Wall clock time and date at job start Wed Apr 1 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34264 * 126.29064 * 2 1 4 4 H 0.97003 * 125.74999 * 359.97438 * 3 2 1 5 5 N 1.39929 * 108.49176 * 180.24000 * 3 2 1 6 6 C 1.30446 * 108.90066 * 359.75624 * 5 3 2 7 7 C 1.50694 * 125.99204 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47213 * 299.95112 * 7 6 5 9 9 C 1.53003 * 109.47251 * 59.95405 * 7 6 5 10 10 C 1.38037 * 126.29641 * 179.81920 * 2 1 3 11 11 C 1.47433 * 126.41132 * 0.02562 * 10 2 1 12 12 O 1.21601 * 120.00263 * 269.68458 * 11 10 2 13 13 N 1.34783 * 120.00007 * 89.68982 * 11 10 2 14 14 C 1.46499 * 119.99638 * 180.02562 * 13 11 10 15 15 H 1.08992 * 112.88955 * 336.34117 * 14 13 11 16 16 C 1.54147 * 113.72039 * 107.74687 * 14 13 11 17 17 C 1.53952 * 87.22650 * 139.14642 * 16 14 13 18 18 H 1.09002 * 113.66257 * 89.85973 * 17 16 14 19 19 N 1.46498 * 113.65985 * 220.82548 * 17 16 14 20 20 C 1.36943 * 119.99752 * 253.70920 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 C 1.52909 * 86.88438 * 335.34368 * 17 16 14 29 29 C 1.52914 * 121.13623 * 259.13496 * 28 17 16 30 30 C 1.53952 * 86.78154 * 209.37981 * 29 28 17 31 31 C 1.52905 * 121.13816 * 150.57437 * 28 17 16 32 32 H 1.09000 * 109.47535 * 270.17592 * 1 2 3 33 33 H 1.09004 * 109.47657 * 30.18268 * 1 2 3 34 34 H 1.09004 * 109.47215 * 150.17898 * 1 2 3 35 35 H 1.09001 * 109.47142 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.46833 * 59.99549 * 8 7 6 37 37 H 1.08992 * 109.47629 * 179.97438 * 8 7 6 38 38 H 1.08995 * 109.46925 * 300.00536 * 8 7 6 39 39 H 1.09001 * 109.46690 * 299.99838 * 9 7 6 40 40 H 1.08990 * 109.47094 * 59.99976 * 9 7 6 41 41 H 1.09001 * 109.47068 * 180.02562 * 9 7 6 42 42 H 0.96999 * 119.99644 * 359.97438 * 13 11 10 43 43 H 1.08996 * 113.58133 * 24.57171 * 16 14 13 44 44 H 1.09000 * 113.63350 * 253.72705 * 16 14 13 45 45 H 0.97001 * 120.00384 * 73.99275 * 19 17 16 46 46 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.08995 * 113.66107 * 323.84906 * 29 28 17 48 48 H 1.09001 * 113.65891 * 94.90690 * 29 28 17 49 49 H 1.09000 * 113.57991 * 270.13018 * 30 29 28 50 50 H 1.08999 * 113.65131 * 139.34966 * 30 29 28 51 51 H 1.09003 * 113.66164 * 265.09185 * 31 28 17 52 52 H 1.08998 * 113.66755 * 36.14599 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0822 0.0000 4 1 2.0025 2.0050 -0.0004 5 7 3.6340 0.6545 -0.0056 6 6 3.6590 -0.6497 -0.0036 7 6 4.8951 -1.5117 -0.0075 8 6 5.7201 -1.2147 -1.2613 9 6 5.7319 -1.2091 1.2372 10 6 2.3241 -1.1125 0.0035 11 6 1.8859 -2.5202 0.0074 12 8 1.7103 -3.0995 1.0621 13 7 1.6799 -3.1652 -1.1580 14 6 1.2439 -4.5638 -1.1541 15 1 1.5067 -5.0871 -0.2348 16 6 -0.2258 -4.7563 -1.5772 17 6 0.2427 -5.9886 -2.3722 18 1 0.2230 -6.9140 -1.7965 19 7 -0.3964 -6.1198 -3.6839 20 6 -1.3542 -7.0774 -3.8862 21 1 -1.6416 -7.7329 -3.0774 22 6 -1.9556 -7.2055 -5.1306 23 7 -1.6049 -6.4069 -6.1164 24 14 -3.2627 -8.5112 -5.4063 25 1 -4.6002 -7.9465 -5.0942 26 1 -3.2303 -8.9525 -6.8239 27 1 -2.9967 -9.6727 -4.5202 28 6 1.6205 -5.3275 -2.4242 29 6 2.0978 -4.5919 -3.6769 30 6 3.5259 -4.9872 -3.2594 31 6 2.8975 -6.1656 -2.4935 32 1 -0.3634 0.0032 1.0276 33 1 -0.3634 0.8883 -0.5167 34 1 -0.3634 -0.8916 -0.5111 35 1 4.6053 -2.5625 -0.0042 36 1 6.0098 -0.1638 -1.2651 37 1 6.6144 -1.8378 -1.2640 38 1 5.1240 -1.4302 -2.1480 39 1 6.0217 -0.1583 1.2334 40 1 5.1442 -1.4207 2.1303 41 1 6.6262 -1.8323 1.2341 42 1 1.8197 -2.7030 -1.9993 43 1 -0.6077 -3.9516 -2.2052 44 1 -0.8909 -4.9991 -0.7484 45 1 -0.1381 -5.5311 -4.4103 46 1 -2.0254 -6.4962 -6.9859 47 1 1.7702 -5.0551 -4.6076 48 1 1.9155 -3.5176 -3.6495 49 1 4.0095 -4.2550 -2.6126 50 1 4.1559 -5.2956 -4.0937 51 1 3.3542 -6.3484 -1.5208 52 1 2.7948 -7.0710 -3.0916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078776296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:12 Heat of formation + Delta-G solvation = 74.024100 kcal Electronic energy + Delta-G solvation = -31652.585956 eV Core-core repulsion = 27654.667764 eV Total energy + Delta-G solvation = -3997.918192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70660 -40.48695 -38.46253 -35.97202 -34.87171 -34.01232 -32.60849 -32.21268 -30.93344 -29.73037 -27.58955 -27.31326 -25.49493 -24.78430 -24.12559 -23.48860 -23.09393 -21.42364 -20.37022 -19.80534 -19.27641 -18.24565 -17.56483 -17.14387 -16.42471 -16.11397 -15.25703 -15.17942 -15.00162 -14.76133 -14.62611 -14.46484 -14.16644 -13.80767 -13.55354 -13.26278 -13.01740 -12.88051 -12.84531 -12.70543 -12.42852 -12.33026 -12.06622 -11.81804 -11.66478 -11.48577 -11.40125 -11.29449 -11.25396 -10.99957 -10.83370 -10.75453 -10.71252 -10.22514 -10.09135 -9.98509 -9.83634 -9.62393 -9.59625 -9.39758 -8.82242 -8.78561 -8.63850 -6.96063 -5.80314 -3.08194 1.49145 2.27248 2.46429 2.68978 3.42032 3.46453 3.48607 3.49886 4.16225 4.41736 4.57696 4.62946 4.77015 4.83210 4.93581 4.95152 4.97361 5.05504 5.17056 5.17730 5.22610 5.26269 5.31933 5.45535 5.47589 5.58022 5.62091 5.65909 5.66650 5.72552 5.81798 5.88564 5.92883 6.02629 6.03620 6.06024 6.06801 6.16823 6.18971 6.26360 6.29363 6.35005 6.41675 6.61308 6.63454 6.80236 6.92687 6.94819 7.09515 7.38430 7.69499 7.73343 8.38610 8.39623 9.50473 10.08101 10.42984 11.42132 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.002795 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.889356 B =10016.245774 C =10800.745840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.131 3.869 3 N -0.465 5.465 4 H 0.440 0.560 5 N -0.291 5.291 6 C 0.126 3.874 7 C -0.018 4.018 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.280 4.280 11 C 0.596 3.404 12 O -0.540 6.540 13 N -0.703 5.703 14 C 0.144 3.856 15 H 0.111 0.889 16 C -0.174 4.174 17 C 0.181 3.819 18 H 0.079 0.921 19 N -0.707 5.707 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.123 4.123 29 C -0.108 4.108 30 C -0.139 4.139 31 C -0.122 4.122 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.400 0.600 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.386 0.614 46 H 0.255 0.745 47 H 0.097 0.903 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.061 0.939 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.259 14.606 11.036 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.001 4.001 3 N -0.171 5.171 4 H 0.285 0.715 5 N -0.113 5.113 6 C -0.042 4.042 7 C -0.039 4.039 8 C -0.200 4.200 9 C -0.199 4.199 10 C -0.295 4.295 11 C 0.380 3.620 12 O -0.416 6.416 13 N -0.353 5.353 14 C 0.039 3.961 15 H 0.129 0.871 16 C -0.216 4.216 17 C 0.068 3.932 18 H 0.097 0.903 19 N -0.345 5.345 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.125 4.125 29 C -0.145 4.145 30 C -0.177 4.177 31 C -0.159 4.159 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.235 0.765 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.221 0.779 46 H 0.065 0.935 47 H 0.115 0.885 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.700 15.068 11.753 22.944 hybrid contribution -1.416 -0.310 -0.850 1.680 sum 11.284 14.758 10.903 21.540 Atomic orbital electron populations 1.20595 0.86385 1.04694 1.04227 1.21391 0.94483 0.86718 0.97511 1.45988 1.04113 1.08205 1.58778 0.71527 1.77020 0.95593 1.12521 1.26119 1.22235 0.93995 0.91098 0.96830 1.19678 0.89890 0.97373 0.96933 1.21813 0.99530 1.02276 0.96348 1.21797 0.99362 1.02156 0.96618 1.19963 0.92945 0.93666 1.22950 1.17301 0.76236 0.84542 0.83901 1.90769 1.51515 1.67998 1.31349 1.46069 1.67856 1.13232 1.08118 1.22225 0.95944 0.80207 0.97749 0.87076 1.24315 0.94456 1.02211 1.00636 1.21152 0.89220 0.94310 0.88520 0.90289 1.42319 1.44345 1.40284 1.07540 1.19312 1.12669 1.09509 0.95730 0.91070 1.24733 1.00464 0.99577 0.96060 1.69653 1.45700 1.40475 1.02311 0.86203 0.81762 0.81305 0.77005 1.21761 1.21837 1.20727 1.23449 0.96541 0.97674 0.94872 1.22439 0.95119 0.98902 0.98085 1.22831 0.96471 0.98571 0.99815 1.22675 0.95816 0.97396 1.00046 0.89341 0.90356 0.88965 0.89387 0.92025 0.91798 0.92341 0.92057 0.92396 0.91848 0.76469 0.90252 0.92128 0.77885 0.93516 0.88482 0.92580 0.90945 0.91953 0.92072 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.25 36.00 0.37 -0.42 16 2 C 0.13 1.35 7.29 -81.60 -0.60 0.76 16 3 N -0.46 -4.28 7.29 33.86 0.25 -4.03 16 4 H 0.44 2.50 8.96 -182.72 -1.64 0.86 16 5 N -0.29 -3.37 12.63 33.89 0.43 -2.94 16 6 C 0.13 1.51 5.77 -82.02 -0.47 1.04 16 7 C -0.02 -0.19 3.31 -91.77 -0.30 -0.49 16 8 C -0.14 -1.26 9.18 37.16 0.34 -0.91 16 9 C -0.14 -1.32 9.18 37.16 0.34 -0.98 16 10 C -0.28 -3.54 5.88 -105.07 -0.62 -4.16 16 11 C 0.60 8.59 6.67 -12.51 -0.08 8.51 16 12 O -0.54 -9.69 16.71 5.28 0.09 -9.60 16 13 N -0.70 -9.30 5.28 -54.34 -0.29 -9.58 16 14 C 0.14 2.14 4.13 -67.38 -0.28 1.86 16 15 H 0.11 1.75 7.46 -51.93 -0.39 1.37 16 16 C -0.17 -2.97 7.70 -25.64 -0.20 -3.17 16 17 C 0.18 3.43 4.35 -67.48 -0.29 3.14 16 18 H 0.08 1.53 8.11 -51.93 -0.42 1.10 16 19 N -0.71 -16.75 5.32 -52.99 -0.28 -17.03 16 20 C -0.24 -6.47 9.97 -15.06 -0.15 -6.62 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 24 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C -0.12 -1.89 1.07 -154.71 -0.16 -2.05 16 29 C -0.11 -1.59 6.78 -26.28 -0.18 -1.77 16 30 C -0.14 -1.78 8.08 -25.75 -0.21 -1.99 16 31 C -0.12 -1.73 7.84 -26.28 -0.21 -1.93 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.83 7.96 -51.93 -0.41 0.42 16 35 H 0.09 0.98 7.56 -51.93 -0.39 0.59 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.40 4.85 6.71 -40.82 -0.27 4.57 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.39 9.61 6.17 -40.82 -0.25 9.36 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.10 1.70 6.99 -51.93 -0.36 1.34 16 48 H 0.06 0.75 6.42 -51.93 -0.33 0.42 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 420.58 15.07 6.34 6.34 Total: -1.00 -32.33 420.58 -10.50 -42.83 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -9.94 Total: 13.27 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.79 Total: -9.64 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.83 Total: -60.16 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.33 -10.50 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.852 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds