Wall clock time and date at job start Wed Apr 1 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34264 * 126.29064 * 2 1 4 4 H 0.97003 * 125.74999 * 359.97438 * 3 2 1 5 5 N 1.39929 * 108.49176 * 180.24000 * 3 2 1 6 6 C 1.30446 * 108.90066 * 359.75624 * 5 3 2 7 7 C 1.50694 * 125.99204 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47213 * 299.95112 * 7 6 5 9 9 C 1.53003 * 109.47251 * 59.95405 * 7 6 5 10 10 C 1.38037 * 126.29641 * 179.81920 * 2 1 3 11 11 C 1.47433 * 126.41132 * 0.02562 * 10 2 1 12 12 O 1.21601 * 120.00263 * 269.68458 * 11 10 2 13 13 N 1.34783 * 120.00007 * 89.68982 * 11 10 2 14 14 C 1.46499 * 119.99638 * 180.02562 * 13 11 10 15 15 H 1.08992 * 112.88955 * 336.34117 * 14 13 11 16 16 C 1.54147 * 113.72039 * 107.74687 * 14 13 11 17 17 C 1.53952 * 87.22650 * 139.14642 * 16 14 13 18 18 H 1.09002 * 113.66257 * 89.85973 * 17 16 14 19 19 N 1.46498 * 113.65985 * 220.82548 * 17 16 14 20 20 C 1.36943 * 119.99752 * 253.70920 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 C 1.52909 * 86.88438 * 335.34368 * 17 16 14 29 29 C 1.52914 * 121.13623 * 259.13496 * 28 17 16 30 30 C 1.53952 * 86.78154 * 209.37981 * 29 28 17 31 31 C 1.52905 * 121.13816 * 150.57437 * 28 17 16 32 32 H 1.09000 * 109.47535 * 270.17592 * 1 2 3 33 33 H 1.09004 * 109.47657 * 30.18268 * 1 2 3 34 34 H 1.09004 * 109.47215 * 150.17898 * 1 2 3 35 35 H 1.09001 * 109.47142 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.46833 * 59.99549 * 8 7 6 37 37 H 1.08992 * 109.47629 * 179.97438 * 8 7 6 38 38 H 1.08995 * 109.46925 * 300.00536 * 8 7 6 39 39 H 1.09001 * 109.46690 * 299.99838 * 9 7 6 40 40 H 1.08990 * 109.47094 * 59.99976 * 9 7 6 41 41 H 1.09001 * 109.47068 * 180.02562 * 9 7 6 42 42 H 0.96999 * 119.99644 * 359.97438 * 13 11 10 43 43 H 1.08996 * 113.58133 * 24.57171 * 16 14 13 44 44 H 1.09000 * 113.63350 * 253.72705 * 16 14 13 45 45 H 0.97001 * 120.00384 * 73.99275 * 19 17 16 46 46 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.08995 * 113.66107 * 323.84906 * 29 28 17 48 48 H 1.09001 * 113.65891 * 94.90690 * 29 28 17 49 49 H 1.09000 * 113.57991 * 270.13018 * 30 29 28 50 50 H 1.08999 * 113.65131 * 139.34966 * 30 29 28 51 51 H 1.09003 * 113.66164 * 265.09185 * 31 28 17 52 52 H 1.08998 * 113.66755 * 36.14599 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0822 0.0000 4 1 2.0025 2.0050 -0.0004 5 7 3.6340 0.6545 -0.0056 6 6 3.6590 -0.6497 -0.0036 7 6 4.8951 -1.5117 -0.0075 8 6 5.7201 -1.2147 -1.2613 9 6 5.7319 -1.2091 1.2372 10 6 2.3241 -1.1125 0.0035 11 6 1.8859 -2.5202 0.0074 12 8 1.7103 -3.0995 1.0621 13 7 1.6799 -3.1652 -1.1580 14 6 1.2439 -4.5638 -1.1541 15 1 1.5067 -5.0871 -0.2348 16 6 -0.2258 -4.7563 -1.5772 17 6 0.2427 -5.9886 -2.3722 18 1 0.2230 -6.9140 -1.7965 19 7 -0.3964 -6.1198 -3.6839 20 6 -1.3542 -7.0774 -3.8862 21 1 -1.6416 -7.7329 -3.0774 22 6 -1.9556 -7.2055 -5.1306 23 7 -1.6049 -6.4069 -6.1164 24 14 -3.2627 -8.5112 -5.4063 25 1 -4.6002 -7.9465 -5.0942 26 1 -3.2303 -8.9525 -6.8239 27 1 -2.9967 -9.6727 -4.5202 28 6 1.6205 -5.3275 -2.4242 29 6 2.0978 -4.5919 -3.6769 30 6 3.5259 -4.9872 -3.2594 31 6 2.8975 -6.1656 -2.4935 32 1 -0.3634 0.0032 1.0276 33 1 -0.3634 0.8883 -0.5167 34 1 -0.3634 -0.8916 -0.5111 35 1 4.6053 -2.5625 -0.0042 36 1 6.0098 -0.1638 -1.2651 37 1 6.6144 -1.8378 -1.2640 38 1 5.1240 -1.4302 -2.1480 39 1 6.0217 -0.1583 1.2334 40 1 5.1442 -1.4207 2.1303 41 1 6.6262 -1.8323 1.2341 42 1 1.8197 -2.7030 -1.9993 43 1 -0.6077 -3.9516 -2.2052 44 1 -0.8909 -4.9991 -0.7484 45 1 -0.1381 -5.5311 -4.4103 46 1 -2.0254 -6.4962 -6.9859 47 1 1.7702 -5.0551 -4.6076 48 1 1.9155 -3.5176 -3.6495 49 1 4.0095 -4.2550 -2.6126 50 1 4.1559 -5.2956 -4.0937 51 1 3.3542 -6.3484 -1.5208 52 1 2.7948 -7.0710 -3.0916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078776296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:11 Heat of formation + Delta-G solvation = 53.728531 kcal Electronic energy + Delta-G solvation = -31653.466038 eV Core-core repulsion = 27654.667764 eV Total energy + Delta-G solvation = -3998.798274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.57954 -41.76410 -39.67034 -36.73083 -36.34777 -35.53143 -34.08170 -33.07726 -32.03881 -31.34905 -28.39599 -28.00962 -26.76781 -26.43470 -25.38764 -24.56727 -24.24532 -22.69036 -21.70075 -20.88005 -20.06866 -19.44930 -19.16492 -18.44040 -17.57758 -17.34982 -16.57371 -16.35364 -16.00943 -15.92605 -15.84825 -15.52060 -15.29123 -15.11114 -14.83561 -14.28806 -14.22685 -14.02866 -13.86686 -13.55327 -13.41037 -13.34664 -13.14023 -13.08316 -12.98979 -12.81972 -12.77142 -12.45326 -12.34002 -12.22691 -12.12866 -12.05629 -12.01583 -11.79037 -11.62917 -11.35227 -11.22651 -11.01566 -10.81678 -10.60248 -10.40340 -9.89362 -9.67154 -8.91006 -7.91823 -5.18264 0.67611 1.37801 1.49309 1.49538 1.55553 1.58004 1.73756 2.35570 2.59691 3.38269 3.39849 3.47597 3.60695 3.65393 3.81065 3.90129 3.98210 4.02252 4.05775 4.16057 4.19752 4.23689 4.34058 4.38720 4.50256 4.57928 4.60982 4.68693 4.78623 4.80980 4.82065 4.87571 4.95664 4.97711 4.99160 4.99846 5.04385 5.10820 5.11637 5.15568 5.18932 5.29719 5.36158 5.38495 5.46873 5.50833 5.54999 5.64038 5.75291 6.26247 6.30982 6.56823 6.60742 7.26171 7.38275 8.15370 8.39831 9.31223 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.002795 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.889356 B =10016.245774 C =10800.745840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.143 3.857 3 N -0.451 5.451 4 H 0.456 0.544 5 N -0.306 5.306 6 C 0.121 3.879 7 C -0.021 4.021 8 C -0.136 4.136 9 C -0.137 4.137 10 C -0.313 4.313 11 C 0.605 3.395 12 O -0.578 6.578 13 N -0.691 5.691 14 C 0.163 3.837 15 H 0.108 0.892 16 C -0.167 4.167 17 C 0.162 3.838 18 H 0.073 0.927 19 N -0.717 5.717 20 C -0.240 4.240 21 H 0.073 0.927 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.967 3.033 25 H -0.290 1.290 26 H -0.297 1.297 27 H -0.271 1.271 28 C -0.113 4.113 29 C -0.110 4.110 30 C -0.121 4.121 31 C -0.122 4.122 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.408 0.592 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.378 0.622 46 H 0.250 0.750 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.218 15.791 11.786 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 N -0.158 5.158 4 H 0.304 0.696 5 N -0.128 5.128 6 C -0.046 4.046 7 C -0.042 4.042 8 C -0.193 4.193 9 C -0.195 4.195 10 C -0.328 4.328 11 C 0.391 3.609 12 O -0.457 6.457 13 N -0.340 5.340 14 C 0.057 3.943 15 H 0.126 0.874 16 C -0.209 4.209 17 C 0.051 3.949 18 H 0.091 0.909 19 N -0.355 5.355 20 C -0.372 4.372 21 H 0.091 0.909 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.796 3.204 25 H -0.217 1.217 26 H -0.224 1.224 27 H -0.197 1.197 28 C -0.115 4.115 29 C -0.148 4.148 30 C -0.159 4.159 31 C -0.159 4.159 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.245 0.755 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.212 0.788 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.686 16.287 12.535 24.692 hybrid contribution -1.731 -0.625 -1.000 2.095 sum 11.955 15.663 11.535 22.832 Atomic orbital electron populations 1.20697 0.84628 1.05568 1.04975 1.21684 0.95455 0.86305 0.95631 1.46002 1.03343 1.08919 1.57568 0.69601 1.76978 0.96748 1.12332 1.26720 1.22466 0.94237 0.91365 0.96571 1.19751 0.89814 0.96564 0.98068 1.21769 0.99791 1.02454 0.95317 1.21762 0.99650 1.02510 0.95541 1.19926 0.93918 0.93097 1.25882 1.17487 0.75093 0.85087 0.83217 1.90748 1.53261 1.69048 1.32658 1.45912 1.67269 1.12414 1.08449 1.21863 0.94050 0.81148 0.97190 0.87376 1.24140 0.95994 1.00776 0.99967 1.21423 0.91656 0.95016 0.86770 0.90877 1.42420 1.44350 1.39683 1.09028 1.19668 1.12509 1.09417 0.95606 0.90875 1.25446 1.02943 1.01907 0.96131 1.69794 1.47187 1.42316 1.02454 0.85236 0.79291 0.79319 0.76506 1.21712 1.22364 1.19651 1.23309 0.95032 0.97735 0.95443 1.22385 0.96730 0.99398 0.96257 1.22763 0.95232 0.97882 0.99983 1.22665 0.95151 0.97235 1.00896 0.88574 0.87306 0.90251 0.90338 0.92245 0.90212 0.92631 0.92060 0.93816 0.90078 0.75520 0.91030 0.92363 0.78816 0.94126 0.91413 0.91175 0.88982 0.91016 0.90573 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.25 71.23 0.73 -0.62 16 2 C 0.14 2.68 7.29 42.14 0.31 2.99 16 3 N -0.45 -7.32 7.29 -46.80 -0.34 -7.66 16 4 H 0.46 4.00 8.96 -213.43 -1.91 2.09 16 5 N -0.31 -6.57 12.63 -46.68 -0.59 -7.16 16 6 C 0.12 2.74 5.77 43.51 0.25 2.99 16 7 C -0.02 -0.41 3.31 -11.54 -0.04 -0.45 16 8 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 9 C -0.14 -2.37 9.18 71.98 0.66 -1.71 16 10 C -0.31 -7.54 5.88 -20.15 -0.12 -7.66 16 11 C 0.61 16.91 6.67 86.66 0.58 17.49 16 12 O -0.58 -20.53 16.71 -4.04 -0.07 -20.60 16 13 N -0.69 -17.47 5.28 -444.09 -2.34 -19.82 16 14 C 0.16 4.73 4.13 45.35 0.19 4.92 16 15 H 0.11 3.32 7.46 -2.39 -0.02 3.30 16 16 C -0.17 -5.69 7.70 31.30 0.24 -5.45 16 17 C 0.16 6.20 4.35 45.28 0.20 6.40 16 18 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 19 N -0.72 -34.66 5.32 -321.55 -1.71 -36.37 16 20 C -0.24 -13.04 9.97 84.03 0.84 -12.20 16 21 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 24 Si 0.97 45.69 29.55 68.60 2.03 47.71 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 C -0.11 -3.40 1.07 -52.31 -0.06 -3.46 16 29 C -0.11 -3.16 6.78 30.89 0.21 -2.95 16 30 C -0.12 -2.84 8.08 31.23 0.25 -2.59 16 31 C -0.12 -3.30 7.84 30.88 0.24 -3.06 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 1.32 7.96 -2.38 -0.02 1.30 16 35 H 0.08 1.65 7.56 -2.39 -0.02 1.63 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.41 9.23 6.71 -92.71 -0.62 8.61 16 43 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.38 19.36 6.17 -92.71 -0.57 18.78 16 46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 47 H 0.07 2.41 6.99 -2.39 -0.02 2.39 16 48 H 0.07 1.79 6.42 -2.39 -0.02 1.78 16 49 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -70.34 420.58 0.71 -69.63 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -2.16 Total: 42.09 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.61 Total: -10.41 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -4.70 Total: -128.43 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.07 Total: -20.60 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.34 0.71 -69.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.361 kcal (2) G-P(sol) polarization free energy of solvation -70.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds