Wall clock time and date at job start Wed Apr 1 2020 03:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34255 * 126.29445 * 2 1 4 4 H 0.97003 * 125.75440 * 0.02562 * 3 2 1 5 5 N 1.39936 * 108.49536 * 180.24298 * 3 2 1 6 6 C 1.30449 * 108.89372 * 359.75592 * 5 3 2 7 7 C 1.50705 * 125.98744 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.46971 * 300.03631 * 7 6 5 9 9 C 1.52995 * 109.47002 * 60.03571 * 7 6 5 10 10 C 1.38044 * 126.29244 * 179.82535 * 2 1 3 11 11 C 1.47434 * 126.41182 * 0.02562 * 10 2 1 12 12 O 1.21606 * 119.99346 * 269.68782 * 11 10 2 13 13 N 1.34770 * 120.00243 * 89.68539 * 11 10 2 14 14 C 1.46504 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.88389 * 26.84846 * 14 13 11 16 16 C 1.53950 * 113.66645 * 255.49818 * 14 13 11 17 17 C 1.53950 * 87.29592 * 220.79793 * 16 14 13 18 18 H 1.09006 * 113.65941 * 270.17111 * 17 16 14 19 19 N 1.46499 * 113.66414 * 139.20642 * 17 16 14 20 20 C 1.36939 * 119.99933 * 104.77943 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47144 * 90.00258 * 24 22 20 26 26 H 1.48500 * 109.47140 * 210.00775 * 24 22 20 27 27 H 1.48502 * 109.46967 * 330.00206 * 24 22 20 28 28 C 1.52914 * 86.78449 * 24.73365 * 17 16 14 29 29 C 1.52907 * 121.14350 * 209.38294 * 28 17 16 30 30 C 1.53946 * 86.78434 * 209.37620 * 29 28 17 31 31 C 1.52906 * 121.13637 * 100.81404 * 28 17 16 32 32 H 1.09004 * 109.46963 * 270.17729 * 1 2 3 33 33 H 1.09001 * 109.47346 * 30.17444 * 1 2 3 34 34 H 1.08996 * 109.47540 * 150.18080 * 1 2 3 35 35 H 1.09001 * 109.46768 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47031 * 300.00346 * 8 7 6 37 37 H 1.09004 * 109.46636 * 59.99942 * 8 7 6 38 38 H 1.08989 * 109.47042 * 180.02562 * 8 7 6 39 39 H 1.08994 * 109.47248 * 60.00754 * 9 7 6 40 40 H 1.09003 * 109.46839 * 180.02562 * 9 7 6 41 41 H 1.09001 * 109.47673 * 299.99830 * 9 7 6 42 42 H 0.96999 * 120.00018 * 0.02562 * 13 11 10 43 43 H 1.08998 * 113.57862 * 106.19494 * 16 14 13 44 44 H 1.08999 * 113.64870 * 335.40788 * 16 14 13 45 45 H 0.97001 * 119.99790 * 284.49917 * 19 17 16 46 46 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 47 47 H 1.09001 * 113.66043 * 323.84687 * 29 28 17 48 48 H 1.09000 * 113.66310 * 94.90448 * 29 28 17 49 49 H 1.09000 * 113.58131 * 270.13296 * 30 29 28 50 50 H 1.08999 * 113.65580 * 139.34498 * 30 29 28 51 51 H 1.08996 * 113.66552 * 265.09839 * 31 28 17 52 52 H 1.09001 * 113.66060 * 36.16135 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6340 0.6543 -0.0056 6 6 3.6590 -0.6499 -0.0037 7 6 4.8951 -1.5120 -0.0088 8 6 5.7200 -1.2134 -1.2624 9 6 5.7319 -1.2109 1.2361 10 6 2.3240 -1.1126 0.0034 11 6 1.8857 -2.5203 0.0072 12 8 1.7101 -3.0995 1.0619 13 7 1.6797 -3.1651 -1.1582 14 6 1.2446 -4.5640 -1.1544 15 1 0.6903 -4.8331 -0.2553 16 6 2.3628 -5.5599 -1.5121 17 6 1.3169 -6.3230 -2.3449 18 1 0.7829 -7.0884 -1.7816 19 7 1.8295 -6.8127 -3.6269 20 6 2.1149 -8.1424 -3.7873 21 1 1.9663 -8.8293 -2.9672 22 6 2.5952 -8.6074 -5.0039 23 7 2.7766 -7.7701 -6.0031 24 14 2.9852 -10.4210 -5.2224 25 1 1.7763 -11.1320 -5.7103 26 1 4.0830 -10.5757 -6.2103 27 1 3.4065 -10.9971 -3.9201 28 6 0.5615 -4.9978 -2.4519 29 6 -0.9607 -4.9643 -2.5934 30 6 -0.7728 -3.6487 -3.3704 31 6 0.6453 -4.1396 -3.7146 32 1 -0.3633 0.0032 1.0277 33 1 -0.3634 0.8884 -0.5165 34 1 -0.3634 -0.8915 -0.5110 35 1 4.6052 -2.5628 -0.0061 36 1 5.1237 -1.4279 -2.1493 37 1 6.0097 -0.1626 -1.2647 38 1 6.6137 -1.8372 -1.2662 39 1 5.1443 -1.4236 2.1291 40 1 6.6262 -1.8341 1.2322 41 1 6.0218 -0.1601 1.2337 42 1 1.8201 -2.7031 -1.9995 43 1 2.7347 -6.1237 -0.6565 44 1 3.1624 -5.1231 -2.1105 45 1 1.9629 -6.1957 -4.3635 46 1 3.1125 -8.0950 -6.8531 47 1 -1.3616 -5.7769 -3.1994 48 1 -1.4855 -4.8417 -1.6460 49 1 -0.7854 -2.7622 -2.7364 50 1 -1.4250 -3.5567 -4.2389 51 1 1.4033 -3.3581 -3.6629 52 1 0.6956 -4.7203 -4.6357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078776297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:16 Heat of formation + Delta-G solvation = 74.678013 kcal Electronic energy + Delta-G solvation = -31644.354598 eV Core-core repulsion = 27646.464762 eV Total energy + Delta-G solvation = -3997.889836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70349 -40.50899 -38.46469 -35.91074 -34.88830 -34.00835 -32.62436 -32.21480 -30.92172 -29.72104 -27.62157 -27.22534 -25.52440 -24.78503 -24.13873 -23.44275 -23.09213 -21.42197 -20.37479 -19.80996 -19.23167 -18.24983 -17.58069 -17.13767 -16.43869 -16.10392 -15.25667 -15.20455 -14.96320 -14.75816 -14.60937 -14.46509 -14.14836 -13.79175 -13.53774 -13.28569 -13.03028 -12.88912 -12.85956 -12.71164 -12.42414 -12.24684 -12.07949 -11.82993 -11.62075 -11.50220 -11.31944 -11.29805 -11.18497 -11.01240 -10.80091 -10.75584 -10.68999 -10.22487 -10.09189 -9.99670 -9.82928 -9.61900 -9.58615 -9.40554 -8.81652 -8.78801 -8.64249 -6.94773 -5.79020 -3.06882 1.48130 2.28864 2.46302 2.69479 3.43120 3.46907 3.49644 3.50828 4.16604 4.42581 4.58725 4.62089 4.74187 4.83878 4.91105 4.98017 5.02382 5.05363 5.09400 5.14543 5.19791 5.33868 5.35035 5.46791 5.49701 5.57048 5.59857 5.64442 5.74877 5.79725 5.85030 5.89370 5.93238 6.01822 6.03662 6.11805 6.13852 6.15139 6.15822 6.26609 6.31647 6.33525 6.40639 6.62202 6.64905 6.77573 6.92472 6.94548 7.10685 7.39366 7.70849 7.73242 8.39296 8.40418 9.51785 10.09274 10.44175 11.43450 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.002999 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.350629 B = 9334.808693 C =10490.187368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.128 3.872 3 N -0.465 5.465 4 H 0.440 0.560 5 N -0.290 5.290 6 C 0.128 3.872 7 C -0.020 4.020 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.279 4.279 11 C 0.595 3.405 12 O -0.539 6.539 13 N -0.703 5.703 14 C 0.144 3.856 15 H 0.110 0.890 16 C -0.174 4.174 17 C 0.181 3.819 18 H 0.079 0.921 19 N -0.707 5.707 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C -0.122 4.122 29 C -0.122 4.122 30 C -0.140 4.140 31 C -0.109 4.109 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.399 0.601 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.386 0.614 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.057 0.943 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 19.544 10.595 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.005 4.005 3 N -0.171 5.171 4 H 0.284 0.716 5 N -0.112 5.112 6 C -0.040 4.040 7 C -0.040 4.040 8 C -0.200 4.200 9 C -0.199 4.199 10 C -0.294 4.294 11 C 0.380 3.620 12 O -0.416 6.416 13 N -0.353 5.353 14 C 0.039 3.961 15 H 0.128 0.872 16 C -0.216 4.216 17 C 0.068 3.932 18 H 0.096 0.904 19 N -0.345 5.345 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.124 4.124 29 C -0.159 4.159 30 C -0.177 4.177 31 C -0.146 4.146 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.235 0.765 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.221 0.779 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.081 0.919 51 H 0.075 0.925 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.083 19.961 11.323 23.155 hybrid contribution -0.279 -0.668 -0.820 1.094 sum -3.362 19.292 10.503 22.222 Atomic orbital electron populations 1.20564 0.86538 1.04437 1.04145 1.21344 0.94382 0.86765 0.97961 1.45987 1.04169 1.08154 1.58811 0.71580 1.77047 0.95454 1.12551 1.26113 1.22281 0.94088 0.91061 0.96522 1.19708 0.89856 0.97494 0.96983 1.21813 0.99690 1.02161 0.96323 1.21793 0.99441 1.02101 0.96556 1.19978 0.92988 0.93644 1.22768 1.17295 0.76383 0.84434 0.83898 1.90772 1.51344 1.68131 1.31338 1.46076 1.67844 1.13291 1.08122 1.22180 0.97139 0.79317 0.97415 0.87212 1.24282 0.98514 0.97970 1.00844 1.21153 0.92097 0.91206 0.88744 0.90359 1.42314 1.75912 1.06939 1.09353 1.19307 1.36056 0.85043 0.96812 0.91071 1.24729 1.02186 0.97729 0.96162 1.69653 1.52038 1.33346 1.03095 0.86205 0.77591 0.85101 0.77400 1.21768 1.21831 1.20712 1.23428 0.95448 0.98946 0.94599 1.22680 0.95596 0.97694 0.99953 1.22831 0.97652 0.97367 0.99860 1.22453 0.95897 0.98153 0.98129 0.89407 0.90420 0.89206 0.89204 0.92322 0.92083 0.91661 0.92437 0.91761 0.92109 0.76476 0.92134 0.90131 0.77886 0.93520 0.89580 0.92080 0.91127 0.91919 0.92476 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.25 36.00 0.37 -0.29 16 2 C 0.13 1.26 7.29 -81.61 -0.60 0.66 16 3 N -0.47 -4.20 7.29 33.86 0.25 -3.96 16 4 H 0.44 2.38 8.96 -182.72 -1.64 0.74 16 5 N -0.29 -3.44 12.63 33.90 0.43 -3.01 16 6 C 0.13 1.61 5.77 -82.02 -0.47 1.14 16 7 C -0.02 -0.23 3.31 -91.77 -0.30 -0.54 16 8 C -0.14 -1.48 9.18 37.16 0.34 -1.14 16 9 C -0.14 -1.47 9.17 37.16 0.34 -1.13 16 10 C -0.28 -3.54 5.88 -105.07 -0.62 -4.16 16 11 C 0.60 8.62 6.67 -12.52 -0.08 8.54 16 12 O -0.54 -9.72 16.75 5.27 0.09 -9.63 16 13 N -0.70 -9.33 5.30 -54.44 -0.29 -9.61 16 14 C 0.14 2.15 4.08 -67.48 -0.28 1.88 16 15 H 0.11 1.71 7.54 -51.93 -0.39 1.32 16 16 C -0.17 -3.03 7.68 -25.75 -0.20 -3.23 16 17 C 0.18 3.44 4.35 -67.48 -0.29 3.15 16 18 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 19 N -0.71 -16.83 5.34 -52.99 -0.28 -17.11 16 20 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 24 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C -0.12 -1.86 1.06 -154.71 -0.16 -2.02 16 29 C -0.12 -1.68 7.84 -26.29 -0.21 -1.88 16 30 C -0.14 -1.71 8.08 -25.75 -0.21 -1.92 16 31 C -0.11 -1.58 6.77 -26.28 -0.18 -1.76 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.09 1.15 7.56 -51.93 -0.39 0.76 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.61 8.14 -51.94 -0.42 0.19 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.40 4.85 6.65 -40.82 -0.27 4.58 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.39 9.65 6.12 -40.82 -0.25 9.40 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.06 0.76 6.42 -51.93 -0.33 0.43 16 52 H 0.10 1.70 6.96 -51.93 -0.36 1.34 16 LS Contribution 420.54 15.07 6.34 6.34 Total: -1.00 -32.57 420.54 -10.50 -43.07 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -9.94 Total: 13.33 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.79 Total: -9.79 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.83 Total: -60.36 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.57 -10.50 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.746 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds