Wall clock time and date at job start Wed Apr 1 2020 03:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34255 * 126.29445 * 2 1 4 4 H 0.97003 * 125.75440 * 0.02562 * 3 2 1 5 5 N 1.39936 * 108.49536 * 180.24298 * 3 2 1 6 6 C 1.30449 * 108.89372 * 359.75592 * 5 3 2 7 7 C 1.50705 * 125.98744 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.46971 * 300.03631 * 7 6 5 9 9 C 1.52995 * 109.47002 * 60.03571 * 7 6 5 10 10 C 1.38044 * 126.29244 * 179.82535 * 2 1 3 11 11 C 1.47434 * 126.41182 * 0.02562 * 10 2 1 12 12 O 1.21606 * 119.99346 * 269.68782 * 11 10 2 13 13 N 1.34770 * 120.00243 * 89.68539 * 11 10 2 14 14 C 1.46504 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.88389 * 26.84846 * 14 13 11 16 16 C 1.53950 * 113.66645 * 255.49818 * 14 13 11 17 17 C 1.53950 * 87.29592 * 220.79793 * 16 14 13 18 18 H 1.09006 * 113.65941 * 270.17111 * 17 16 14 19 19 N 1.46499 * 113.66414 * 139.20642 * 17 16 14 20 20 C 1.36939 * 119.99933 * 104.77943 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47144 * 90.00258 * 24 22 20 26 26 H 1.48500 * 109.47140 * 210.00775 * 24 22 20 27 27 H 1.48502 * 109.46967 * 330.00206 * 24 22 20 28 28 C 1.52914 * 86.78449 * 24.73365 * 17 16 14 29 29 C 1.52907 * 121.14350 * 209.38294 * 28 17 16 30 30 C 1.53946 * 86.78434 * 209.37620 * 29 28 17 31 31 C 1.52906 * 121.13637 * 100.81404 * 28 17 16 32 32 H 1.09004 * 109.46963 * 270.17729 * 1 2 3 33 33 H 1.09001 * 109.47346 * 30.17444 * 1 2 3 34 34 H 1.08996 * 109.47540 * 150.18080 * 1 2 3 35 35 H 1.09001 * 109.46768 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47031 * 300.00346 * 8 7 6 37 37 H 1.09004 * 109.46636 * 59.99942 * 8 7 6 38 38 H 1.08989 * 109.47042 * 180.02562 * 8 7 6 39 39 H 1.08994 * 109.47248 * 60.00754 * 9 7 6 40 40 H 1.09003 * 109.46839 * 180.02562 * 9 7 6 41 41 H 1.09001 * 109.47673 * 299.99830 * 9 7 6 42 42 H 0.96999 * 120.00018 * 0.02562 * 13 11 10 43 43 H 1.08998 * 113.57862 * 106.19494 * 16 14 13 44 44 H 1.08999 * 113.64870 * 335.40788 * 16 14 13 45 45 H 0.97001 * 119.99790 * 284.49917 * 19 17 16 46 46 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 47 47 H 1.09001 * 113.66043 * 323.84687 * 29 28 17 48 48 H 1.09000 * 113.66310 * 94.90448 * 29 28 17 49 49 H 1.09000 * 113.58131 * 270.13296 * 30 29 28 50 50 H 1.08999 * 113.65580 * 139.34498 * 30 29 28 51 51 H 1.08996 * 113.66552 * 265.09839 * 31 28 17 52 52 H 1.09001 * 113.66060 * 36.16135 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6340 0.6543 -0.0056 6 6 3.6590 -0.6499 -0.0037 7 6 4.8951 -1.5120 -0.0088 8 6 5.7200 -1.2134 -1.2624 9 6 5.7319 -1.2109 1.2361 10 6 2.3240 -1.1126 0.0034 11 6 1.8857 -2.5203 0.0072 12 8 1.7101 -3.0995 1.0619 13 7 1.6797 -3.1651 -1.1582 14 6 1.2446 -4.5640 -1.1544 15 1 0.6903 -4.8331 -0.2553 16 6 2.3628 -5.5599 -1.5121 17 6 1.3169 -6.3230 -2.3449 18 1 0.7829 -7.0884 -1.7816 19 7 1.8295 -6.8127 -3.6269 20 6 2.1149 -8.1424 -3.7873 21 1 1.9663 -8.8293 -2.9672 22 6 2.5952 -8.6074 -5.0039 23 7 2.7766 -7.7701 -6.0031 24 14 2.9852 -10.4210 -5.2224 25 1 1.7763 -11.1320 -5.7103 26 1 4.0830 -10.5757 -6.2103 27 1 3.4065 -10.9971 -3.9201 28 6 0.5615 -4.9978 -2.4519 29 6 -0.9607 -4.9643 -2.5934 30 6 -0.7728 -3.6487 -3.3704 31 6 0.6453 -4.1396 -3.7146 32 1 -0.3633 0.0032 1.0277 33 1 -0.3634 0.8884 -0.5165 34 1 -0.3634 -0.8915 -0.5110 35 1 4.6052 -2.5628 -0.0061 36 1 5.1237 -1.4279 -2.1493 37 1 6.0097 -0.1626 -1.2647 38 1 6.6137 -1.8372 -1.2662 39 1 5.1443 -1.4236 2.1291 40 1 6.6262 -1.8341 1.2322 41 1 6.0218 -0.1601 1.2337 42 1 1.8201 -2.7031 -1.9995 43 1 2.7347 -6.1237 -0.6565 44 1 3.1624 -5.1231 -2.1105 45 1 1.9629 -6.1957 -4.3635 46 1 3.1125 -8.0950 -6.8531 47 1 -1.3616 -5.7769 -3.1994 48 1 -1.4855 -4.8417 -1.6460 49 1 -0.7854 -2.7622 -2.7364 50 1 -1.4250 -3.5567 -4.2389 51 1 1.4033 -3.3581 -3.6629 52 1 0.6956 -4.7203 -4.6357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078776297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:15 Heat of formation + Delta-G solvation = 53.936911 kcal Electronic energy + Delta-G solvation = -31645.254000 eV Core-core repulsion = 27646.464762 eV Total energy + Delta-G solvation = -3998.789238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.57927 -41.77940 -39.66908 -36.76033 -36.35469 -35.53270 -34.09147 -33.06419 -32.04684 -31.34952 -28.37636 -28.06324 -26.77011 -26.44092 -25.39320 -24.56566 -24.27105 -22.68771 -21.69563 -20.88058 -20.09239 -19.44229 -19.17845 -18.44235 -17.59670 -17.32778 -16.53928 -16.37786 -16.01302 -15.99324 -15.83162 -15.51082 -15.29375 -15.18583 -14.82201 -14.25787 -14.24055 -14.06431 -13.84742 -13.54250 -13.39656 -13.32677 -13.13930 -13.08953 -13.03907 -12.83580 -12.76475 -12.47195 -12.32668 -12.24585 -12.18106 -12.07227 -12.04294 -11.79694 -11.64055 -11.33849 -11.22910 -11.01744 -10.81701 -10.60749 -10.40460 -9.90195 -9.66398 -8.91307 -7.92025 -5.18540 0.69251 1.36378 1.49045 1.49443 1.55666 1.57948 1.75363 2.35323 2.59551 3.37742 3.39409 3.46078 3.61397 3.64183 3.79691 3.89552 3.97552 4.01647 4.05749 4.16637 4.18745 4.19325 4.35032 4.38952 4.47400 4.59584 4.62939 4.68597 4.76779 4.77060 4.80745 4.88336 4.91633 4.94472 4.98733 5.00644 5.04369 5.09258 5.11472 5.16302 5.18776 5.25245 5.30477 5.38126 5.43281 5.50646 5.54686 5.63873 5.74814 6.28424 6.30793 6.56790 6.60794 7.26401 7.38030 8.15107 8.39526 9.31047 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.002999 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.350629 B = 9334.808693 C =10490.187368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.148 3.852 3 N -0.450 5.450 4 H 0.457 0.543 5 N -0.307 5.307 6 C 0.118 3.882 7 C -0.023 4.023 8 C -0.136 4.136 9 C -0.135 4.135 10 C -0.315 4.315 11 C 0.605 3.395 12 O -0.578 6.578 13 N -0.691 5.691 14 C 0.165 3.835 15 H 0.110 0.890 16 C -0.170 4.170 17 C 0.162 3.838 18 H 0.073 0.927 19 N -0.717 5.717 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.967 3.033 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.273 1.273 28 C -0.111 4.111 29 C -0.121 4.121 30 C -0.120 4.120 31 C -0.113 4.113 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.408 0.592 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.378 0.622 46 H 0.250 0.750 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 21.572 11.373 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.014 3.986 3 N -0.157 5.157 4 H 0.305 0.695 5 N -0.129 5.129 6 C -0.049 4.049 7 C -0.044 4.044 8 C -0.194 4.194 9 C -0.193 4.193 10 C -0.330 4.330 11 C 0.391 3.609 12 O -0.457 6.457 13 N -0.341 5.341 14 C 0.059 3.941 15 H 0.128 0.872 16 C -0.212 4.212 17 C 0.051 3.949 18 H 0.091 0.909 19 N -0.355 5.355 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.797 3.203 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.198 1.198 28 C -0.113 4.113 29 C -0.158 4.158 30 C -0.157 4.157 31 C -0.151 4.151 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.245 0.755 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.212 0.788 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.090 0.910 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.345 22.036 12.131 25.527 hybrid contribution 0.089 -1.243 -0.984 1.587 sum -4.256 20.794 11.147 23.974 Atomic orbital electron populations 1.20736 0.83934 1.05933 1.05120 1.21751 0.95712 0.85885 0.95269 1.46003 1.03256 1.09034 1.57451 0.69501 1.76988 0.97012 1.12104 1.26763 1.22367 0.94259 0.91450 0.96818 1.19712 0.90256 0.96408 0.98001 1.21763 0.99675 1.02534 0.95403 1.21748 0.99529 1.02581 0.95476 1.19925 0.93757 0.93248 1.26080 1.17491 0.75185 0.85030 0.83201 1.90749 1.53094 1.69223 1.32665 1.45921 1.67335 1.12384 1.08466 1.21817 0.95394 0.79777 0.97077 0.87227 1.24128 0.98486 0.98600 1.00026 1.21429 0.93439 0.92905 0.87102 0.90861 1.42417 1.76435 1.05885 1.10776 1.19667 1.34488 0.86498 0.96651 0.90905 1.25449 1.03265 1.01475 0.96202 1.69796 1.53738 1.34882 1.03323 0.85232 0.77032 0.80770 0.77300 1.21502 1.22380 1.19768 1.23272 0.96611 0.96337 0.95109 1.22667 0.93961 0.98280 1.00918 1.22773 0.95461 0.97258 1.00193 1.22416 0.98378 0.98073 0.96203 0.88564 0.87099 0.89518 0.91095 0.93047 0.91691 0.90811 0.93576 0.90507 0.91703 0.75515 0.92728 0.91375 0.78830 0.94115 0.91113 0.90253 0.88581 0.90955 0.91242 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.25 71.23 0.73 -0.23 16 2 C 0.15 2.52 7.29 42.14 0.31 2.83 16 3 N -0.45 -6.93 7.29 -46.80 -0.34 -7.27 16 4 H 0.46 3.46 8.96 -213.42 -1.91 1.55 16 5 N -0.31 -6.79 12.63 -46.67 -0.59 -7.38 16 6 C 0.12 2.88 5.77 43.52 0.25 3.13 16 7 C -0.02 -0.54 3.31 -11.54 -0.04 -0.58 16 8 C -0.14 -2.77 9.18 71.98 0.66 -2.10 16 9 C -0.14 -2.77 9.17 71.98 0.66 -2.11 16 10 C -0.32 -7.60 5.88 -20.15 -0.12 -7.71 16 11 C 0.60 16.99 6.67 86.67 0.58 17.57 16 12 O -0.58 -20.65 16.75 -4.05 -0.07 -20.72 16 13 N -0.69 -17.56 5.30 -444.40 -2.36 -19.92 16 14 C 0.16 4.80 4.08 45.28 0.18 4.99 16 15 H 0.11 3.31 7.54 -2.39 -0.02 3.29 16 16 C -0.17 -6.05 7.68 31.23 0.24 -5.81 16 17 C 0.16 6.28 4.35 45.28 0.20 6.47 16 18 H 0.07 2.89 8.12 -2.38 -0.02 2.87 16 19 N -0.72 -35.08 5.34 -321.55 -1.72 -36.80 16 20 C -0.24 -13.23 9.98 84.03 0.84 -12.40 16 21 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 22 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 23 N -0.97 -58.13 13.06 21.65 0.28 -57.85 16 24 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 28 C -0.11 -3.32 1.06 -52.31 -0.06 -3.37 16 29 C -0.12 -3.12 7.84 30.88 0.24 -2.88 16 30 C -0.12 -2.61 8.08 31.23 0.25 -2.36 16 31 C -0.11 -3.20 6.77 30.89 0.21 -2.99 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.09 0.96 7.96 -2.39 -0.02 0.94 16 35 H 0.07 1.88 7.56 -2.39 -0.02 1.86 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.41 9.25 6.65 -92.71 -0.62 8.64 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.38 19.56 6.12 -92.71 -0.57 18.99 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 1.77 6.42 -2.39 -0.02 1.75 16 52 H 0.07 2.37 6.96 -2.39 -0.02 2.35 16 Total: -1.00 -71.94 420.54 0.70 -71.24 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: -2.15 Total: 41.77 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.61 Total: -11.16 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -4.72 Total: -129.22 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -71.94 0.70 -71.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.178 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds