 12 O 1.21603 * 120.00138 * 269.69269 * 11 10 2 13 13 N 1.34782 * 119.99725 * 89.68772 * 11 10 2 14 14 C 1.46505 * 119.99630 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.88609 * 23.65995 * 14 13 11 16 16 C 1.53948 * 113.74574 * 252.22883 * 14 13 11 17 17 C 1.53957 * 87.29686 * 270.25087 * 16 14 13 18 18 H 1.09002 * 113.65722 * 89.73762 * 17 16 14 19 19 N 1.46498 * 113.66407 * 220.79629 * 17 16 14 20 20 C 1.36932 * 119.99792 * 252.18888 * 19 17 16 21 21 H 1.08000 * 120.00566 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99800 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00122 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99829 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47346 * 89.99703 * 24 22 20 26 26 H 1.48504 * 109.46928 * 209.99602 * 24 22 20 27 27 H 1.48499 * 109.47327 * 329.99173 * 24 22 20 28 28 C 1.52909 * 113.65992 * 154.99882 * 14 13 11 29 29 C 1.52910 * 121.13680 * 215.38345 * 28 14 13 30 30 C 1.53949 * 86.78077 * 100.82535 * 29 28 14 31 31 C 1.52905 * 121.13655 * 323.95072 * 28 14 13 32 32 H 1.09002 * 109.46923 * 270.17224 * 1 2 3 33 33 H 1.08994 * 109.47122 * 30.16935 * 1 2 3 34 34 H 1.08995 * 109.47611 * 150.17827 * 1 2 3 35 35 H 1.09000 * 109.46948 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47304 * 60.00082 * 8 7 6 37 37 H 1.09002 * 109.46557 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47136 * 299.99790 * 8 7 6 39 39 H 1.09001 * 109.47362 * 300.00162 * 9 7 6 40 40 H 1.09004 * 109.47103 * 60.00499 * 9 7 6 41 41 H 1.09002 * 109.47125 * 179.97438 * 9 7 6 42 42 H 0.96996 * 119.99930 * 0.02562 * 13 11 10 43 43 H 1.09001 * 113.57503 * 155.64767 * 16 14 13 44 44 H 1.08996 * 113.57974 * 24.85691 * 16 14 13 45 45 H 0.96998 * 119.99697 * 72.18259 * 19 17 16 46 46 H 0.96992 * 120.00080 * 180.02562 * 23 22 20 47 47 H 1.09006 * 113.66074 * 215.29190 * 29 28 14 48 48 H 1.08994 * 113.66448 * 346.35155 * 29 28 14 49 49 H 1.09009 * 113.57633 * 270.12923 * 30 29 28 50 50 H 1.09000 * 113.65567 * 139.34741 * 30 29 28 51 51 H 1.08990 * 113.66878 * 13.64950 * 31 28 14 52 52 H 1.09000 * 113.66430 * 144.61574 * 31 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 0.0006 5 7 3.6340 0.6543 -0.0057 6 6 3.6590 -0.6499 -0.0038 7 6 4.8951 -1.5120 -0.0090 8 6 5.7194 -1.2140 -1.2631 9 6 5.7325 -1.2102 1.2353 10 6 2.3240 -1.1127 0.0033 11 6 1.8858 -2.5203 0.0069 12 8 1.7100 -3.0997 1.0615 13 7 1.6798 -3.1650 -1.1587 14 6 1.2437 -4.5636 -1.1550 15 1 0.7371 -4.8473 -0.2326 16 6 2.3383 -5.5553 -1.5891 17 6 1.8361 -5.3654 -3.0320 18 1 2.3284 -4.5506 -3.5628 19 7 1.7912 -6.6077 -3.8072 20 6 2.7061 -6.8271 -4.8022 21 1 3.4604 -6.0843 -5.0158 22 6 2.6632 -8.0039 -5.5372 23 7 1.7437 -8.9091 -5.2774 24 14 3.9116 -8.3036 -6.8940 25 1 5.1007 -8.9912 -6.3297 26 1 3.3023 -9.1536 -7.9484 27 1 4.3243 -7.0043 -7.4829 28 6 0.4901 -4.9747 -2.4204 29 6 -0.6701 -5.9690 -2.3618 30 6 -1.6057 -4.7492 -2.4455 31 6 -0.4491 -4.0009 -3.1329 32 1 -0.3633 0.0031 1.0277 33 1 -0.3633 0.8884 -0.5164 34 1 -0.3634 -0.8915 -0.5110 35 1 4.6052 -2.5628 -0.0063 36 1 6.0092 -0.1633 -1.2663 37 1 6.6132 -1.8379 -1.2670 38 1 5.1228 -1.4291 -2.1496 39 1 6.0223 -0.1594 1.2322 40 1 5.1453 -1.4225 2.1288 41 1 6.6263 -1.8341 1.2319 42 1 1.8203 -2.7029 -1.9998 43 1 2.1895 -6.5645 -1.2048 44 1 3.3508 -5.1854 -1.4275 45 1 1.1136 -7.2747 -3.6156 46 1 1.7140 -9.7315 -5.7907 47 1 -0.7282 -6.6251 -3.2303 48 1 -0.7373 -6.5078 -1.4168 49 1 -1.8738 -4.3378 -1.4723 50 1 -2.4697 -4.9043 -3.0916 51 1 -0.3397 -2.9676 -2.8038 52 1 -0.4439 -4.1029 -4.2181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078776295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:09 Heat of formation + Delta-G solvation = 74.673674 kcal Electronic energy + Delta-G solvation = -31625.614843 eV Core-core repulsion = 27627.724819 eV Total energy + Delta-G solvation = -3997.890024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71954 -40.49108 -38.49426 -35.92415 -35.01460 -34.00067 -32.55001 -32.12209 -30.91270 -29.68089 -27.61215 -27.23725 -25.47060 -24.81610 -24.08583 -23.45660 -23.07098 -21.74038 -20.39783 -19.69264 -19.24549 -18.19400 -17.63395 -17.14647 -16.54801 -15.73322 -15.38048 -15.11565 -15.02658 -14.84322 -14.62294 -14.36340 -14.14773 -13.71906 -13.54583 -13.41597 -13.24252 -12.87925 -12.76630 -12.63868 -12.44184 -12.25970 -12.04718 -11.82754 -11.64457 -11.62668 -11.36165 -11.33017 -11.19636 -10.92789 -10.81797 -10.76069 -10.64962 -10.19207 -10.12616 -9.89659 -9.81311 -9.63371 -9.59993 -9.33294 -8.81770 -8.80158 -8.68048 -6.94890 -5.78958 -3.06983 1.46883 2.26870 2.44908 2.66227 3.38845 3.42476 3.48001 3.49201 4.15310 4.40770 4.57915 4.61224 4.77452 4.83070 4.95171 5.00309 5.04015 5.05951 5.09325 5.20594 5.23377 5.30988 5.34190 5.46633 5.49645 5.55838 5.58947 5.66344 5.73654 5.78446 5.87138 5.89819 5.93935 6.04006 6.07991 6.10878 6.13978 6.17445 6.20297 6.23133 6.29644 6.39351 6.44652 6.56270 6.69044 6.79135 6.91261 6.96814 7.09499 7.38069 7.68651 7.69874 8.36820 8.40061 9.51581 10.09817 10.44581 11.43440 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.003209 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.429309 B = 8722.164480 C =10252.616473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.129 3.871 3 N -0.465 5.465 4 H 0.440 0.560 5 N -0.290 5.290 6 C 0.129 3.871 7 C -0.020 4.020 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.279 4.279 11 C 0.598 3.402 12 O -0.537 6.537 13 N -0.695 5.695 14 C 0.142 3.858 15 H 0.096 0.904 16 C -0.174 4.174 17 C 0.181 3.819 18 H 0.074 0.926 19 N -0.708 5.708 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.125 4.125 29 C -0.105 4.105 30 C -0.140 4.140 31 C -0.123 4.123 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.401 0.599 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.057 0.943 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 20.251 10.616 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.003 4.003 3 N -0.171 5.171 4 H 0.285 0.715 5 N -0.111 5.111 6 C -0.039 4.039 7 C -0.040 4.040 8 C -0.200 4.200 9 C -0.199 4.199 10 C -0.294 4.294 11 C 0.383 3.617 12 O -0.413 6.413 13 N -0.344 5.344 14 C 0.037 3.963 15 H 0.114 0.886 16 C -0.217 4.217 17 C 0.068 3.932 18 H 0.092 0.908 19 N -0.346 5.346 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.128 4.128 29 C -0.143 4.143 30 C -0.177 4.177 31 C -0.160 4.160 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.235 0.765 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.222 0.778 46 H 0.065 0.935 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.738 20.853 11.199 23.734 hybrid contribution -0.130 -0.410 -1.067 1.151 sum -1.867 20.443 10.131 22.892 Atomic orbital electron populations 1.20572 0.86502 1.04493 1.04165 1.21349 0.94396 0.86750 0.97825 1.45989 1.04165 1.08168 1.58765 0.71549 1.77048 0.95460 1.12531 1.26093 1.22280 0.94062 0.91068 0.96513 1.19708 0.89856 0.97469 0.96996 1.21817 0.99689 1.02172 0.96325 1.21796 0.99443 1.02112 0.96560 1.19923 0.93000 0.93479 1.22961 1.17243 0.76325 0.84442 0.83697 1.90778 1.51170 1.68092 1.31302 1.45655 1.67899 1.12656 1.08227 1.21530 0.96711 0.80289 0.97808 0.88588 1.24287 0.97518 0.98583 1.01287 1.21383 0.91858 0.90412 0.89529 0.90814 1.42362 1.36712 1.16847 1.38691 1.19288 1.07666 1.01505 1.08900 0.91196 1.24732 0.98932 0.97022 1.00069 1.69648 1.35699 1.09311 1.43337 0.86221 0.80800 0.77635 0.81715 1.21713 1.21828 1.20788 1.23436 0.95559 0.97861 0.95899 1.22461 0.93382 0.95757 1.02655 1.22821 0.96884 0.97846 1.00167 1.22624 0.95998 0.97238 1.00144 0.89394 0.90396 0.89152 0.89223 0.92081 0.91674 0.92276 0.92089 0.92437 0.91762 0.76474 0.89612 0.92251 0.77807 0.93479 0.88476 0.91851 0.91007 0.91969 0.92392 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.25 36.01 0.37 -0.28 16 2 C 0.13 1.25 7.29 -81.60 -0.60 0.65 16 3 N -0.46 -4.12 7.29 33.86 0.25 -3.87 16 4 H 0.44 2.32 8.96 -182.72 -1.64 0.68 16 5 N -0.29 -3.38 12.63 33.90 0.43 -2.95 16 6 C 0.13 1.58 5.77 -82.02 -0.47 1.11 16 7 C -0.02 -0.22 3.31 -91.77 -0.30 -0.53 16 8 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 9 C -0.14 -1.44 9.17 37.15 0.34 -1.10 16 10 C -0.28 -3.48 5.88 -105.07 -0.62 -4.10 16 11 C 0.60 8.56 6.67 -12.52 -0.08 8.48 16 12 O -0.54 -9.64 16.71 5.28 0.09 -9.55 16 13 N -0.70 -9.14 4.81 -54.44 -0.26 -9.41 16 14 C 0.14 2.14 4.12 -67.48 -0.28 1.86 16 15 H 0.10 1.55 7.46 -51.93 -0.39 1.16 16 16 C -0.17 -3.05 7.69 -25.75 -0.20 -3.24 16 17 C 0.18 3.39 4.28 -67.48 -0.29 3.10 16 18 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 19 N -0.71 -16.90 5.30 -52.98 -0.28 -17.18 16 20 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C -0.12 -1.92 0.92 -154.71 -0.14 -2.07 16 29 C -0.10 -1.63 7.15 -26.28 -0.19 -1.81 16 30 C -0.14 -1.81 8.08 -25.75 -0.21 -2.02 16 31 C -0.12 -1.66 7.62 -26.28 -0.20 -1.86 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.09 1.12 7.56 -51.93 -0.39 0.73 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 4.75 8.40 -40.82 -0.34 4.41 16 43 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.39 9.78 6.23 -40.82 -0.25 9.53 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.10 1.75 7.03 -51.93 -0.36 1.38 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.06 0.68 7.58 -51.93 -0.39 0.29 16 52 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 422.92 15.07 6.37 6.37 Total: -1.00 -32.69 422.92 -10.55 -43.24 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -10.07 Total: 13.09 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.77 Total: -9.99 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.86 Total: -60.14 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.69 -10.55 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.915 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds