Wall clock time and date at job start Wed Apr 1 2020 03:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30847 * 125.89579 * 2 1 4 4 N 1.40088 * 108.20220 * 179.81605 * 3 2 1 5 5 H 0.96994 * 126.03866 * 180.22817 * 4 3 2 6 6 C 1.34952 * 107.92600 * 0.36476 * 4 3 2 7 7 C 1.50697 * 126.12420 * 179.90392 * 6 4 3 8 8 C 1.35316 * 107.74721 * 359.64132 * 6 4 3 9 9 C 1.50699 * 126.04241 * 180.25062 * 8 6 4 10 10 C 1.52995 * 109.47012 * 89.99660 * 9 8 6 11 11 H 1.09005 * 109.47586 * 305.00307 * 10 9 8 12 12 C 1.53004 * 109.47140 * 65.00481 * 10 9 8 13 13 C 1.50707 * 109.47110 * 185.00270 * 10 9 8 14 14 O 1.21277 * 119.99593 * 359.97438 * 13 10 9 15 15 N 1.34775 * 120.00187 * 180.02562 * 13 10 9 16 16 C 1.47287 * 136.54045 * 0.02562 * 15 13 10 17 17 C 1.54083 * 87.60732 * 151.36594 * 16 15 13 18 18 H 1.08994 * 115.04963 * 142.50332 * 17 16 15 19 19 C 1.53074 * 111.38894 * 273.97126 * 17 16 15 20 20 C 1.53147 * 109.21255 * 142.39401 * 19 17 16 21 21 N 1.46537 * 108.25393 * 301.58963 * 20 19 17 22 22 C 1.36937 * 119.73785 * 236.44669 * 21 20 19 23 23 H 1.07997 * 120.00146 * 150.86545 * 22 21 20 24 24 C 1.38820 * 119.99834 * 330.85785 * 22 21 20 25 25 N 1.31617 * 119.99833 * 158.23237 * 24 22 21 26 26 Si 1.86798 * 120.00057 * 338.23474 * 24 22 21 27 27 H 1.48498 * 109.47299 * 94.80125 * 26 24 22 28 28 H 1.48501 * 109.46907 * 214.80154 * 26 24 22 29 29 H 1.48499 * 109.47083 * 334.79825 * 26 24 22 30 30 C 1.45694 * 120.52257 * 56.42374 * 21 20 19 31 31 C 1.46463 * 136.54229 * 179.62038 * 15 13 10 32 32 H 1.09000 * 111.43658 * 96.38820 * 31 15 13 33 33 H 1.09006 * 109.46709 * 269.96032 * 1 2 3 34 34 H 1.09000 * 109.47196 * 29.95493 * 1 2 3 35 35 H 1.08996 * 109.47107 * 149.96016 * 1 2 3 36 36 H 1.09002 * 109.47405 * 269.68426 * 7 6 4 37 37 H 1.09002 * 109.47462 * 29.68935 * 7 6 4 38 38 H 1.09006 * 109.46676 * 149.68867 * 7 6 4 39 39 H 1.08999 * 109.47265 * 210.00027 * 9 8 6 40 40 H 1.09000 * 109.46832 * 329.99908 * 9 8 6 41 41 H 1.08992 * 109.47338 * 59.99647 * 12 10 9 42 42 H 1.09007 * 109.46781 * 180.02562 * 12 10 9 43 43 H 1.09005 * 109.46737 * 299.99363 * 12 10 9 44 44 H 1.08997 * 113.52671 * 266.04410 * 16 15 13 45 45 H 1.08998 * 113.53272 * 36.60837 * 16 15 13 46 46 H 1.09000 * 109.50961 * 262.31917 * 19 17 16 47 47 H 1.08995 * 109.51247 * 22.42165 * 19 17 16 48 48 H 1.09007 * 109.70303 * 61.28003 * 20 19 17 49 49 H 1.09001 * 109.70423 * 181.85239 * 20 19 17 50 50 H 0.96991 * 120.00237 * 180.02562 * 25 24 22 51 51 H 1.09003 * 108.79206 * 80.89673 * 30 21 20 52 52 H 1.08995 * 108.78886 * 199.22586 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6088 0.6342 0.0043 5 1 4.3908 1.2080 0.0083 6 6 3.6143 -0.7153 -0.0013 7 6 4.8351 -1.5987 -0.0015 8 6 2.3272 -1.1330 -0.0009 9 6 1.8600 -2.5657 -0.0007 10 6 1.7025 -3.0506 1.4418 11 1 2.6378 -2.8984 1.9806 12 6 0.5853 -2.2605 2.1263 13 6 1.3546 -4.5170 1.4438 14 8 1.2432 -5.1151 0.3947 15 7 1.1664 -5.1634 2.6113 16 6 1.2050 -4.8183 4.0427 17 6 0.1740 -5.9397 4.2746 18 1 0.3105 -6.5092 5.1938 19 6 -1.2561 -5.4351 4.0660 20 6 -2.0840 -6.5321 3.3903 21 7 -1.4432 -6.8722 2.1171 22 6 -2.1575 -6.7838 0.9522 23 1 -1.6513 -6.5647 0.0236 24 6 -3.5322 -6.9760 0.9647 25 7 -4.2735 -6.4901 -0.0083 26 14 -4.3301 -7.9242 2.3625 27 1 -4.8061 -6.9723 3.3980 28 1 -5.4813 -8.7025 1.8388 29 1 -3.3371 -8.8517 2.9616 30 6 -0.0519 -7.3033 2.0809 31 6 0.8242 -6.5246 3.0298 32 1 1.7154 -7.1011 3.2777 33 1 -0.3633 -0.0007 1.0277 34 1 -0.3633 0.8904 -0.5131 35 1 -0.3633 -0.8896 -0.5144 36 1 5.1291 -1.8121 -1.0293 37 1 5.6514 -1.0907 0.5119 38 1 4.6078 -2.5327 0.5126 39 1 0.9010 -2.6353 -0.5142 40 1 2.5933 -3.1871 -0.5148 41 1 -0.3500 -2.4127 1.5877 42 1 0.4734 -2.6057 3.1542 43 1 0.8369 -1.1999 2.1250 44 1 2.1702 -5.0111 4.5109 45 1 0.8218 -3.8214 4.2605 46 1 -1.6988 -5.1867 5.0306 47 1 -1.2404 -4.5478 3.4333 48 1 -2.1193 -7.4132 4.0310 49 1 -3.0956 -6.1694 3.2081 50 1 -5.2341 -6.6240 0.0006 51 1 -0.0048 -8.3601 2.3436 52 1 0.3285 -7.1768 1.0674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084841307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:58 Heat of formation + Delta-G solvation = 97.615159 kcal Electronic energy + Delta-G solvation = -32433.923193 eV Core-core repulsion = 28437.027986 eV Total energy + Delta-G solvation = -3996.895207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.53403 -40.77005 -38.17315 -35.51687 -34.96661 -33.46675 -31.94174 -31.35924 -31.07952 -29.21212 -28.50091 -27.35675 -27.16062 -25.87442 -23.84306 -23.57735 -22.54548 -21.15684 -20.23835 -19.82459 -19.01075 -17.72207 -17.44234 -16.97021 -16.24425 -15.77637 -15.46693 -15.20806 -15.03629 -14.78757 -14.01935 -13.78480 -13.68948 -13.58424 -13.55646 -13.34989 -13.15530 -12.79324 -12.66697 -12.61061 -12.46695 -12.32632 -12.22945 -12.14140 -11.91156 -11.83777 -11.65723 -11.45117 -11.13023 -10.91901 -10.86550 -10.79398 -10.58618 -10.45276 -10.18674 -9.87258 -9.61134 -9.38699 -9.31422 -9.03855 -8.56437 -8.38683 -8.21722 -6.83108 -5.83457 -3.18441 1.73603 2.61411 2.73785 3.12968 3.20774 3.37220 3.54259 3.57699 4.48921 4.52626 4.55374 4.62128 4.73263 4.83094 4.98729 5.01171 5.06955 5.13814 5.22403 5.24685 5.31691 5.40358 5.43775 5.48097 5.52368 5.58846 5.59618 5.62507 5.65074 5.74017 5.83123 5.89003 5.96923 5.99329 6.02446 6.03408 6.07410 6.19941 6.25448 6.30749 6.38243 6.42033 6.45024 6.66347 6.67335 6.71409 6.86963 6.99601 7.17520 7.62104 8.13555 8.21378 8.50016 8.67054 9.11350 9.85661 10.19383 11.32732 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003308 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.839899 B = 8463.279466 C = 9242.363333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.091 3.909 3 N -0.300 5.300 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.085 3.915 7 C -0.093 4.093 8 C -0.223 4.223 9 C -0.022 4.022 10 C -0.092 4.092 11 H 0.084 0.916 12 C -0.147 4.147 13 C 0.548 3.452 14 O -0.525 6.525 15 N -0.631 5.631 16 C 0.093 3.907 17 C -0.112 4.112 18 H 0.093 0.907 19 C -0.116 4.116 20 C 0.130 3.870 21 N -0.595 5.595 22 C -0.251 4.251 23 H 0.085 0.915 24 C 0.023 3.977 25 N -0.908 5.908 26 Si 0.878 3.122 27 H -0.290 1.290 28 H -0.305 1.305 29 H -0.271 1.271 30 C 0.144 3.856 31 C 0.127 3.873 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.024 0.976 49 H 0.074 0.926 50 H 0.260 0.740 51 H 0.022 0.978 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.886 11.151 8.286 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 N -0.124 5.124 4 N -0.189 5.189 5 H 0.278 0.722 6 C -0.043 4.043 7 C -0.152 4.152 8 C -0.234 4.234 9 C -0.061 4.061 10 C -0.113 4.113 11 H 0.102 0.898 12 C -0.204 4.204 13 C 0.337 3.663 14 O -0.400 6.400 15 N -0.368 5.368 16 C -0.031 4.031 17 C -0.132 4.132 18 H 0.111 0.889 19 C -0.156 4.156 20 C 0.004 3.996 21 N -0.318 5.318 22 C -0.379 4.379 23 H 0.103 0.897 24 C -0.175 4.175 25 N -0.551 5.551 26 Si 0.708 3.292 27 H -0.218 1.218 28 H -0.233 1.233 29 H -0.196 1.196 30 C 0.017 3.983 31 C 0.022 3.978 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.092 0.908 50 H 0.070 0.930 51 H 0.040 0.960 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.744 12.215 7.371 22.768 hybrid contribution 0.036 -0.992 0.896 1.337 sum 17.780 11.223 8.267 22.593 Atomic orbital electron populations 1.20369 0.86559 1.03690 1.03362 1.22265 0.96993 0.90083 0.98233 1.77282 0.86412 1.22376 1.26327 1.46107 1.07272 1.04752 1.60772 0.72194 1.20872 0.96971 0.84862 1.01567 1.20472 0.92702 0.98490 1.03534 1.19739 0.90985 0.96413 1.16253 1.19685 1.02762 0.89259 0.94422 1.21176 1.00234 0.91437 0.98482 0.89802 1.21969 0.98257 0.99750 1.00418 1.20032 0.76273 0.88390 0.81569 1.90725 1.50514 1.68655 1.30100 1.49386 1.69893 1.12726 1.04757 1.23405 0.98696 0.99956 0.81005 1.22721 0.95738 0.97088 0.97610 0.88875 1.21855 0.93211 1.00561 0.99935 1.21179 0.96415 0.94422 0.87603 1.43775 1.07605 1.77168 1.03268 1.18973 0.89956 1.41827 0.87164 0.89730 1.25282 0.96219 0.99478 0.96548 1.69865 1.05076 1.45939 1.34225 0.86991 0.78562 0.81302 0.82337 1.21842 1.23297 1.19604 1.20259 0.84928 0.94028 0.99057 1.22138 0.96984 0.85191 0.93460 0.90674 0.90120 0.91066 0.89738 0.90064 0.91266 0.89465 0.90017 0.90714 0.91416 0.92316 0.91717 0.90494 0.90371 0.92422 0.91264 0.95780 0.90815 0.92985 0.96045 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.23 36.01 0.33 -0.59 16 2 C 0.09 1.16 6.26 -82.40 -0.52 0.64 16 3 N -0.30 -3.90 12.70 33.67 0.43 -3.47 16 4 N -0.48 -4.86 7.36 33.48 0.25 -4.61 16 5 H 0.43 2.93 8.96 -182.61 -1.64 1.30 16 6 C 0.09 0.87 7.21 -82.26 -0.59 0.28 16 7 C -0.09 -0.66 10.04 36.00 0.36 -0.29 16 8 C -0.22 -2.73 4.78 -105.05 -0.50 -3.23 16 9 C -0.02 -0.30 3.94 -27.89 -0.11 -0.41 16 10 C -0.09 -1.21 2.61 -91.77 -0.24 -1.45 16 11 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 12 C -0.15 -1.84 7.84 37.16 0.29 -1.55 16 13 C 0.55 9.39 7.34 -10.98 -0.08 9.31 16 14 O -0.52 -11.34 15.16 5.56 0.08 -11.26 16 15 N -0.63 -9.80 3.29 -188.05 -0.62 -10.41 16 16 C 0.09 1.06 7.39 -11.53 -0.09 0.98 16 17 C -0.11 -1.53 4.57 -90.46 -0.41 -1.94 16 18 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.12 -1.93 5.69 -26.62 -0.15 -2.08 16 20 C 0.13 2.78 4.17 -3.95 -0.02 2.76 16 21 N -0.60 -14.39 2.76 -175.07 -0.48 -14.88 16 22 C -0.25 -7.27 9.93 -15.06 -0.15 -7.42 16 23 H 0.09 2.75 8.01 -52.49 -0.42 2.33 16 24 C 0.02 0.68 5.17 -17.43 -0.09 0.59 16 25 N -0.91 -28.49 13.97 55.49 0.78 -27.72 16 26 Si 0.88 22.55 24.42 -169.99 -4.15 18.40 16 27 H -0.29 -7.15 6.70 56.52 0.38 -6.77 16 28 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 29 H -0.27 -6.82 6.74 56.52 0.38 -6.43 16 30 C 0.14 3.00 6.16 -5.58 -0.03 2.97 16 31 C 0.13 2.03 3.98 -77.98 -0.31 1.72 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.84 6.91 -51.93 -0.36 0.48 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.99 7.26 -51.93 -0.38 0.62 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.64 7.78 -51.93 -0.40 0.23 16 39 H 0.08 1.26 7.26 -51.93 -0.38 0.88 16 40 H 0.07 1.02 7.59 -51.93 -0.39 0.63 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.69 5.23 -51.93 -0.27 0.42 16 43 H 0.06 0.74 5.34 -51.93 -0.28 0.47 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.82 5.64 -51.93 -0.29 0.53 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 48 H 0.02 0.50 7.25 -51.93 -0.38 0.13 16 49 H 0.07 1.76 4.53 -51.93 -0.24 1.53 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.08 1.86 6.46 -51.93 -0.34 1.52 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -36.28 392.11 -9.68 -45.96 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -9.56 Total: 1.80 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.31 Total: 0.28 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.35 Total: -61.09 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.15 Total: 18.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.28 -9.68 -45.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084841307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.573 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds