Wall clock time and date at job start Wed Apr 1 2020 03:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34253 * 126.29289 * 2 1 4 4 H 0.97009 * 125.75517 * 0.04155 * 3 2 1 5 5 N 1.39933 * 108.49222 * 180.24639 * 3 2 1 6 6 C 1.30447 * 108.89678 * 359.75563 * 5 3 2 7 7 C 1.50703 * 125.98988 * 179.97438 * 6 5 3 8 8 C 1.53008 * 109.46750 * 299.99823 * 7 6 5 9 9 C 1.52995 * 109.47092 * 59.99519 * 7 6 5 10 10 C 1.38043 * 126.28711 * 179.83038 * 2 1 3 11 11 C 1.47425 * 126.41898 * 0.02562 * 10 2 1 12 12 O 1.21603 * 120.00138 * 269.69269 * 11 10 2 13 13 N 1.34782 * 119.99725 * 89.68772 * 11 10 2 14 14 C 1.46505 * 119.99630 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.88609 * 23.65995 * 14 13 11 16 16 C 1.53948 * 113.74574 * 252.22883 * 14 13 11 17 17 C 1.53957 * 87.29686 * 270.25087 * 16 14 13 18 18 H 1.09002 * 113.65722 * 89.73762 * 17 16 14 19 19 N 1.46498 * 113.66407 * 220.79629 * 17 16 14 20 20 C 1.36932 * 119.99792 * 252.18888 * 19 17 16 21 21 H 1.08000 * 120.00566 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99800 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00122 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99829 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47346 * 89.99703 * 24 22 20 26 26 H 1.48504 * 109.46928 * 209.99602 * 24 22 20 27 27 H 1.48499 * 109.47327 * 329.99173 * 24 22 20 28 28 C 1.52909 * 113.65992 * 154.99882 * 14 13 11 29 29 C 1.52910 * 121.13680 * 215.38345 * 28 14 13 30 30 C 1.53949 * 86.78077 * 100.82535 * 29 28 14 31 31 C 1.52905 * 121.13655 * 323.95072 * 28 14 13 32 32 H 1.09002 * 109.46923 * 270.17224 * 1 2 3 33 33 H 1.08994 * 109.47122 * 30.16935 * 1 2 3 34 34 H 1.08995 * 109.47611 * 150.17827 * 1 2 3 35 35 H 1.09000 * 109.46948 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47304 * 60.00082 * 8 7 6 37 37 H 1.09002 * 109.46557 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47136 * 299.99790 * 8 7 6 39 39 H 1.09001 * 109.47362 * 300.00162 * 9 7 6 40 40 H 1.09004 * 109.47103 * 60.00499 * 9 7 6 41 41 H 1.09002 * 109.47125 * 179.97438 * 9 7 6 42 42 H 0.96996 * 119.99930 * 0.02562 * 13 11 10 43 43 H 1.09001 * 113.57503 * 155.64767 * 16 14 13 44 44 H 1.08996 * 113.57974 * 24.85691 * 16 14 13 45 45 H 0.96998 * 119.99697 * 72.18259 * 19 17 16 46 46 H 0.96992 * 120.00080 * 180.02562 * 23 22 20 47 47 H 1.09006 * 113.66074 * 215.29190 * 29 28 14 48 48 H 1.08994 * 113.66448 * 346.35155 * 29 28 14 49 49 H 1.09009 * 113.57633 * 270.12923 * 30 29 28 50 50 H 1.09000 * 113.65567 * 139.34741 * 30 29 28 51 51 H 1.08990 * 113.66878 * 13.64950 * 31 28 14 52 52 H 1.09000 * 113.66430 * 144.61574 * 31 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 0.0006 5 7 3.6340 0.6543 -0.0057 6 6 3.6590 -0.6499 -0.0038 7 6 4.8951 -1.5120 -0.0090 8 6 5.7194 -1.2140 -1.2631 9 6 5.7325 -1.2102 1.2353 10 6 2.3240 -1.1127 0.0033 11 6 1.8858 -2.5203 0.0069 12 8 1.7100 -3.0997 1.0615 13 7 1.6798 -3.1650 -1.1587 14 6 1.2437 -4.5636 -1.1550 15 1 0.7371 -4.8473 -0.2326 16 6 2.3383 -5.5553 -1.5891 17 6 1.8361 -5.3654 -3.0320 18 1 2.3284 -4.5506 -3.5628 19 7 1.7912 -6.6077 -3.8072 20 6 2.7061 -6.8271 -4.8022 21 1 3.4604 -6.0843 -5.0158 22 6 2.6632 -8.0039 -5.5372 23 7 1.7437 -8.9091 -5.2774 24 14 3.9116 -8.3036 -6.8940 25 1 5.1007 -8.9912 -6.3297 26 1 3.3023 -9.1536 -7.9484 27 1 4.3243 -7.0043 -7.4829 28 6 0.4901 -4.9747 -2.4204 29 6 -0.6701 -5.9690 -2.3618 30 6 -1.6057 -4.7492 -2.4455 31 6 -0.4491 -4.0009 -3.1329 32 1 -0.3633 0.0031 1.0277 33 1 -0.3633 0.8884 -0.5164 34 1 -0.3634 -0.8915 -0.5110 35 1 4.6052 -2.5628 -0.0063 36 1 6.0092 -0.1633 -1.2663 37 1 6.6132 -1.8379 -1.2670 38 1 5.1228 -1.4291 -2.1496 39 1 6.0223 -0.1594 1.2322 40 1 5.1453 -1.4225 2.1288 41 1 6.6263 -1.8341 1.2319 42 1 1.8203 -2.7029 -1.9998 43 1 2.1895 -6.5645 -1.2048 44 1 3.3508 -5.1854 -1.4275 45 1 1.1136 -7.2747 -3.6156 46 1 1.7140 -9.7315 -5.7907 47 1 -0.7282 -6.6251 -3.2303 48 1 -0.7373 -6.5078 -1.4168 49 1 -1.8738 -4.3378 -1.4723 50 1 -2.4697 -4.9043 -3.0916 51 1 -0.3397 -2.9676 -2.8038 52 1 -0.4439 -4.1029 -4.2181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078776295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:08 Heat of formation + Delta-G solvation = 53.960376 kcal Electronic energy + Delta-G solvation = -31626.513039 eV Core-core repulsion = 27627.724819 eV Total energy + Delta-G solvation = -3998.788220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.58260 -41.77376 -39.69382 -36.75108 -36.40607 -35.65230 -33.88779 -33.04785 -32.04582 -31.26847 -28.35853 -28.04926 -26.69078 -26.53986 -25.36940 -24.50942 -24.26319 -23.06580 -21.64132 -20.77834 -20.08512 -19.43469 -19.13207 -18.52106 -17.64050 -16.95615 -16.77058 -16.31956 -16.06998 -15.90286 -15.77352 -15.55024 -15.38462 -15.14252 -14.86253 -14.23418 -14.17782 -14.05547 -13.86372 -13.53672 -13.40053 -13.35516 -13.28177 -13.14863 -13.02722 -12.82330 -12.68378 -12.55686 -12.46185 -12.16637 -12.15044 -12.03778 -11.95952 -11.79756 -11.64335 -11.30769 -11.19560 -10.93729 -10.80482 -10.61325 -10.40105 -9.94483 -9.66700 -8.91501 -7.91247 -5.18193 0.69308 1.35925 1.48928 1.50049 1.53598 1.57975 1.74717 2.27796 2.58759 3.37892 3.40076 3.48818 3.60655 3.71395 3.80668 3.90138 3.98518 4.03733 4.04815 4.17066 4.19811 4.20070 4.34544 4.37708 4.48124 4.63118 4.63899 4.67971 4.77506 4.78149 4.86530 4.89145 4.92918 4.95354 4.99787 5.01856 5.03994 5.10713 5.12726 5.15678 5.16952 5.26187 5.29408 5.31939 5.44438 5.52059 5.55281 5.68837 5.71494 6.28507 6.31106 6.56792 6.58905 7.24978 7.38112 8.16103 8.39405 9.32011 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.003209 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.429309 B = 8722.164480 C =10252.616473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.149 3.851 3 N -0.449 5.449 4 H 0.457 0.543 5 N -0.306 5.306 6 C 0.119 3.881 7 C -0.023 4.023 8 C -0.136 4.136 9 C -0.136 4.136 10 C -0.314 4.314 11 C 0.608 3.392 12 O -0.577 6.577 13 N -0.683 5.683 14 C 0.163 3.837 15 H 0.092 0.908 16 C -0.173 4.173 17 C 0.168 3.832 18 H 0.077 0.923 19 N -0.720 5.720 20 C -0.240 4.240 21 H 0.075 0.925 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.967 3.033 25 H -0.291 1.291 26 H -0.297 1.297 27 H -0.269 1.269 28 C -0.115 4.115 29 C -0.115 4.115 30 C -0.123 4.123 31 C -0.115 4.115 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.410 0.590 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.377 0.623 46 H 0.250 0.750 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 23.240 10.700 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.015 3.985 3 N -0.157 5.157 4 H 0.305 0.695 5 N -0.128 5.128 6 C -0.048 4.048 7 C -0.044 4.044 8 C -0.194 4.194 9 C -0.194 4.194 10 C -0.329 4.329 11 C 0.394 3.606 12 O -0.456 6.456 13 N -0.332 5.332 14 C 0.057 3.943 15 H 0.110 0.890 16 C -0.215 4.215 17 C 0.057 3.943 18 H 0.095 0.905 19 N -0.358 5.358 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.265 4.265 23 N -0.619 5.619 24 Si 0.797 3.203 25 H -0.218 1.218 26 H -0.224 1.224 27 H -0.194 1.194 28 C -0.117 4.117 29 C -0.153 4.153 30 C -0.160 4.160 31 C -0.152 4.152 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.246 0.754 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.210 0.790 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.109 0.891 50 H 0.090 0.910 51 H 0.102 0.898 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.249 23.936 11.283 26.557 hybrid contribution 0.034 -1.260 -1.020 1.621 sum -2.215 22.676 10.263 24.989 Atomic orbital electron populations 1.20736 0.83984 1.05933 1.05109 1.21742 0.95685 0.85908 0.95201 1.46006 1.03264 1.09033 1.57422 0.69488 1.76992 0.96983 1.12108 1.26735 1.22378 0.94236 0.91443 0.96762 1.19718 0.90209 0.96431 0.98006 1.21766 0.99697 1.02509 0.95407 1.21754 0.99549 1.02571 0.95511 1.19862 0.93776 0.93014 1.26234 1.17450 0.75088 0.85030 0.82985 1.90756 1.52942 1.69200 1.32677 1.45527 1.67399 1.11661 1.08647 1.21175 0.95083 0.80783 0.97269 0.89039 1.24149 0.98347 0.98637 1.00384 1.21664 0.94587 0.88670 0.89346 0.90541 1.42513 1.36044 1.18365 1.38866 1.19677 1.07572 1.01195 1.08718 0.90677 1.25474 1.01056 0.97252 1.02753 1.69801 1.37717 1.09701 1.44698 0.85232 0.78417 0.77707 0.78981 1.21833 1.22428 1.19352 1.23272 0.94155 0.98761 0.95512 1.22453 0.94820 0.96499 1.01504 1.22766 0.96500 0.95552 1.01228 1.22581 0.95126 0.98243 0.99270 0.88575 0.87114 0.89538 0.90992 0.91771 0.90774 0.92898 0.91726 0.93622 0.90487 0.75374 0.91318 0.92415 0.78988 0.94151 0.91362 0.91660 0.89101 0.90982 0.89753 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.25 71.24 0.73 -0.22 16 2 C 0.15 2.48 7.29 42.14 0.31 2.79 16 3 N -0.45 -6.74 7.29 -46.80 -0.34 -7.08 16 4 H 0.46 3.30 8.96 -213.42 -1.91 1.39 16 5 N -0.31 -6.61 12.63 -46.67 -0.59 -7.20 16 6 C 0.12 2.81 5.77 43.52 0.25 3.07 16 7 C -0.02 -0.51 3.31 -11.54 -0.04 -0.55 16 8 C -0.14 -2.63 9.18 71.98 0.66 -1.97 16 9 C -0.14 -2.70 9.17 71.98 0.66 -2.04 16 10 C -0.31 -7.39 5.88 -20.15 -0.12 -7.51 16 11 C 0.61 16.83 6.67 86.66 0.58 17.41 16 12 O -0.58 -20.52 16.71 -4.04 -0.07 -20.59 16 13 N -0.68 -17.11 4.81 -444.41 -2.14 -19.24 16 14 C 0.16 4.80 4.12 45.28 0.19 4.98 16 15 H 0.09 2.88 7.46 -2.39 -0.02 2.87 16 16 C -0.17 -6.13 7.69 31.23 0.24 -5.89 16 17 C 0.17 6.31 4.28 45.29 0.19 6.51 16 18 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 19 N -0.72 -35.17 5.30 -321.54 -1.70 -36.87 16 20 C -0.24 -13.01 9.97 84.04 0.84 -12.18 16 21 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 23 N -0.97 -58.61 13.06 21.65 0.28 -58.32 16 24 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C -0.11 -3.45 0.92 -52.31 -0.05 -3.50 16 29 C -0.11 -3.55 7.15 30.88 0.22 -3.32 16 30 C -0.12 -2.92 8.08 31.23 0.25 -2.67 16 31 C -0.11 -2.86 7.62 30.88 0.24 -2.63 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.09 0.96 7.96 -2.39 -0.02 0.94 16 35 H 0.07 1.83 7.56 -2.39 -0.02 1.81 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.41 8.96 8.40 -92.71 -0.78 8.18 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.38 19.78 6.23 -92.71 -0.58 19.20 16 46 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 47 H 0.07 2.54 7.03 -2.38 -0.02 2.52 16 48 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.08 1.67 7.58 -2.39 -0.02 1.66 16 52 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -72.09 422.92 0.77 -71.32 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -2.32 Total: 41.60 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.62 Total: -11.40 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -4.49 Total: -128.72 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.07 Total: -20.59 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.09 0.77 -71.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.285 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds